RNA–Protein interactions for RNA: ENST00000463370.5

VAPB-203, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 2,393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-203ENST00000463370 KIF1BO60333 1816 aa17.59■□□□□ 0.41
VAPB-203ENST00000463370 IQGAP1P46940 1657 aa17.58■□□□□ 0.41
VAPB-203ENST00000463370 SYNMO15061 1565 aa17.58■□□□□ 0.41
VAPB-203ENST00000463370 NRXN1Q9ULB1 1477 aa17.58■□□□□ 0.4
VAPB-203ENST00000463370 TMF1P82094 1093 aa17.58■□□□□ 0.4
VAPB-203ENST00000463370 IFT172Q9UG01 1749 aa17.57■□□□□ 0.4
VAPB-203ENST00000463370 ARHGAP31Q2M1Z3 1444 aa17.57■□□□□ 0.4
VAPB-203ENST00000463370 PER1O15534 1290 aaPredicted RBP17.55■□□□□ 0.4
VAPB-203ENST00000463370 NUTM2DQ5VT03 806 aaPredicted RBP17.55■□□□□ 0.4
VAPB-203ENST00000463370 KIF13AQ9H1H9 1805 aa17.55■□□□□ 0.4
VAPB-203ENST00000463370 IDI1Q13907 227 aa17.54■□□□□ 0.4
VAPB-203ENST00000463370 FBXO31Q5XUX0 539 aaPredicted RBP17.53■□□□□ 0.4
VAPB-203ENST00000463370 PANK3Q9H999 370 aa17.53■□□□□ 0.4
VAPB-203ENST00000463370 PIK3C2BO00750 1634 aa17.53■□□□□ 0.4
VAPB-203ENST00000463370 PIK3C2GO75747 1445 aa17.52■□□□□ 0.4
VAPB-203ENST00000463370 ZC3H13Q5T200 1668 aaKnown RBP17.52■□□□□ 0.4
VAPB-203ENST00000463370 KIAA1210Q9ULL0 1709 aa17.52■□□□□ 0.4
VAPB-203ENST00000463370 MLECQ14165 292 aa17.5■□□□□ 0.39
VAPB-203ENST00000463370 C14orf93Q9H972 538 aaKnown RBP17.49■□□□□ 0.39
VAPB-203ENST00000463370 PPLO60437 1756 aa17.49■□□□□ 0.39
VAPB-203ENST00000463370 EIF3AQ14152 1382 aaKnown RBP17.49■□□□□ 0.39
VAPB-203ENST00000463370 RPGRIP1LQ68CZ1 1315 aa17.49■□□□□ 0.39
VAPB-203ENST00000463370 TMEM132EQ6IEE7 984 aa17.48■□□□□ 0.39
VAPB-203ENST00000463370 SUPT16HQ9Y5B9 1047 aaKnown RBP17.48■□□□□ 0.39
VAPB-203ENST00000463370 REREQ9P2R6 1566 aa17.48■□□□□ 0.39
VAPB-203ENST00000463370 AGLP35573 1532 aa17.48■□□□□ 0.39
VAPB-203ENST00000463370 SENP3Q9H4L4 574 aaPredicted RBP17.47■□□□□ 0.39
VAPB-203ENST00000463370 RALBP1Q15311 655 aa17.47■□□□□ 0.39
VAPB-203ENST00000463370 CC2D1BQ5T0F9 858 aaKnown RBP17.47■□□□□ 0.39
VAPB-203ENST00000463370 SLC52A1Q9NWF4 448 aa17.47■□□□□ 0.39
VAPB-203ENST00000463370 NEXMIFQ5QGS0 1516 aa17.47■□□□□ 0.39
VAPB-203ENST00000463370 MYBBP1AQ9BQG0 1328 aaKnown RBP17.47■□□□□ 0.39
VAPB-203ENST00000463370 PARD3Q8TEW0 1356 aa17.46■□□□□ 0.39
VAPB-203ENST00000463370 TRAK1Q9UPV9 953 aa17.46■□□□□ 0.39
VAPB-203ENST00000463370 ADGRB1O14514 1584 aa17.46■□□□□ 0.39
VAPB-203ENST00000463370 PREX1Q8TCU6 1659 aa17.46■□□□□ 0.39
VAPB-203ENST00000463370 KTN1Q86UP2 1357 aaKnown RBP17.45■□□□□ 0.38
VAPB-203ENST00000463370 PNISRQ8TF01 805 aaKnown RBP17.45■□□□□ 0.38
VAPB-203ENST00000463370 TMC1Q8TDI8 760 aa17.45■□□□□ 0.38
VAPB-203ENST00000463370 ERVK-7P63135 1459 aa17.44■□□□□ 0.38
VAPB-203ENST00000463370 ARHGEF40Q8TER5 1519 aa17.44■□□□□ 0.38
VAPB-203ENST00000463370 SENP3-EIF4A1A0A087X0R7 540 aa17.43■□□□□ 0.38
VAPB-203ENST00000463370 SETBP1Q9Y6X0 1596 aa17.43■□□□□ 0.38
VAPB-203ENST00000463370 VGFO15240 615 aaPredicted RBP17.43■□□□□ 0.38
VAPB-203ENST00000463370 BRD4O60885 1362 aaPredicted RBP17.41■□□□□ 0.38
VAPB-203ENST00000463370 CDCA8Q53HL2 280 aa17.41■□□□□ 0.38
VAPB-203ENST00000463370 TMEM131LA2VDJ0 1609 aa17.4■□□□□ 0.38
VAPB-203ENST00000463370 PPP6R1Q9UPN7 881 aa17.4■□□□□ 0.38
VAPB-203ENST00000463370 CENPJQ9HC77 1338 aaPredicted RBP17.4■□□□□ 0.38
VAPB-203ENST00000463370 CLTCQ00610 1675 aaKnown RBP17.4■□□□□ 0.38
VAPB-203ENST00000463370 ZBED9Q6R2W3 1325 aa17.4■□□□□ 0.38
VAPB-203ENST00000463370 NLRP13Q86W25 1043 aa17.39■□□□□ 0.37
VAPB-203ENST00000463370 MYOM1P52179 1685 aa17.38■□□□□ 0.37
VAPB-203ENST00000463370 MYO3AQ8NEV4 1616 aa17.38■□□□□ 0.37
VAPB-203ENST00000463370 FKBP8Q14318 412 aa17.38■□□□□ 0.37
VAPB-203ENST00000463370 AMER1Q5JTC6 1135 aaPredicted RBP17.37■□□□□ 0.37
VAPB-203ENST00000463370 LRPPRCP42704 1394 aaKnown RBP17.37■□□□□ 0.37
VAPB-203ENST00000463370 SBNO2Q9Y2G9 1366 aa17.37■□□□□ 0.37
VAPB-203ENST00000463370 KNSTRNQ9Y448 316 aa17.37■□□□□ 0.37
VAPB-203ENST00000463370 MYO5BQ9ULV0 1848 aa17.37■□□□□ 0.37
VAPB-203ENST00000463370 ZFYVE9O95405 1425 aa17.36■□□□□ 0.37
VAPB-203ENST00000463370 ASXL1Q8IXJ9 1541 aa17.35■□□□□ 0.37
VAPB-203ENST00000463370 KDM5AP29375 1690 aaKnown RBP17.34■□□□□ 0.37
VAPB-203ENST00000463370 SPATA31D1Q6ZQQ2 1576 aa17.34■□□□□ 0.37
VAPB-203ENST00000463370 STAG3Q9UJ98 1225 aa17.33■□□□□ 0.37
VAPB-203ENST00000463370 BCANQ96GW7 911 aa17.33■□□□□ 0.36
VAPB-203ENST00000463370 CARD14Q9BXL6 1004 aa17.33■□□□□ 0.36
VAPB-203ENST00000463370 ZMYM3Q14202 1370 aa17.33■□□□□ 0.36
VAPB-203ENST00000463370 STK26Q9P289 416 aa17.32■□□□□ 0.36
VAPB-203ENST00000463370 SLC24A1O60721 1099 aa17.32■□□□□ 0.36
VAPB-203ENST00000463370 A2ML1A8K2U0 1454 aa17.31■□□□□ 0.36
VAPB-203ENST00000463370 SAFB2Q14151 953 aaKnown RBP eCLIP17.31■□□□□ 0.36
VAPB-203ENST00000463370 QRICH2Q9H0J4 1663 aa17.31■□□□□ 0.36
VAPB-203ENST00000463370 ESF1Q9H501 851 aaKnown RBP17.29■□□□□ 0.36
VAPB-203ENST00000463370 PPP2R1AP30153 589 aa17.29■□□□□ 0.36
VAPB-203ENST00000463370 SLC12A5Q9H2X9 1139 aa17.29■□□□□ 0.36
VAPB-203ENST00000463370 ARHGEF28Q8N1W1 1705 aaKnown RBP17.28■□□□□ 0.36
VAPB-203ENST00000463370 NEFLP07196 543 aa17.27■□□□□ 0.36
VAPB-203ENST00000463370 TULP4Q9NRJ4 1543 aa17.27■□□□□ 0.35
VAPB-203ENST00000463370 IRX6P78412 446 aaPredicted RBP17.26■□□□□ 0.35
VAPB-203ENST00000463370 RIMS2Q9UQ26 1411 aa17.25■□□□□ 0.35
VAPB-203ENST00000463370 TRHP20396 242 aaPredicted RBP17.25■□□□□ 0.35
VAPB-203ENST00000463370 YTHDC2Q9H6S0 1430 aaKnown RBP17.25■□□□□ 0.35
VAPB-203ENST00000463370 NPC1L1Q9UHC9 1359 aa17.25■□□□□ 0.35
VAPB-203ENST00000463370 ALKQ9UM73 1620 aa17.25■□□□□ 0.35
VAPB-203ENST00000463370 PTPRMP28827 1452 aa17.24■□□□□ 0.35
VAPB-203ENST00000463370 CABP2Q9NPB3 220 aa17.24■□□□□ 0.35
VAPB-203ENST00000463370 PRAM1Q96QH2 718 aa17.24■□□□□ 0.35
VAPB-203ENST00000463370 SALL2Q9Y467 1007 aaPredicted RBP17.23■□□□□ 0.35
VAPB-203ENST00000463370 EVC2Q86UK5 1308 aa17.22■□□□□ 0.35
VAPB-203ENST00000463370 NSD3Q9BZ95 1437 aa17.22■□□□□ 0.35
VAPB-203ENST00000463370 TNRQ92752 1358 aa17.21■□□□□ 0.35
VAPB-203ENST00000463370 CEBPAP49715 358 aaPredicted RBP17.21■□□□□ 0.35
VAPB-203ENST00000463370 SMG6Q86US8 1419 aaKnown RBP17.21■□□□□ 0.35
VAPB-203ENST00000463370 MINK1Q8N4C8 1332 aaPredicted RBP17.21■□□□□ 0.35
VAPB-203ENST00000463370 ADAMTS8Q9UP79 889 aa17.2■□□□□ 0.34
VAPB-203ENST00000463370 NUDCQ9Y266 331 aa17.2■□□□□ 0.34
VAPB-203ENST00000463370 BLMP54132 1417 aaPredicted RBP17.19■□□□□ 0.34
VAPB-203ENST00000463370 POGKQ9P215 609 aa17.18■□□□□ 0.34
VAPB-203ENST00000463370 SRPK2P78362 688 aaKnown RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms