RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	MAP3K4	Q9Y6R4	1608 aa		22.62	■■□□□ 1.21
TOM1-210	ENST00000449058	MYOM2	P54296	1465 aa		22.62	■■□□□ 1.21
TOM1-210	ENST00000449058	IFT172	Q9UG01	1749 aa		22.62	■■□□□ 1.21
TOM1-210	ENST00000449058	CDCA8	Q53HL2	280 aa		22.62	■■□□□ 1.21
TOM1-210	ENST00000449058	RCAN3	Q9UKA8	241 aa		22.61	■■□□□ 1.21
TOM1-210	ENST00000449058	EIF3A	Q14152	1382 aa	Known RBP	22.59	■■□□□ 1.21
TOM1-210	ENST00000449058	ABCA6	Q8N139	1617 aa		22.59	■■□□□ 1.21
TOM1-210	ENST00000449058	PPRC1	Q5VV67	1664 aa	Known RBP	22.59	■■□□□ 1.21
TOM1-210	ENST00000449058	UGGT1	Q9NYU2	1555 aa		22.59	■■□□□ 1.21
TOM1-210	ENST00000449058	LMTK2	Q8IWU2	1503 aa		22.59	■■□□□ 1.21
TOM1-210	ENST00000449058	SALL2	Q9Y467	1007 aa	Predicted RBP	22.58	■■□□□ 1.21
TOM1-210	ENST00000449058	KDM5A	P29375	1690 aa	Known RBP	22.58	■■□□□ 1.2
TOM1-210	ENST00000449058	AMER1	Q5JTC6	1135 aa	Predicted RBP	22.57	■■□□□ 1.2
TOM1-210	ENST00000449058	KNSTRN	Q9Y448	316 aa		22.57	■■□□□ 1.2
TOM1-210	ENST00000449058	ASXL1	Q8IXJ9	1541 aa		22.57	■■□□□ 1.2
TOM1-210	ENST00000449058	ZNF518A	Q6AHZ1	1483 aa		22.56	■■□□□ 1.2
TOM1-210	ENST00000449058	MROH2A	A6NES4	1674 aa		22.55	■■□□□ 1.2
TOM1-210	ENST00000449058	CDCA7L	Q96GN5	454 aa		22.55	■■□□□ 1.2
TOM1-210	ENST00000449058	MYT1L	Q9UL68	1186 aa		22.55	■■□□□ 1.2
TOM1-210	ENST00000449058	NPC1L1	Q9UHC9	1359 aa		22.55	■■□□□ 1.2
TOM1-210	ENST00000449058	PPP2R1A	P30153	589 aa		22.54	■■□□□ 1.2
TOM1-210	ENST00000449058	OSCAR	Q8IYS5	282 aa		22.53	■■□□□ 1.2
TOM1-210	ENST00000449058	NRXN1	Q9ULB1	1477 aa		22.53	■■□□□ 1.2
TOM1-210	ENST00000449058	CFAP74	Q9C0B2	1584 aa		22.52	■■□□□ 1.2
TOM1-210	ENST00000449058	MYO3A	Q8NEV4	1616 aa		22.51	■■□□□ 1.19
TOM1-210	ENST00000449058	PIK3C2G	O75747	1445 aa		22.51	■■□□□ 1.19
TOM1-210	ENST00000449058	EXOC6	Q8TAG9	804 aa		22.5	■■□□□ 1.19
TOM1-210	ENST00000449058	ADAMTS8	Q9UP79	889 aa		22.5	■■□□□ 1.19
TOM1-210	ENST00000449058	ERVK-7	P63135	1459 aa		22.49	■■□□□ 1.19
TOM1-210	ENST00000449058	ADGRF5	Q8IZF2	1346 aa		22.49	■■□□□ 1.19
TOM1-210	ENST00000449058	ADGRB3	O60242	1522 aa		22.49	■■□□□ 1.19
TOM1-210	ENST00000449058	SLC24A1	O60721	1099 aa		22.49	■■□□□ 1.19
TOM1-210	ENST00000449058	CFAP70	Q5T0N1	1121 aa		22.49	■■□□□ 1.19
TOM1-210	ENST00000449058	POGZ	Q7Z3K3	1410 aa		22.47	■■□□□ 1.19
TOM1-210	ENST00000449058	FRMPD1	Q5SYB0	1578 aa		22.46	■■□□□ 1.19
TOM1-210	ENST00000449058	MLH3	Q9UHC1	1453 aa		22.46	■■□□□ 1.19
TOM1-210	ENST00000449058	SETBP1	Q9Y6X0	1596 aa		22.46	■■□□□ 1.19
TOM1-210	ENST00000449058	SBNO2	Q9Y2G9	1366 aa		22.44	■■□□□ 1.18
TOM1-210	ENST00000449058	PPL	O60437	1756 aa		22.44	■■□□□ 1.18
TOM1-210	ENST00000449058	WDR43	Q15061	677 aa	Known RBP eCLIP	22.43	■■□□□ 1.18
TOM1-210	ENST00000449058	HECW2	Q9P2P5	1572 aa		22.43	■■□□□ 1.18
TOM1-210	ENST00000449058	CD109	Q6YHK3	1445 aa		22.42	■■□□□ 1.18
TOM1-210	ENST00000449058	PLEKHH1	Q9ULM0	1364 aa		22.42	■■□□□ 1.18
TOM1-210	ENST00000449058	ZNF521	Q96K83	1311 aa		22.41	■■□□□ 1.18
TOM1-210	ENST00000449058	NPM1	P06748	294 aa	Known RBP eCLIP	22.41	■■□□□ 1.18
TOM1-210	ENST00000449058	NPAT	Q14207	1427 aa		22.41	■■□□□ 1.18
TOM1-210	ENST00000449058	NOS1	P29475	1434 aa		22.4	■■□□□ 1.18
TOM1-210	ENST00000449058	ERICH6	Q7L0X2	663 aa		22.4	■■□□□ 1.18
TOM1-210	ENST00000449058	ZC3H13	Q5T200	1668 aa	Known RBP	22.39	■■□□□ 1.17
TOM1-210	ENST00000449058	CFAP65	Q6ZU64	1925 aa	Known RBP	22.36	■■□□□ 1.17
TOM1-210	ENST00000449058	ABCC3	O15438	1527 aa		22.36	■■□□□ 1.17
TOM1-210	ENST00000449058	PLIN1	O60240	522 aa		22.35	■■□□□ 1.17
TOM1-210	ENST00000449058	DUSP27	Q5VZP5	1158 aa		22.35	■■□□□ 1.17
TOM1-210	ENST00000449058	CARD14	Q9BXL6	1004 aa		22.35	■■□□□ 1.17
TOM1-210	ENST00000449058	ADGRB1	O14514	1584 aa		22.35	■■□□□ 1.17
TOM1-210	ENST00000449058	QRICH2	Q9H0J4	1663 aa		22.34	■■□□□ 1.17
TOM1-210	ENST00000449058	CAMSAP1	Q5T5Y3	1602 aa		22.33	■■□□□ 1.17
TOM1-210	ENST00000449058	TCERG1	O14776	1098 aa	Known RBP	22.33	■■□□□ 1.17
TOM1-210	ENST00000449058	CENPJ	Q9HC77	1338 aa	Predicted RBP	22.32	■■□□□ 1.16
TOM1-210	ENST00000449058	GOLGA2	Q08379	1002 aa		22.32	■■□□□ 1.16
TOM1-210	ENST00000449058	CRBN	Q96SW2	442 aa		22.32	■■□□□ 1.16
TOM1-210	ENST00000449058	C14orf93	Q9H972	538 aa	Known RBP	22.32	■■□□□ 1.16
TOM1-210	ENST00000449058	SIGLEC1	Q9BZZ2	1709 aa		22.31	■■□□□ 1.16
TOM1-210	ENST00000449058	PIK3C2B	O00750	1634 aa		22.3	■■□□□ 1.16
TOM1-210	ENST00000449058	NEO1	Q92859	1461 aa		22.3	■■□□□ 1.16
TOM1-210	ENST00000449058	RPGRIP1L	Q68CZ1	1315 aa		22.3	■■□□□ 1.16
TOM1-210	ENST00000449058	GGT6	Q6P531	493 aa		22.3	■■□□□ 1.16
TOM1-210	ENST00000449058	CHGA	P10645	457 aa	Known RBP	22.28	■■□□□ 1.16
TOM1-210	ENST00000449058	TRMT2A	Q8IZ69	625 aa	Known RBP	22.28	■■□□□ 1.16
TOM1-210	ENST00000449058	NOP58	Q9Y2X3	529 aa	Known RBP	22.28	■■□□□ 1.16
TOM1-210	ENST00000449058	SLFN5	Q08AF3	891 aa		22.28	■■□□□ 1.16
TOM1-210	ENST00000449058	MS4A1	P11836	297 aa		22.27	■■□□□ 1.16
TOM1-210	ENST00000449058	ANP32A	P39687	249 aa	Known RBP	22.27	■■□□□ 1.16
TOM1-210	ENST00000449058	DIP2C	Q9Y2E4	1556 aa		22.26	■■□□□ 1.15
TOM1-210	ENST00000449058	USP32	Q8NFA0	1604 aa		22.25	■■□□□ 1.15
TOM1-210	ENST00000449058	C20orf194	Q5TEA3	1177 aa		22.25	■■□□□ 1.15
TOM1-210	ENST00000449058	POLR3A	O14802	1390 aa	Predicted RBP	22.25	■■□□□ 1.15
TOM1-210	ENST00000449058	CCDC146	Q8IYE0	955 aa		22.25	■■□□□ 1.15
TOM1-210	ENST00000449058	IPO9	Q96P70	1041 aa	Known RBP	22.25	■■□□□ 1.15
TOM1-210	ENST00000449058	TRAK1	Q9UPV9	953 aa		22.24	■■□□□ 1.15
TOM1-210	ENST00000449058	NGEF	Q8N5V2	710 aa		22.23	■■□□□ 1.15
TOM1-210	ENST00000449058	GLI2	P10070	1586 aa		22.23	■■□□□ 1.15
TOM1-210	ENST00000449058	SHPRH	Q149N8	1683 aa		22.23	■■□□□ 1.15
TOM1-210	ENST00000449058	APAF1	O14727	1248 aa		22.23	■■□□□ 1.15
TOM1-210	ENST00000449058	NEXMIF	Q5QGS0	1516 aa		22.22	■■□□□ 1.15
TOM1-210	ENST00000449058	RICTOR	Q6R327	1708 aa		22.22	■■□□□ 1.15
TOM1-210	ENST00000449058	NSD3	Q9BZ95	1437 aa		22.22	■■□□□ 1.15
TOM1-210	ENST00000449058	ARHGEF28	Q8N1W1	1705 aa	Known RBP	22.21	■■□□□ 1.15
TOM1-210	ENST00000449058	PAK3	O75914	559 aa	Predicted RBP	22.21	■■□□□ 1.15
TOM1-210	ENST00000449058	ARHGAP31	Q2M1Z3	1444 aa		22.21	■■□□□ 1.15
TOM1-210	ENST00000449058	NKTR	P30414	1462 aa	Known RBP	22.2	■■□□□ 1.15
TOM1-210	ENST00000449058	PDE4A	P27815	886 aa		22.2	■■□□□ 1.15
TOM1-210	ENST00000449058	BACH2	Q9BYV9	841 aa		22.19	■■□□□ 1.14
TOM1-210	ENST00000449058	RAPGEF3	O95398	923 aa		22.19	■■□□□ 1.14
TOM1-210	ENST00000449058	TMEM132E	Q6IEE7	984 aa		22.19	■■□□□ 1.14
TOM1-210	ENST00000449058	KDM2B	Q8NHM5	1336 aa		22.19	■■□□□ 1.14
TOM1-210	ENST00000449058	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	22.18	■■□□□ 1.14
TOM1-210	ENST00000449058	SPINK5	Q9NQ38	1064 aa	Predicted RBP	22.18	■■□□□ 1.14
TOM1-210	ENST00000449058	PUS7	Q96PZ0	661 aa	Known RBP	22.17	■■□□□ 1.14
TOM1-210	ENST00000449058	SLC12A5	Q9H2X9	1139 aa		22.17	■■□□□ 1.14

Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms