RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 MAST1Q9Y2H9 1570 aa26.69■■□□□ 1.86
SF3B4-202ENST00000457312 MTUS2Q5JR59 1369 aa26.67■■□□□ 1.86
SF3B4-202ENST00000457312 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.66■■□□□ 1.86
SF3B4-202ENST00000457312 QTRT2Q9H974 415 aaKnown RBP26.65■■□□□ 1.86
SF3B4-202ENST00000457312 ARHGEF5Q12774 1597 aa26.65■■□□□ 1.86
SF3B4-202ENST00000457312 ARHGAP31Q2M1Z3 1444 aa26.64■■□□□ 1.85
SF3B4-202ENST00000457312 EHBP1L1Q8N3D4 1523 aa26.62■■□□□ 1.85
SF3B4-202ENST00000457312 NCOA3Q9Y6Q9 1424 aa26.58■■□□□ 1.85
SF3B4-202ENST00000457312 C8orf37Q96NL8 207 aa26.58■■□□□ 1.85
SF3B4-202ENST00000457312 NHSL1Q5SYE7 1610 aa26.57■■□□□ 1.84
SF3B4-202ENST00000457312 CEP162Q5TB80 1403 aa26.56■■□□□ 1.84
SF3B4-202ENST00000457312 SETD5Q9C0A6 1442 aa26.56■■□□□ 1.84
SF3B4-202ENST00000457312 RSPH4AQ5TD94 716 aa26.56■■□□□ 1.84
SF3B4-202ENST00000457312 STAG3Q9UJ98 1225 aa26.54■■□□□ 1.84
SF3B4-202ENST00000457312 ADGRB3O60242 1522 aa26.54■■□□□ 1.84
SF3B4-202ENST00000457312 NGLY1Q96IV0 654 aa26.53■■□□□ 1.84
SF3B4-202ENST00000457312 ASXL1Q8IXJ9 1541 aa26.53■■□□□ 1.84
SF3B4-202ENST00000457312 BRINP3Q76B58 766 aa26.52■■□□□ 1.84
SF3B4-202ENST00000457312 CADPS2Q86UW7 1296 aa26.51■■□□□ 1.83
SF3B4-202ENST00000457312 TSPY4P0CV99 314 aa26.46■■□□□ 1.83
SF3B4-202ENST00000457312 TSPY10P0CW01 314 aa26.46■■□□□ 1.83
SF3B4-202ENST00000457312 C14orf37Q86TY3 774 aa26.46■■□□□ 1.83
SF3B4-202ENST00000457312 CCDC125Q86Z20 511 aa26.46■■□□□ 1.83
SF3B4-202ENST00000457312 PNPLA6Q8IY17 1366 aa26.46■■□□□ 1.83
SF3B4-202ENST00000457312 IDI1Q13907 227 aa26.45■■□□□ 1.82
SF3B4-202ENST00000457312 ATF3P18847 181 aa26.44■■□□□ 1.82
SF3B4-202ENST00000457312 C19orf44Q9H6X5 657 aa26.43■■□□□ 1.82
SF3B4-202ENST00000457312 MYO5BQ9ULV0 1848 aa26.43■■□□□ 1.82
SF3B4-202ENST00000457312 BCANQ96GW7 911 aa26.42■■□□□ 1.82
SF3B4-202ENST00000457312 PLEKHG1Q9ULL1 1385 aa26.42■■□□□ 1.82
SF3B4-202ENST00000457312 DUOX2Q9NRD8 1548 aa26.41■■□□□ 1.82
SF3B4-202ENST00000457312 ZFYVE9O95405 1425 aa26.4■■□□□ 1.82
SF3B4-202ENST00000457312 ATRNO75882 1429 aa26.39■■□□□ 1.81
SF3B4-202ENST00000457312 DCCP43146 1447 aa26.37■■□□□ 1.81
SF3B4-202ENST00000457312 LRRC59Q96AG4 307 aaKnown RBP26.36■■□□□ 1.81
SF3B4-202ENST00000457312 TRPC5Q9UL62 973 aaPredicted RBP26.36■■□□□ 1.81
SF3B4-202ENST00000457312 ADAMTS2O95450 1211 aa26.34■■□□□ 1.81
SF3B4-202ENST00000457312 NOS1P29475 1434 aa26.33■■□□□ 1.81
SF3B4-202ENST00000457312 BLMP54132 1417 aaPredicted RBP26.33■■□□□ 1.81
SF3B4-202ENST00000457312 MST1RQ04912 1400 aa26.33■■□□□ 1.81
SF3B4-202ENST00000457312 USP21Q9UK80 565 aa26.33■■□□□ 1.81
SF3B4-202ENST00000457312 LMTK2Q8IWU2 1503 aa26.31■■□□□ 1.8
SF3B4-202ENST00000457312 GCC2Q8IWJ2 1684 aa26.31■■□□□ 1.8
SF3B4-202ENST00000457312 ADAMTS13Q76LX8 1427 aa26.3■■□□□ 1.8
SF3B4-202ENST00000457312 TBX22Q9Y458 520 aa26.29■■□□□ 1.8
SF3B4-202ENST00000457312 BCL9LQ86UU0 1499 aa26.29■■□□□ 1.8
SF3B4-202ENST00000457312 ERBINQ96RT1 1412 aa26.28■■□□□ 1.8
SF3B4-202ENST00000457312 RIMS2Q9UQ26 1411 aa26.28■■□□□ 1.8
SF3B4-202ENST00000457312 DEFB132Q7Z7B7 95 aa26.27■■□□□ 1.8
SF3B4-202ENST00000457312 DDX17Q92841 729 aaKnown RBP26.26■■□□□ 1.79
SF3B4-202ENST00000457312 FNBP4Q8N3X1 1017 aaPredicted RBP26.25■■□□□ 1.79
SF3B4-202ENST00000457312 PIK3R4Q99570 1358 aa26.24■■□□□ 1.79
SF3B4-202ENST00000457312 TRPM2O94759 1503 aa26.24■■□□□ 1.79
SF3B4-202ENST00000457312 PTCH1Q13635 1447 aa26.23■■□□□ 1.79
SF3B4-202ENST00000457312 PPP1R15AO75807 674 aaPredicted RBP26.23■■□□□ 1.79
SF3B4-202ENST00000457312 LAMC1P11047 1609 aa26.23■■□□□ 1.79
SF3B4-202ENST00000457312 UNC13BO14795 1591 aa26.23■■□□□ 1.79
SF3B4-202ENST00000457312 BRWD3Q6RI45 1802 aa26.23■■□□□ 1.79
SF3B4-202ENST00000457312 TMEM131LA2VDJ0 1609 aa26.22■■□□□ 1.79
SF3B4-202ENST00000457312 KIF15Q9NS87 1388 aa26.21■■□□□ 1.79
SF3B4-202ENST00000457312 HRCP23327 699 aa26.21■■□□□ 1.79
SF3B4-202ENST00000457312 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.21■■□□□ 1.79
SF3B4-202ENST00000457312 SPHKAPQ2M3C7 1700 aa26.2■■□□□ 1.79
SF3B4-202ENST00000457312 XRN1Q8IZH2 1706 aaKnown RBP26.2■■□□□ 1.79
SF3B4-202ENST00000457312 PTPRUQ92729 1446 aa26.2■■□□□ 1.78
SF3B4-202ENST00000457312 KANK1Q14678 1352 aa26.2■■□□□ 1.78
SF3B4-202ENST00000457312 YY1P25490 414 aa26.19■■□□□ 1.78
SF3B4-202ENST00000457312 MARF1Q9Y4F3 1742 aaKnown RBP26.19■■□□□ 1.78
SF3B4-202ENST00000457312 COL22A1Q8NFW1 1626 aaPredicted RBP26.18■■□□□ 1.78
SF3B4-202ENST00000457312 PSDA5PKW4 1024 aaPredicted RBP26.18■■□□□ 1.78
SF3B4-202ENST00000457312 CROCC2H7BZ55 1655 aa26.18■■□□□ 1.78
SF3B4-202ENST00000457312 IFFO2Q5TF58 517 aa26.17■■□□□ 1.78
SF3B4-202ENST00000457312 SLC52A1Q9NWF4 448 aa26.17■■□□□ 1.78
SF3B4-202ENST00000457312 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.16■■□□□ 1.78
SF3B4-202ENST00000457312 GLI3P10071 1580 aa26.13■■□□□ 1.77
SF3B4-202ENST00000457312 NALCNQ8IZF0 1738 aa26.12■■□□□ 1.77
SF3B4-202ENST00000457312 AMOTL2Q9Y2J4 779 aa26.11■■□□□ 1.77
SF3B4-202ENST00000457312 HDGFP51858 240 aaKnown RBP26.09■■□□□ 1.77
SF3B4-202ENST00000457312 GJD4Q96KN9 370 aaPredicted RBP26.09■■□□□ 1.77
SF3B4-202ENST00000457312 MYOM2P54296 1465 aa26.09■■□□□ 1.77
SF3B4-202ENST00000457312 SF3B2Q13435 895 aaKnown RBP26.08■■□□□ 1.77
SF3B4-202ENST00000457312 ADGRL3Q9HAR2 1447 aa26.07■■□□□ 1.76
SF3B4-202ENST00000457312 RALGAPBQ86X10 1494 aa26.05■■□□□ 1.76
SF3B4-202ENST00000457312 SOS2Q07890 1332 aaPredicted RBP26.05■■□□□ 1.76
SF3B4-202ENST00000457312 MYOM3Q5VTT5 1437 aa26.05■■□□□ 1.76
SF3B4-202ENST00000457312 RPRD2Q5VT52 1461 aaKnown RBP26.04■■□□□ 1.76
SF3B4-202ENST00000457312 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.04■■□□□ 1.76
SF3B4-202ENST00000457312 NRXN3Q9Y4C0 1643 aa26.03■■□□□ 1.76
SF3B4-202ENST00000457312 RRP7BPQ9NSQ0 103 aa26.03■■□□□ 1.76
SF3B4-202ENST00000457312 C1orf167Q5SNV9 1468 aa26.03■■□□□ 1.76
SF3B4-202ENST00000457312 ABCC5O15440 1437 aa25.97■■□□□ 1.75
SF3B4-202ENST00000457312 SLIT2O94813 1529 aa25.92■■□□□ 1.74
SF3B4-202ENST00000457312 PTPN23Q9H3S7 1636 aa25.92■■□□□ 1.74
SF3B4-202ENST00000457312 BAG6P46379 1132 aa25.91■■□□□ 1.74
SF3B4-202ENST00000457312 R3HDM1Q15032 1099 aaKnown RBP25.9■■□□□ 1.74
SF3B4-202ENST00000457312 RGPD1P0DJD0 1748 aa25.88■■□□□ 1.73
SF3B4-202ENST00000457312 CHGAP10645 457 aaKnown RBP25.88■■□□□ 1.73
SF3B4-202ENST00000457312 SEPT12Q8IYM1 358 aa25.88■■□□□ 1.73
SF3B4-202ENST00000457312 UNC5CLQ8IV45 518 aa25.87■■□□□ 1.73
SF3B4-202ENST00000457312 ORAI2Q96SN7 254 aa25.87■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms