RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 DISP1Q96F81 1524 aa14.98□□□□□ -0.01
CPSF3-202ENST00000460593 GLIPR1L2Q4G1C9 344 aa14.97□□□□□ -0.01
CPSF3-202ENST00000460593 CEP170Q5SW79 1584 aa14.97□□□□□ -0.01
CPSF3-202ENST00000460593 PDZRN3Q9UPQ7 1066 aa14.97□□□□□ -0.01
CPSF3-202ENST00000460593 FSD2A1L4K1 749 aa14.96□□□□□ -0.01
CPSF3-202ENST00000460593 TRAK2O60296 914 aa14.96□□□□□ -0.01
CPSF3-202ENST00000460593 RLBP1P12271 317 aa14.96□□□□□ -0.01
CPSF3-202ENST00000460593 CLCN1P35523 988 aa14.96□□□□□ -0.01
CPSF3-202ENST00000460593 TBC1D32Q96NH3 1257 aa14.96□□□□□ -0.01
CPSF3-202ENST00000460593 TRMT2AQ8IZ69 625 aaKnown RBP14.96□□□□□ -0.01
CPSF3-202ENST00000460593 MFAP1P55081 439 aaKnown RBP14.95□□□□□ -0.02
CPSF3-202ENST00000460593 UPF2Q9HAU5 1272 aaKnown RBP14.95□□□□□ -0.02
CPSF3-202ENST00000460593 TRPM1Q7Z4N2 1603 aa14.95□□□□□ -0.02
CPSF3-202ENST00000460593 A2MP01023 1474 aa14.95□□□□□ -0.02
CPSF3-202ENST00000460593 NKTRP30414 1462 aaKnown RBP14.95□□□□□ -0.02
CPSF3-202ENST00000460593 RAPGEF6Q8TEU7 1601 aa14.94□□□□□ -0.02
CPSF3-202ENST00000460593 CENPJQ9HC77 1338 aaPredicted RBP14.94□□□□□ -0.02
CPSF3-202ENST00000460593 MAPK8IP3Q9UPT6 1336 aa14.94□□□□□ -0.02
CPSF3-202ENST00000460593 TNNT2P45379 298 aaPredicted RBP14.93□□□□□ -0.02
CPSF3-202ENST00000460593 INSRP06213 1382 aa14.92□□□□□ -0.02
CPSF3-202ENST00000460593 CGNL1Q0VF96 1302 aa14.92□□□□□ -0.02
CPSF3-202ENST00000460593 FBLN2P98095 1184 aa14.92□□□□□ -0.02
CPSF3-202ENST00000460593 KIAA0556O60303 1618 aa14.92□□□□□ -0.02
CPSF3-202ENST00000460593 E9PSI1 815 aa14.92□□□□□ -0.02
CPSF3-202ENST00000460593 CROCC2H7BZ55 1655 aa14.91□□□□□ -0.02
CPSF3-202ENST00000460593 TARBP1Q13395 1621 aaKnown RBP14.91□□□□□ -0.02
CPSF3-202ENST00000460593 PLA2R1Q13018 1463 aa14.91□□□□□ -0.02
CPSF3-202ENST00000460593 GPRASP1Q5JY77 1395 aa14.91□□□□□ -0.02
CPSF3-202ENST00000460593 WDR7Q9Y4E6 1490 aa14.91□□□□□ -0.02
CPSF3-202ENST00000460593 GRPEL1Q9HAV7 217 aa14.9□□□□□ -0.02
CPSF3-202ENST00000460593 FOXD4L1Q9NU39 408 aa14.9□□□□□ -0.02
CPSF3-202ENST00000460593 ADAMTS12P58397 1594 aa14.9□□□□□ -0.02
CPSF3-202ENST00000460593 PLEKHD1A6NEE1 506 aa14.9□□□□□ -0.02
CPSF3-202ENST00000460593 ESPNB1AK53 854 aa14.89□□□□□ -0.03
CPSF3-202ENST00000460593 MYH16Q9H6N6 1097 aa14.89□□□□□ -0.03
CPSF3-202ENST00000460593 FAM135AQ9P2D6 1515 aa14.89□□□□□ -0.03
CPSF3-202ENST00000460593 PBRM1Q86U86 1689 aa14.89□□□□□ -0.03
CPSF3-202ENST00000460593 GAS2L3Q86XJ1 694 aa14.89□□□□□ -0.03
CPSF3-202ENST00000460593 PDE3AQ14432 1141 aa14.88□□□□□ -0.03
CPSF3-202ENST00000460593 RRP9O43818 475 aaKnown RBP14.88□□□□□ -0.03
CPSF3-202ENST00000460593 WWC1Q8IX03 1113 aa14.87□□□□□ -0.03
CPSF3-202ENST00000460593 C22orf23Q9BZE7 217 aa14.87□□□□□ -0.03
CPSF3-202ENST00000460593 ITSN2Q9NZM3 1697 aa14.87□□□□□ -0.03
CPSF3-202ENST00000460593 PRDM15P57071 1507 aaPredicted RBP14.87□□□□□ -0.03
CPSF3-202ENST00000460593 PTPRGP23470 1445 aa14.87□□□□□ -0.03
CPSF3-202ENST00000460593 MRE11P49959 708 aa14.87□□□□□ -0.03
CPSF3-202ENST00000460593 CHMP5Q9NZZ3 219 aa14.87□□□□□ -0.03
CPSF3-202ENST00000460593 VIRMAQ69YN4 1812 aaKnown RBP14.86□□□□□ -0.03
CPSF3-202ENST00000460593 EIF4G3O43432 1585 aaKnown RBP14.86□□□□□ -0.03
CPSF3-202ENST00000460593 CDC42BPAQ5VT25 1732 aa14.86□□□□□ -0.03
CPSF3-202ENST00000460593 RARSP54136 660 aaKnown RBP14.85□□□□□ -0.03
CPSF3-202ENST00000460593 ADCY10Q96PN6 1610 aa14.84□□□□□ -0.03
CPSF3-202ENST00000460593 PMFBP1Q8TBY8 1022 aa14.83□□□□□ -0.03
CPSF3-202ENST00000460593 TRIM44Q96DX7 344 aaPredicted RBP14.83□□□□□ -0.03
CPSF3-202ENST00000460593 ARID3AQ99856 593 aa14.83□□□□□ -0.03
CPSF3-202ENST00000460593 RBM10P98175 930 aaKnown RBP14.82□□□□□ -0.04
CPSF3-202ENST00000460593 CARD14Q9BXL6 1004 aa14.81□□□□□ -0.04
CPSF3-202ENST00000460593 ZNF692Q9BU19 519 aaPredicted RBP14.81□□□□□ -0.04
CPSF3-202ENST00000460593 HSCBQ8IWL3 235 aa14.81□□□□□ -0.04
CPSF3-202ENST00000460593 TNPO1Q92973 898 aaKnown RBP14.81□□□□□ -0.04
CPSF3-202ENST00000460593 RTEL1-TNFRSF6BF6WH68 1400 aa14.8□□□□□ -0.04
CPSF3-202ENST00000460593 RWDD1Q9H446 243 aaPredicted RBP14.79□□□□□ -0.04
CPSF3-202ENST00000460593 ASXL1Q8IXJ9 1541 aa14.79□□□□□ -0.04
CPSF3-202ENST00000460593 PIK3C2GO75747 1445 aa14.79□□□□□ -0.04
CPSF3-202ENST00000460593 TCP11L2Q8N4U5 519 aa14.79□□□□□ -0.04
CPSF3-202ENST00000460593 KIAA1211Q6ZU35 1233 aa14.78□□□□□ -0.04
CPSF3-202ENST00000460593 SHANK2Q9UPX8 1470 aa14.78□□□□□ -0.04
CPSF3-202ENST00000460593 ABCC10Q5T3U5 1492 aa14.77□□□□□ -0.04
CPSF3-202ENST00000460593 CHMP7Q8WUX9 453 aaPredicted RBP14.77□□□□□ -0.05
CPSF3-202ENST00000460593 CLASP1Q7Z460 1538 aa14.77□□□□□ -0.05
CPSF3-202ENST00000460593 TSR2Q969E8 191 aaKnown RBP14.77□□□□□ -0.05
CPSF3-202ENST00000460593 MAGI1Q96QZ7 1491 aaPredicted RBP14.76□□□□□ -0.05
CPSF3-202ENST00000460593 DDX11L8A8MPP1 907 aa14.76□□□□□ -0.05
CPSF3-202ENST00000460593 CD2BP2O95400 341 aaKnown RBP14.76□□□□□ -0.05
CPSF3-202ENST00000460593 FTSJ3Q8IY81 847 aaKnown RBP14.76□□□□□ -0.05
CPSF3-202ENST00000460593 MYO5CQ9NQX4 1742 aa14.75□□□□□ -0.05
CPSF3-202ENST00000460593 JPH4Q96JJ6 628 aa14.75□□□□□ -0.05
CPSF3-202ENST00000460593 HSP90AB1P08238 724 aaKnown RBP14.75□□□□□ -0.05
CPSF3-202ENST00000460593 RBM42Q9BTD8 480 aaKnown RBP14.75□□□□□ -0.05
CPSF3-202ENST00000460593 ABCC2Q92887 1545 aa14.74□□□□□ -0.05
CPSF3-202ENST00000460593 CCDC141Q6ZP82 1450 aa14.74□□□□□ -0.05
CPSF3-202ENST00000460593 MVPQ14764 893 aaKnown RBP14.74□□□□□ -0.05
CPSF3-202ENST00000460593 ATP10BO94823 1461 aa14.74□□□□□ -0.05
CPSF3-202ENST00000460593 ITPRIPQ8IWB1 547 aa14.73□□□□□ -0.05
CPSF3-202ENST00000460593 ZBTB7CA1YPR0 619 aa14.73□□□□□ -0.05
CPSF3-202ENST00000460593 CDCA8Q53HL2 280 aa14.73□□□□□ -0.05
CPSF3-202ENST00000460593 LNPKQ9C0E8 428 aa14.73□□□□□ -0.05
CPSF3-202ENST00000460593 GRIN2AQ12879 1464 aa14.73□□□□□ -0.05
CPSF3-202ENST00000460593 SSFA2P28290 1259 aa14.72□□□□□ -0.05
CPSF3-202ENST00000460593 CFAP70Q5T0N1 1121 aa14.72□□□□□ -0.05
CPSF3-202ENST00000460593 DZIP1LQ8IYY4 767 aaKnown RBP14.71□□□□□ -0.05
CPSF3-202ENST00000460593 FAM13BQ9NYF5 915 aa14.71□□□□□ -0.05
CPSF3-202ENST00000460593 NINLQ9Y2I6 1382 aa14.7□□□□□ -0.06
CPSF3-202ENST00000460593 DDIT3P35638 169 aa14.7□□□□□ -0.06
CPSF3-202ENST00000460593 MORC1Q86VD1 984 aa14.7□□□□□ -0.06
CPSF3-202ENST00000460593 RUNDC1Q96C34 613 aa14.7□□□□□ -0.06
CPSF3-202ENST00000460593 SMC4Q9NTJ3 1288 aa14.7□□□□□ -0.06
CPSF3-202ENST00000460593 SYNJ2O15056 1496 aa14.69□□□□□ -0.06
CPSF3-202ENST00000460593 NASPP49321 788 aaPredicted RBP14.69□□□□□ -0.06
CPSF3-202ENST00000460593 RIPK4P57078 832 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms