RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 MSH5O43196 834 aa15.81■□□□□ 0.12
SYNE2-207ENST00000458046 STRCQ7RTU9 1775 aa15.81■□□□□ 0.12
SYNE2-207ENST00000458046 ERICH6BQ5W0A0 696 aa15.81■□□□□ 0.12
SYNE2-207ENST00000458046 VASPP50552 380 aaPredicted RBP15.81■□□□□ 0.12
SYNE2-207ENST00000458046 CARMIL2Q6F5E8 1435 aa15.8■□□□□ 0.12
SYNE2-207ENST00000458046 ASXL2Q76L83 1435 aa15.8■□□□□ 0.12
SYNE2-207ENST00000458046 DHX29Q7Z478 1369 aaKnown RBP15.8■□□□□ 0.12
SYNE2-207ENST00000458046 TSPY4P0CV99 314 aa15.79■□□□□ 0.12
SYNE2-207ENST00000458046 TSPY10P0CW01 314 aa15.79■□□□□ 0.12
SYNE2-207ENST00000458046 HNRNPMP52272 730 aaKnown RBP eCLIP15.79■□□□□ 0.12
SYNE2-207ENST00000458046 CARD11Q9BXL7 1154 aa15.79■□□□□ 0.12
SYNE2-207ENST00000458046 ARAP3Q8WWN8 1544 aa15.79■□□□□ 0.12
SYNE2-207ENST00000458046 ADGRL2O95490 1459 aa15.78■□□□□ 0.12
SYNE2-207ENST00000458046 MBD5Q9P267 1494 aa15.78■□□□□ 0.12
SYNE2-207ENST00000458046 RIMS1Q86UR5 1692 aaKnown RBP15.78■□□□□ 0.12
SYNE2-207ENST00000458046 ITSN2Q9NZM3 1697 aa15.76■□□□□ 0.11
SYNE2-207ENST00000458046 DCAF11Q8TEB1 546 aa15.76■□□□□ 0.11
SYNE2-207ENST00000458046 SENP3Q9H4L4 574 aaPredicted RBP15.75■□□□□ 0.11
SYNE2-207ENST00000458046 ADGBQ8N7X0 1667 aa15.75■□□□□ 0.11
SYNE2-207ENST00000458046 C9orf84Q5VXU9 1444 aa15.75■□□□□ 0.11
SYNE2-207ENST00000458046 ST20-MTHFSA0A0A6YYL1 179 aa15.74■□□□□ 0.11
SYNE2-207ENST00000458046 ATP10BO94823 1461 aa15.73■□□□□ 0.11
SYNE2-207ENST00000458046 TMC1Q8TDI8 760 aa15.73■□□□□ 0.11
SYNE2-207ENST00000458046 FANCIQ9NVI1 1328 aa15.72■□□□□ 0.11
SYNE2-207ENST00000458046 AAMPQ13685 434 aa15.71■□□□□ 0.11
SYNE2-207ENST00000458046 AEBP1Q8IUX7 1158 aa15.71■□□□□ 0.11
SYNE2-207ENST00000458046 POLR1AO95602 1720 aaPredicted RBP15.71■□□□□ 0.11
SYNE2-207ENST00000458046 RGL2O15211 777 aa15.71■□□□□ 0.1
SYNE2-207ENST00000458046 MFAP1P55081 439 aaKnown RBP15.71■□□□□ 0.1
SYNE2-207ENST00000458046 PNISRQ8TF01 805 aaKnown RBP15.71■□□□□ 0.1
SYNE2-207ENST00000458046 ARID4BQ4LE39 1312 aaPredicted RBP15.7■□□□□ 0.1
SYNE2-207ENST00000458046 NUDCQ9Y266 331 aa15.7■□□□□ 0.1
SYNE2-207ENST00000458046 CROCC2H7BZ55 1655 aa15.7■□□□□ 0.1
SYNE2-207ENST00000458046 KIF15Q9NS87 1388 aa15.7■□□□□ 0.1
SYNE2-207ENST00000458046 TTC37Q6PGP7 1564 aa15.7■□□□□ 0.1
SYNE2-207ENST00000458046 PSMD1Q99460 953 aa15.7■□□□□ 0.1
SYNE2-207ENST00000458046 KDM5CP41229 1560 aa15.69■□□□□ 0.1
SYNE2-207ENST00000458046 NAP1L5Q96NT1 182 aaPredicted RBP15.69■□□□□ 0.1
SYNE2-207ENST00000458046 PRDM16Q9HAZ2 1276 aa15.69■□□□□ 0.1
SYNE2-207ENST00000458046 UHRF1BP1Q6BDS2 1440 aa15.69■□□□□ 0.1
SYNE2-207ENST00000458046 SMG6Q86US8 1419 aaKnown RBP15.69■□□□□ 0.1
SYNE2-207ENST00000458046 PPM1GO15355 546 aaPredicted RBP15.68■□□□□ 0.1
SYNE2-207ENST00000458046 RGL3Q3MIN7 710 aa15.68■□□□□ 0.1
SYNE2-207ENST00000458046 LMOD2Q6P5Q4 547 aa15.68■□□□□ 0.1
SYNE2-207ENST00000458046 RALGAPBQ86X10 1494 aa15.67■□□□□ 0.1
SYNE2-207ENST00000458046 CDC42BPAQ5VT25 1732 aa15.67■□□□□ 0.1
SYNE2-207ENST00000458046 ABCA8O94911 1581 aa15.66■□□□□ 0.1
SYNE2-207ENST00000458046 ROCK2O75116 1388 aaKnown RBP15.66■□□□□ 0.1
SYNE2-207ENST00000458046 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.66■□□□□ 0.1
SYNE2-207ENST00000458046 CLSTN1O94985 981 aa15.65■□□□□ 0.1
SYNE2-207ENST00000458046 SHANK2Q9UPX8 1470 aa15.64■□□□□ 0.09
SYNE2-207ENST00000458046 SALL2Q9Y467 1007 aaPredicted RBP15.64■□□□□ 0.09
SYNE2-207ENST00000458046 PTPRGP23470 1445 aa15.63■□□□□ 0.09
SYNE2-207ENST00000458046 CCDC82Q8N4S0 544 aa15.63■□□□□ 0.09
SYNE2-207ENST00000458046 ECM2O94769 699 aaPredicted RBP15.63■□□□□ 0.09
SYNE2-207ENST00000458046 TMCO4Q5TGY1 634 aa15.62■□□□□ 0.09
SYNE2-207ENST00000458046 ZNF526Q8TF50 670 aaPredicted RBP15.62■□□□□ 0.09
SYNE2-207ENST00000458046 HSPA2P54652 639 aa15.62■□□□□ 0.09
SYNE2-207ENST00000458046 NBPF1Q3BBV0 1214 aa15.62■□□□□ 0.09
SYNE2-207ENST00000458046 PRDM10Q9NQV6 1147 aa15.62■□□□□ 0.09
SYNE2-207ENST00000458046 MYBBP1AQ9BQG0 1328 aaKnown RBP15.61■□□□□ 0.09
SYNE2-207ENST00000458046 POGZQ7Z3K3 1410 aa15.6■□□□□ 0.09
SYNE2-207ENST00000458046 ARHGEF12Q9NZN5 1544 aa15.6■□□□□ 0.09
SYNE2-207ENST00000458046 RNF123Q5XPI4 1314 aa15.6■□□□□ 0.09
SYNE2-207ENST00000458046 RALBP1Q15311 655 aa15.6■□□□□ 0.09
SYNE2-207ENST00000458046 MAPK8IP2Q13387 824 aaPredicted RBP15.59■□□□□ 0.09
SYNE2-207ENST00000458046 SLC24A3Q9HC58 644 aa15.59■□□□□ 0.09
SYNE2-207ENST00000458046 KDM5DQ9BY66 1539 aa15.58■□□□□ 0.08
SYNE2-207ENST00000458046 CC2D2BQ6DHV5 1058 aa15.58■□□□□ 0.08
SYNE2-207ENST00000458046 BRD4O60885 1362 aaPredicted RBP15.57■□□□□ 0.08
SYNE2-207ENST00000458046 CCDC144AA2RUR9 1427 aa15.57■□□□□ 0.08
SYNE2-207ENST00000458046 CCDC141Q6ZP82 1450 aa15.57■□□□□ 0.08
SYNE2-207ENST00000458046 FAM135AQ9P2D6 1515 aa15.56■□□□□ 0.08
SYNE2-207ENST00000458046 LRPPRCP42704 1394 aaKnown RBP15.56■□□□□ 0.08
SYNE2-207ENST00000458046 GZF1Q9H116 711 aaPredicted RBP15.55■□□□□ 0.08
SYNE2-207ENST00000458046 SAMD9LQ8IVG5 1584 aa15.55■□□□□ 0.08
SYNE2-207ENST00000458046 ARHGEF5Q12774 1597 aa15.54■□□□□ 0.08
SYNE2-207ENST00000458046 E9PSI1 815 aa15.54■□□□□ 0.08
SYNE2-207ENST00000458046 CC2D1BQ5T0F9 858 aaKnown RBP15.54■□□□□ 0.08
SYNE2-207ENST00000458046 PRAG1Q86YV5 1406 aa15.54■□□□□ 0.08
SYNE2-207ENST00000458046 ARHGEF40Q8TER5 1519 aa15.53■□□□□ 0.08
SYNE2-207ENST00000458046 NLRP13Q86W25 1043 aa15.53■□□□□ 0.08
SYNE2-207ENST00000458046 KDM4AO75164 1064 aa15.52■□□□□ 0.08
SYNE2-207ENST00000458046 KTN1Q86UP2 1357 aaKnown RBP15.52■□□□□ 0.08
SYNE2-207ENST00000458046 UBAP1LF5GYI3 381 aa15.52■□□□□ 0.07
SYNE2-207ENST00000458046 PER1O15534 1290 aaPredicted RBP15.52■□□□□ 0.07
SYNE2-207ENST00000458046 CCDC27Q2M243 656 aa15.52■□□□□ 0.07
SYNE2-207ENST00000458046 PLA2R1Q13018 1463 aa15.52■□□□□ 0.07
SYNE2-207ENST00000458046 SETD1BQ9UPS6 1966 aaKnown RBP15.51■□□□□ 0.07
SYNE2-207ENST00000458046 SYCP2Q9BX26 1530 aa15.51■□□□□ 0.07
SYNE2-207ENST00000458046 CDC42BPBQ9Y5S2 1711 aa15.5■□□□□ 0.07
SYNE2-207ENST00000458046 ARHGAP5Q13017 1502 aa15.5■□□□□ 0.07
SYNE2-207ENST00000458046 FANCAO15360 1455 aa15.5■□□□□ 0.07
SYNE2-207ENST00000458046 RRP1P56182 461 aaKnown RBP15.5■□□□□ 0.07
SYNE2-207ENST00000458046 EXOC6Q8TAG9 804 aa15.5■□□□□ 0.07
SYNE2-207ENST00000458046 TRAIPQ9BWF2 469 aa15.5■□□□□ 0.07
SYNE2-207ENST00000458046 PANK3Q9H999 370 aa15.5■□□□□ 0.07
SYNE2-207ENST00000458046 FER1L4A9Z1Z3 1794 aa15.49■□□□□ 0.07
SYNE2-207ENST00000458046 PLEKHH2Q8IVE3 1493 aa15.49■□□□□ 0.07
SYNE2-207ENST00000458046 CDCA7LQ96GN5 454 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms