RNA–Protein interactions for RNA: ENST00000449190.5

RFX3-207, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-207ENST00000449190 NPHP4O75161 1426 aaPredicted RBP13.57□□□□□ -0.24
RFX3-207ENST00000449190 ABCB7O75027 752 aa13.57□□□□□ -0.24
RFX3-207ENST00000449190 TMEM2Q9UHN6 1383 aa13.57□□□□□ -0.24
RFX3-207ENST00000449190 RAB3GAP2Q9H2M9 1393 aa13.56□□□□□ -0.24
RFX3-207ENST00000449190 ARHGAP23Q9P227 1491 aa13.55□□□□□ -0.24
RFX3-207ENST00000449190 LTBP4Q8N2S1 1624 aa13.55□□□□□ -0.24
RFX3-207ENST00000449190 TET3O43151 1660 aa13.55□□□□□ -0.24
RFX3-207ENST00000449190 SLIT1O75093 1534 aa13.54□□□□□ -0.24
RFX3-207ENST00000449190 SLC4A1APQ9BWU0 796 aaKnown RBP13.54□□□□□ -0.24
RFX3-207ENST00000449190 ZNF219Q9P2Y4 722 aaPredicted RBP13.54□□□□□ -0.24
RFX3-207ENST00000449190 CHGAP10645 457 aaKnown RBP13.53□□□□□ -0.24
RFX3-207ENST00000449190 SCAF11Q99590 1463 aaKnown RBP13.53□□□□□ -0.24
RFX3-207ENST00000449190 SYNMO15061 1565 aa13.53□□□□□ -0.24
RFX3-207ENST00000449190 NEURL4Q96JN8 1562 aa13.53□□□□□ -0.24
RFX3-207ENST00000449190 IQGAP3Q86VI3 1631 aa13.53□□□□□ -0.24
RFX3-207ENST00000449190 GCC2Q8IWJ2 1684 aa13.53□□□□□ -0.24
RFX3-207ENST00000449190 UBR1Q8IWV7 1749 aa13.53□□□□□ -0.24
RFX3-207ENST00000449190 SLC4A2P04920 1241 aa13.52□□□□□ -0.25
RFX3-207ENST00000449190 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.52□□□□□ -0.25
RFX3-207ENST00000449190 PIK3C2BO00750 1634 aa13.51□□□□□ -0.25
RFX3-207ENST00000449190 IQSEC2Q5JU85 1478 aa13.51□□□□□ -0.25
RFX3-207ENST00000449190 MPHOSPH9Q99550 1183 aa13.5□□□□□ -0.25
RFX3-207ENST00000449190 KDM5AP29375 1690 aaKnown RBP13.49□□□□□ -0.25
RFX3-207ENST00000449190 POLR1AO95602 1720 aaPredicted RBP13.48□□□□□ -0.25
RFX3-207ENST00000449190 E9PCH4 1651 aa13.48□□□□□ -0.25
RFX3-207ENST00000449190 BCANQ96GW7 911 aa13.48□□□□□ -0.25
RFX3-207ENST00000449190 PPP1R15AO75807 674 aaPredicted RBP13.47□□□□□ -0.25
RFX3-207ENST00000449190 ADGRB3O60242 1522 aa13.47□□□□□ -0.25
RFX3-207ENST00000449190 RIMS2Q9UQ26 1411 aa13.47□□□□□ -0.25
RFX3-207ENST00000449190 CPS1P31327 1500 aa13.46□□□□□ -0.25
RFX3-207ENST00000449190 KCNA6P17658 529 aa13.46□□□□□ -0.25
RFX3-207ENST00000449190 SLC26A8Q96RN1 970 aa13.46□□□□□ -0.25
RFX3-207ENST00000449190 IQGAP1P46940 1657 aa13.45□□□□□ -0.26
RFX3-207ENST00000449190 UBAP1LF5GYI3 381 aa13.45□□□□□ -0.26
RFX3-207ENST00000449190 TBX22Q9Y458 520 aa13.45□□□□□ -0.26
RFX3-207ENST00000449190 ZFYVE9O95405 1425 aa13.45□□□□□ -0.26
RFX3-207ENST00000449190 PLEKHG1Q9ULL1 1385 aa13.45□□□□□ -0.26
RFX3-207ENST00000449190 TOM1O60784 492 aa13.44□□□□□ -0.26
RFX3-207ENST00000449190 TMEM131LA2VDJ0 1609 aa13.43□□□□□ -0.26
RFX3-207ENST00000449190 ZNF326Q5BKZ1 582 aaKnown RBP13.43□□□□□ -0.26
RFX3-207ENST00000449190 NUTM2DQ5VT03 806 aaPredicted RBP13.43□□□□□ -0.26
RFX3-207ENST00000449190 PROSER2Q86WR7 435 aaPredicted RBP13.4□□□□□ -0.26
RFX3-207ENST00000449190 RPGRIP1LQ68CZ1 1315 aa13.39□□□□□ -0.27
RFX3-207ENST00000449190 VGFO15240 615 aaPredicted RBP13.39□□□□□ -0.27
RFX3-207ENST00000449190 LRRC7Q96NW7 1537 aa13.39□□□□□ -0.27
RFX3-207ENST00000449190 TRPM2O94759 1503 aa13.38□□□□□ -0.27
RFX3-207ENST00000449190 SPHKAPQ2M3C7 1700 aa13.37□□□□□ -0.27
RFX3-207ENST00000449190 RBM42Q9BTD8 480 aaKnown RBP13.37□□□□□ -0.27
RFX3-207ENST00000449190 PIK3R4Q99570 1358 aa13.36□□□□□ -0.27
RFX3-207ENST00000449190 ADAMTS13Q76LX8 1427 aa13.36□□□□□ -0.27
RFX3-207ENST00000449190 PIP4K2BP78356 416 aa13.35□□□□□ -0.27
RFX3-207ENST00000449190 MYO5BQ9ULV0 1848 aa13.34□□□□□ -0.27
RFX3-207ENST00000449190 TMEM94Q12767 1356 aa13.34□□□□□ -0.27
RFX3-207ENST00000449190 AMOTL2Q9Y2J4 779 aa13.34□□□□□ -0.27
RFX3-207ENST00000449190 STRCP1A6NGW2 1772 aa13.33□□□□□ -0.28
RFX3-207ENST00000449190 CCDC144AA2RUR9 1427 aa13.33□□□□□ -0.28
RFX3-207ENST00000449190 CLTCL1P53675 1640 aa13.33□□□□□ -0.28
RFX3-207ENST00000449190 CCER1Q8TC90 406 aaPredicted RBP13.33□□□□□ -0.28
RFX3-207ENST00000449190 DHX57Q6P158 1386 aaKnown RBP13.32□□□□□ -0.28
RFX3-207ENST00000449190 RGL3Q3MIN7 710 aa13.32□□□□□ -0.28
RFX3-207ENST00000449190 CHRDL2Q6WN34 429 aa13.32□□□□□ -0.28
RFX3-207ENST00000449190 ANKRD30BQ9BXX2 1392 aa13.32□□□□□ -0.28
RFX3-207ENST00000449190 RBM33Q96EV2 1170 aaKnown RBP13.31□□□□□ -0.28
RFX3-207ENST00000449190 NCOA3Q9Y6Q9 1424 aa13.3□□□□□ -0.28
RFX3-207ENST00000449190 NKTRP30414 1462 aaKnown RBP13.29□□□□□ -0.28
RFX3-207ENST00000449190 KIF1BO60333 1816 aa13.29□□□□□ -0.28
RFX3-207ENST00000449190 NEXMIFQ5QGS0 1516 aa13.29□□□□□ -0.28
RFX3-207ENST00000449190 DIP2AQ14689 1571 aa13.28□□□□□ -0.28
RFX3-207ENST00000449190 HSPA1LP34931 641 aa13.28□□□□□ -0.28
RFX3-207ENST00000449190 NEUROD1Q13562 356 aa13.28□□□□□ -0.28
RFX3-207ENST00000449190 C19orf44Q9H6X5 657 aa13.28□□□□□ -0.28
RFX3-207ENST00000449190 METP08581 1390 aa13.28□□□□□ -0.28
RFX3-207ENST00000449190 SLAIN2Q9P270 581 aa13.27□□□□□ -0.29
RFX3-207ENST00000449190 MSH6P52701 1360 aa13.27□□□□□ -0.29
RFX3-207ENST00000449190 SPATA31E1Q6ZUB1 1445 aa13.27□□□□□ -0.29
RFX3-207ENST00000449190 PTPRUQ92729 1446 aa13.27□□□□□ -0.29
RFX3-207ENST00000449190 NWD1Q149M9 1564 aa13.27□□□□□ -0.29
RFX3-207ENST00000449190 SETBP1Q9Y6X0 1596 aa13.27□□□□□ -0.29
RFX3-207ENST00000449190 CHD2O14647 1828 aaKnown RBP13.27□□□□□ -0.29
RFX3-207ENST00000449190 SAMD1Q6SPF0 538 aaPredicted RBP13.26□□□□□ -0.29
RFX3-207ENST00000449190 C14orf37Q86TY3 774 aa13.26□□□□□ -0.29
RFX3-207ENST00000449190 ADGRF5Q8IZF2 1346 aa13.26□□□□□ -0.29
RFX3-207ENST00000449190 CLSPNQ9HAW4 1339 aa13.26□□□□□ -0.29
RFX3-207ENST00000449190 FAM135BQ49AJ0 1406 aa13.25□□□□□ -0.29
RFX3-207ENST00000449190 CADPS2Q86UW7 1296 aa13.25□□□□□ -0.29
RFX3-207ENST00000449190 ALKQ9UM73 1620 aa13.24□□□□□ -0.29
RFX3-207ENST00000449190 STAC3Q96MF2 364 aa13.24□□□□□ -0.29
RFX3-207ENST00000449190 SIN3AQ96ST3 1273 aa13.24□□□□□ -0.29
RFX3-207ENST00000449190 ATF3P18847 181 aa13.23□□□□□ -0.29
RFX3-207ENST00000449190 NRXN3Q9Y4C0 1643 aa13.22□□□□□ -0.29
RFX3-207ENST00000449190 XIRP1Q702N8 1843 aaKnown RBP13.22□□□□□ -0.29
RFX3-207ENST00000449190 C14orf93Q9H972 538 aaKnown RBP13.21□□□□□ -0.29
RFX3-207ENST00000449190 KCNA4P22459 653 aa13.19□□□□□ -0.3
RFX3-207ENST00000449190 DCAF11Q8TEB1 546 aa13.19□□□□□ -0.3
RFX3-207ENST00000449190 KDM2AQ9Y2K7 1162 aa13.19□□□□□ -0.3
RFX3-207ENST00000449190 PPLO60437 1756 aa13.18□□□□□ -0.3
RFX3-207ENST00000449190 SIRT1Q96EB6 747 aa13.18□□□□□ -0.3
RFX3-207ENST00000449190 TONSLQ96HA7 1378 aa13.18□□□□□ -0.3
RFX3-207ENST00000449190 CFAP70Q5T0N1 1121 aa13.17□□□□□ -0.3
RFX3-207ENST00000449190 TMEM132EQ6IEE7 984 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms