RNA–Protein interactions for RNA: ENST00000462030.5

HPS3-204, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 2

Gene HPS3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-204ENST00000462030 MADDQ8WXG6 1647 aa24.11■■□□□ 1.45
HPS3-204ENST00000462030 DUOX2Q9NRD8 1548 aa24.1■■□□□ 1.45
HPS3-204ENST00000462030 FAM161AQ3B820 660 aa24.1■■□□□ 1.45
HPS3-204ENST00000462030 ANO8Q9HCE9 1232 aaPredicted RBP24.08■■□□□ 1.45
HPS3-204ENST00000462030 CLASP1Q7Z460 1538 aa24.08■■□□□ 1.45
HPS3-204ENST00000462030 SYNMO15061 1565 aa24.08■■□□□ 1.44
HPS3-204ENST00000462030 SLFN5Q08AF3 891 aa24.06■■□□□ 1.44
HPS3-204ENST00000462030 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.06■■□□□ 1.44
HPS3-204ENST00000462030 RGS3P49796 1198 aa24.05■■□□□ 1.44
HPS3-204ENST00000462030 CCDC146Q8IYE0 955 aa24.05■■□□□ 1.44
HPS3-204ENST00000462030 ASXL1Q8IXJ9 1541 aa24.05■■□□□ 1.44
HPS3-204ENST00000462030 GSE1Q14687 1217 aa24.05■■□□□ 1.44
HPS3-204ENST00000462030 DAXXQ9UER7 740 aaPredicted RBP24.04■■□□□ 1.44
HPS3-204ENST00000462030 MYOM1P52179 1685 aa24.04■■□□□ 1.44
HPS3-204ENST00000462030 PIK3C2GO75747 1445 aa24.03■■□□□ 1.44
HPS3-204ENST00000462030 SPINK5Q9NQ38 1064 aaPredicted RBP24.03■■□□□ 1.44
HPS3-204ENST00000462030 SPHKAPQ2M3C7 1700 aa24.01■■□□□ 1.43
HPS3-204ENST00000462030 TRMT2AQ8IZ69 625 aaKnown RBP24.01■■□□□ 1.43
HPS3-204ENST00000462030 SCAF11Q99590 1463 aaKnown RBP24■■□□□ 1.43
HPS3-204ENST00000462030 BRPF3Q9ULD4 1205 aa24■■□□□ 1.43
HPS3-204ENST00000462030 APAF1O14727 1248 aa23.98■■□□□ 1.43
HPS3-204ENST00000462030 BCAR3O75815 825 aa23.98■■□□□ 1.43
HPS3-204ENST00000462030 CDCA8Q53HL2 280 aa23.98■■□□□ 1.43
HPS3-204ENST00000462030 FRAT1Q92837 279 aaPredicted RBP23.98■■□□□ 1.43
HPS3-204ENST00000462030 NKTRP30414 1462 aaKnown RBP23.98■■□□□ 1.43
HPS3-204ENST00000462030 ABCC2Q92887 1545 aa23.97■■□□□ 1.43
HPS3-204ENST00000462030 EIF3AQ14152 1382 aaKnown RBP23.96■■□□□ 1.43
HPS3-204ENST00000462030 CEP152O94986 1710 aa23.96■■□□□ 1.43
HPS3-204ENST00000462030 TRPM2O94759 1503 aa23.94■■□□□ 1.42
HPS3-204ENST00000462030 SCAPERQ9BY12 1400 aa23.94■■□□□ 1.42
HPS3-204ENST00000462030 DMRT2Q9Y5R5 561 aa23.93■■□□□ 1.42
HPS3-204ENST00000462030 CLTCL1P53675 1640 aa23.93■■□□□ 1.42
HPS3-204ENST00000462030 NPC1L1Q9UHC9 1359 aa23.93■■□□□ 1.42
HPS3-204ENST00000462030 VIRMAQ69YN4 1812 aaKnown RBP23.92■■□□□ 1.42
HPS3-204ENST00000462030 KDM5AP29375 1690 aaKnown RBP23.92■■□□□ 1.42
HPS3-204ENST00000462030 FRAT2O75474 233 aaPredicted RBP23.91■■□□□ 1.42
HPS3-204ENST00000462030 TRAPPC8Q9Y2L5 1435 aa23.91■■□□□ 1.42
HPS3-204ENST00000462030 IGHDP01880 384 aa23.9■■□□□ 1.42
HPS3-204ENST00000462030 ABCC1P33527 1531 aa23.89■■□□□ 1.42
HPS3-204ENST00000462030 E9PSI1 815 aa23.89■■□□□ 1.41
HPS3-204ENST00000462030 PLCH2O75038 1416 aa23.89■■□□□ 1.41
HPS3-204ENST00000462030 ERCC6L2Q5T890 1561 aa23.87■■□□□ 1.41
HPS3-204ENST00000462030 CHD1O14646 1710 aa23.87■■□□□ 1.41
HPS3-204ENST00000462030 PTPRTO14522 1441 aa23.86■■□□□ 1.41
HPS3-204ENST00000462030 USP19O94966 1318 aa23.86■■□□□ 1.41
HPS3-204ENST00000462030 EFCAB2Q5VUJ9 269 aa23.85■■□□□ 1.41
HPS3-204ENST00000462030 SHROOM2Q13796 1616 aa23.84■■□□□ 1.41
HPS3-204ENST00000462030 ERVK-7P63135 1459 aa23.83■■□□□ 1.41
HPS3-204ENST00000462030 CARD14Q9BXL6 1004 aa23.83■■□□□ 1.4
HPS3-204ENST00000462030 KIAA1210Q9ULL0 1709 aa23.82■■□□□ 1.4
HPS3-204ENST00000462030 STAC3Q96MF2 364 aa23.82■■□□□ 1.4
HPS3-204ENST00000462030 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.82■■□□□ 1.4
HPS3-204ENST00000462030 CGNL1Q0VF96 1302 aa23.81■■□□□ 1.4
HPS3-204ENST00000462030 PANK1Q8TE04 598 aa23.81■■□□□ 1.4
HPS3-204ENST00000462030 SEC24BO95487 1268 aa23.81■■□□□ 1.4
HPS3-204ENST00000462030 COG6Q9Y2V7 657 aa23.81■■□□□ 1.4
HPS3-204ENST00000462030 SPAG9O60271 1321 aaKnown RBP23.8■■□□□ 1.4
HPS3-204ENST00000462030 CENPJQ9HC77 1338 aaPredicted RBP23.8■■□□□ 1.4
HPS3-204ENST00000462030 PDE3AQ14432 1141 aa23.79■■□□□ 1.4
HPS3-204ENST00000462030 CFAP70Q5T0N1 1121 aa23.79■■□□□ 1.4
HPS3-204ENST00000462030 CLUAP1Q96AJ1 413 aa23.79■■□□□ 1.4
HPS3-204ENST00000462030 TET3O43151 1660 aa23.79■■□□□ 1.4
HPS3-204ENST00000462030 ZFYVE16Q7Z3T8 1539 aa23.79■■□□□ 1.4
HPS3-204ENST00000462030 DEPDC5O75140 1603 aa23.79■■□□□ 1.4
HPS3-204ENST00000462030 AFAP1Q8N556 730 aa23.78■■□□□ 1.4
HPS3-204ENST00000462030 ZCCHC11Q5TAX3 1644 aaKnown RBP23.77■■□□□ 1.4
HPS3-204ENST00000462030 ABCA6Q8N139 1617 aa23.77■■□□□ 1.4
HPS3-204ENST00000462030 PRKCSHP14314 528 aaPredicted RBP23.77■■□□□ 1.4
HPS3-204ENST00000462030 CANXP27824 592 aaKnown RBP23.77■■□□□ 1.4
HPS3-204ENST00000462030 WWC1Q8IX03 1113 aa23.77■■□□□ 1.4
HPS3-204ENST00000462030 MAP3K4Q9Y6R4 1608 aa23.75■■□□□ 1.39
HPS3-204ENST00000462030 MAPK8IP3Q9UPT6 1336 aa23.75■■□□□ 1.39
HPS3-204ENST00000462030 NINLQ9Y2I6 1382 aa23.75■■□□□ 1.39
HPS3-204ENST00000462030 UGGT1Q9NYU2 1555 aa23.75■■□□□ 1.39
HPS3-204ENST00000462030 NGEFQ8N5V2 710 aa23.74■■□□□ 1.39
HPS3-204ENST00000462030 NLRP1Q9C000 1473 aa23.74■■□□□ 1.39
HPS3-204ENST00000462030 ADGRF5Q8IZF2 1346 aa23.73■■□□□ 1.39
HPS3-204ENST00000462030 RTEL1-TNFRSF6BF6WH68 1400 aa23.73■■□□□ 1.39
HPS3-204ENST00000462030 POLR3AO14802 1390 aaPredicted RBP23.73■■□□□ 1.39
HPS3-204ENST00000462030 SHPRHQ149N8 1683 aa23.72■■□□□ 1.39
HPS3-204ENST00000462030 NEUROD2Q15784 382 aa23.71■■□□□ 1.39
HPS3-204ENST00000462030 RRP7AQ9Y3A4 280 aaKnown RBP23.71■■□□□ 1.39
HPS3-204ENST00000462030 TNNQ9UQP3 1299 aa23.7■■□□□ 1.38
HPS3-204ENST00000462030 VWDEQ8N2E2 1590 aa23.7■■□□□ 1.38
HPS3-204ENST00000462030 MYOM2P54296 1465 aa23.69■■□□□ 1.38
HPS3-204ENST00000462030 SLKQ9H2G2 1235 aaPredicted RBP23.68■■□□□ 1.38
HPS3-204ENST00000462030 KANK1Q14678 1352 aa23.67■■□□□ 1.38
HPS3-204ENST00000462030 RARSP54136 660 aaKnown RBP23.67■■□□□ 1.38
HPS3-204ENST00000462030 POGKQ9P215 609 aa23.67■■□□□ 1.38
HPS3-204ENST00000462030 NEURL4Q96JN8 1562 aa23.67■■□□□ 1.38
HPS3-204ENST00000462030 RLBP1P12271 317 aa23.67■■□□□ 1.38
HPS3-204ENST00000462030 TNNT2P45379 298 aaPredicted RBP23.67■■□□□ 1.38
HPS3-204ENST00000462030 BECN1Q14457 450 aa23.66■■□□□ 1.38
HPS3-204ENST00000462030 PCDHB15Q9Y5E8 787 aa23.66■■□□□ 1.38
HPS3-204ENST00000462030 IFT172Q9UG01 1749 aa23.66■■□□□ 1.38
HPS3-204ENST00000462030 SLC24A1O60721 1099 aa23.66■■□□□ 1.38
HPS3-204ENST00000462030 MYO3AQ8NEV4 1616 aa23.65■■□□□ 1.38
HPS3-204ENST00000462030 KIF3BO15066 747 aa23.65■■□□□ 1.38
HPS3-204ENST00000462030 NSD3Q9BZ95 1437 aa23.65■■□□□ 1.38
HPS3-204ENST00000462030 IQSEC2Q5JU85 1478 aa23.65■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 447.5 ms