RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 ERVK-7P63135 1459 aa12.98□□□□□ -0.33
SYNE1-214ENST00000454018 PIK3C2BO00750 1634 aa12.97□□□□□ -0.33
SYNE1-214ENST00000454018 SYNMO15061 1565 aa12.97□□□□□ -0.33
SYNE1-214ENST00000454018 KDM5AP29375 1690 aaKnown RBP12.96□□□□□ -0.33
SYNE1-214ENST00000454018 KIF1BO60333 1816 aa12.96□□□□□ -0.33
SYNE1-214ENST00000454018 TRPM2O94759 1503 aa12.96□□□□□ -0.33
SYNE1-214ENST00000454018 CFAP44Q96MT7 982 aa12.95□□□□□ -0.34
SYNE1-214ENST00000454018 MYO5BQ9ULV0 1848 aa12.94□□□□□ -0.34
SYNE1-214ENST00000454018 NOS1P29475 1434 aa12.94□□□□□ -0.34
SYNE1-214ENST00000454018 ECM2O94769 699 aaPredicted RBP12.93□□□□□ -0.34
SYNE1-214ENST00000454018 CLTCL1P53675 1640 aa12.92□□□□□ -0.34
SYNE1-214ENST00000454018 UBR1Q8IWV7 1749 aa12.92□□□□□ -0.34
SYNE1-214ENST00000454018 CEP170BQ9Y4F5 1589 aaPredicted RBP12.92□□□□□ -0.34
SYNE1-214ENST00000454018 MPHOSPH9Q99550 1183 aa12.92□□□□□ -0.34
SYNE1-214ENST00000454018 NLRP1Q9C000 1473 aa12.91□□□□□ -0.34
SYNE1-214ENST00000454018 PTPRTO14522 1441 aa12.91□□□□□ -0.34
SYNE1-214ENST00000454018 TNRQ92752 1358 aa12.91□□□□□ -0.34
SYNE1-214ENST00000454018 SPOCK2Q92563 424 aa12.9□□□□□ -0.34
SYNE1-214ENST00000454018 CEBPAP49715 358 aaPredicted RBP12.89□□□□□ -0.35
SYNE1-214ENST00000454018 POLA2Q14181 598 aa12.89□□□□□ -0.35
SYNE1-214ENST00000454018 ADGRB3O60242 1522 aa12.89□□□□□ -0.35
SYNE1-214ENST00000454018 UGGT1Q9NYU2 1555 aa12.89□□□□□ -0.35
SYNE1-214ENST00000454018 DHX57Q6P158 1386 aaKnown RBP12.88□□□□□ -0.35
SYNE1-214ENST00000454018 UHRF1BP1Q6BDS2 1440 aa12.88□□□□□ -0.35
SYNE1-214ENST00000454018 A2ML1A8K2U0 1454 aa12.88□□□□□ -0.35
SYNE1-214ENST00000454018 TMEM131LA2VDJ0 1609 aa12.88□□□□□ -0.35
SYNE1-214ENST00000454018 KLHL34Q8N239 644 aa12.88□□□□□ -0.35
SYNE1-214ENST00000454018 PLA2R1Q13018 1463 aa12.87□□□□□ -0.35
SYNE1-214ENST00000454018 FBXO31Q5XUX0 539 aaPredicted RBP12.87□□□□□ -0.35
SYNE1-214ENST00000454018 NEURL4Q96JN8 1562 aa12.87□□□□□ -0.35
SYNE1-214ENST00000454018 POLR1AO95602 1720 aaPredicted RBP12.87□□□□□ -0.35
SYNE1-214ENST00000454018 CCDC144AA2RUR9 1427 aa12.86□□□□□ -0.35
SYNE1-214ENST00000454018 LMTK3Q96Q04 1460 aa12.85□□□□□ -0.35
SYNE1-214ENST00000454018 IFT172Q9UG01 1749 aa12.85□□□□□ -0.35
SYNE1-214ENST00000454018 SPINK5Q9NQ38 1064 aaPredicted RBP12.84□□□□□ -0.35
SYNE1-214ENST00000454018 TSHZ2Q9NRE2 1034 aa12.84□□□□□ -0.35
SYNE1-214ENST00000454018 SLC52A1Q9NWF4 448 aa12.84□□□□□ -0.35
SYNE1-214ENST00000454018 ANKRD30BQ9BXX2 1392 aa12.84□□□□□ -0.35
SYNE1-214ENST00000454018 PPLO60437 1756 aa12.83□□□□□ -0.35
SYNE1-214ENST00000454018 RGL2O15211 777 aa12.83□□□□□ -0.36
SYNE1-214ENST00000454018 SLIT1O75093 1534 aa12.8□□□□□ -0.36
SYNE1-214ENST00000454018 SPRYD3Q8NCJ5 442 aa12.79□□□□□ -0.36
SYNE1-214ENST00000454018 CLSPNQ9HAW4 1339 aa12.78□□□□□ -0.36
SYNE1-214ENST00000454018 IDI1Q13907 227 aa12.78□□□□□ -0.36
SYNE1-214ENST00000454018 NEXMIFQ5QGS0 1516 aa12.78□□□□□ -0.36
SYNE1-214ENST00000454018 ARHGAP23Q9P227 1491 aa12.78□□□□□ -0.36
SYNE1-214ENST00000454018 SPATA31E1Q6ZUB1 1445 aa12.78□□□□□ -0.36
SYNE1-214ENST00000454018 STRCQ7RTU9 1775 aa12.77□□□□□ -0.36
SYNE1-214ENST00000454018 STAG3Q9UJ98 1225 aa12.76□□□□□ -0.37
SYNE1-214ENST00000454018 IQGAP1P46940 1657 aa12.75□□□□□ -0.37
SYNE1-214ENST00000454018 ZFYVE9O95405 1425 aa12.75□□□□□ -0.37
SYNE1-214ENST00000454018 THEMISQ8N1K5 641 aaPredicted RBP12.74□□□□□ -0.37
SYNE1-214ENST00000454018 TMEM2Q9UHN6 1383 aa12.74□□□□□ -0.37
SYNE1-214ENST00000454018 SCAF11Q99590 1463 aaKnown RBP12.73□□□□□ -0.37
SYNE1-214ENST00000454018 CCER1Q8TC90 406 aaPredicted RBP12.72□□□□□ -0.37
SYNE1-214ENST00000454018 LAMC1P11047 1609 aa12.72□□□□□ -0.37
SYNE1-214ENST00000454018 MYOM2P54296 1465 aa12.72□□□□□ -0.37
SYNE1-214ENST00000454018 RIMS2Q9UQ26 1411 aa12.72□□□□□ -0.37
SYNE1-214ENST00000454018 CHGAP10645 457 aaKnown RBP12.72□□□□□ -0.37
SYNE1-214ENST00000454018 DIP2AQ14689 1571 aa12.7□□□□□ -0.38
SYNE1-214ENST00000454018 NRXN3Q9Y4C0 1643 aa12.7□□□□□ -0.38
SYNE1-214ENST00000454018 SETD1AO15047 1707 aaKnown RBP12.7□□□□□ -0.38
SYNE1-214ENST00000454018 MED14O60244 1454 aa12.7□□□□□ -0.38
SYNE1-214ENST00000454018 SETBP1Q9Y6X0 1596 aa12.7□□□□□ -0.38
SYNE1-214ENST00000454018 RPGRIP1LQ68CZ1 1315 aa12.7□□□□□ -0.38
SYNE1-214ENST00000454018 ZNF326Q5BKZ1 582 aaKnown RBP12.69□□□□□ -0.38
SYNE1-214ENST00000454018 KIAA1210Q9ULL0 1709 aa12.69□□□□□ -0.38
SYNE1-214ENST00000454018 HSPA2P54652 639 aa12.68□□□□□ -0.38
SYNE1-214ENST00000454018 CAPN15O75808 1086 aa12.67□□□□□ -0.38
SYNE1-214ENST00000454018 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.67□□□□□ -0.38
SYNE1-214ENST00000454018 EID1Q9Y6B2 187 aa12.67□□□□□ -0.38
SYNE1-214ENST00000454018 NRXN1Q9ULB1 1477 aa12.67□□□□□ -0.38
SYNE1-214ENST00000454018 TONSLQ96HA7 1378 aa12.67□□□□□ -0.38
SYNE1-214ENST00000454018 HDGFP51858 240 aaKnown RBP12.67□□□□□ -0.38
SYNE1-214ENST00000454018 SIN3AQ96ST3 1273 aa12.67□□□□□ -0.38
SYNE1-214ENST00000454018 PLEKHG1Q9ULL1 1385 aa12.66□□□□□ -0.38
SYNE1-214ENST00000454018 RGL3Q3MIN7 710 aa12.66□□□□□ -0.38
SYNE1-214ENST00000454018 ANKLE2Q86XL3 938 aa12.66□□□□□ -0.38
SYNE1-214ENST00000454018 PLCD3Q8N3E9 789 aa12.66□□□□□ -0.38
SYNE1-214ENST00000454018 NPHP4O75161 1426 aaPredicted RBP12.66□□□□□ -0.38
SYNE1-214ENST00000454018 PIK3C2GO75747 1445 aa12.65□□□□□ -0.38
SYNE1-214ENST00000454018 PPP1R15AO75807 674 aaPredicted RBP12.65□□□□□ -0.38
SYNE1-214ENST00000454018 NEUROD1Q13562 356 aa12.65□□□□□ -0.38
SYNE1-214ENST00000454018 TXNDC2Q86VQ3 553 aa12.64□□□□□ -0.39
SYNE1-214ENST00000454018 STAC3Q96MF2 364 aa12.64□□□□□ -0.39
SYNE1-214ENST00000454018 TRPM1Q7Z4N2 1603 aa12.64□□□□□ -0.39
SYNE1-214ENST00000454018 CHD2O14647 1828 aaKnown RBP12.64□□□□□ -0.39
SYNE1-214ENST00000454018 VGFO15240 615 aaPredicted RBP12.63□□□□□ -0.39
SYNE1-214ENST00000454018 LTKP29376 864 aa12.63□□□□□ -0.39
SYNE1-214ENST00000454018 ALKQ9UM73 1620 aa12.63□□□□□ -0.39
SYNE1-214ENST00000454018 ZBTB12Q9Y330 459 aaPredicted RBP12.62□□□□□ -0.39
SYNE1-214ENST00000454018 KNDC1Q76NI1 1749 aa12.62□□□□□ -0.39
SYNE1-214ENST00000454018 PRAG1Q86YV5 1406 aa12.61□□□□□ -0.39
SYNE1-214ENST00000454018 NWD1Q149M9 1564 aa12.61□□□□□ -0.39
SYNE1-214ENST00000454018 DCAF11Q8TEB1 546 aa12.61□□□□□ -0.39
SYNE1-214ENST00000454018 TIMELESSQ9UNS1 1208 aa12.61□□□□□ -0.39
SYNE1-214ENST00000454018 NCKAP5LQ9HCH0 1330 aa12.61□□□□□ -0.39
SYNE1-214ENST00000454018 ADAMTS13Q76LX8 1427 aa12.6□□□□□ -0.39
SYNE1-214ENST00000454018 XRN1Q8IZH2 1706 aaKnown RBP12.6□□□□□ -0.39
SYNE1-214ENST00000454018 NUTM2DQ5VT03 806 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms