RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 TMEM94Q12767 1356 aa22.05■■□□□ 1.12
USP39-206ENST00000448971 NOS1P29475 1434 aa22.05■■□□□ 1.12
USP39-206ENST00000448971 SLC26A8Q96RN1 970 aa22.04■■□□□ 1.12
USP39-206ENST00000448971 GCC2Q8IWJ2 1684 aa22.04■■□□□ 1.12
USP39-206ENST00000448971 PROSER2Q86WR7 435 aaPredicted RBP22.01■■□□□ 1.11
USP39-206ENST00000448971 RBM33Q96EV2 1170 aaKnown RBP22.01■■□□□ 1.11
USP39-206ENST00000448971 SLC52A1Q9NWF4 448 aa22.01■■□□□ 1.11
USP39-206ENST00000448971 IQGAP3Q86VI3 1631 aa21.97■■□□□ 1.11
USP39-206ENST00000448971 NAIPQ13075 1403 aa21.97■■□□□ 1.11
USP39-206ENST00000448971 HFM1A2PYH4 1435 aa21.96■■□□□ 1.11
USP39-206ENST00000448971 ADGRB3O60242 1522 aa21.95■■□□□ 1.1
USP39-206ENST00000448971 POTEAQ6S8J7 498 aa21.94■■□□□ 1.1
USP39-206ENST00000448971 ROBO1Q9Y6N7 1651 aa21.93■■□□□ 1.1
USP39-206ENST00000448971 RPRD2Q5VT52 1461 aaKnown RBP21.92■■□□□ 1.1
USP39-206ENST00000448971 NUP155O75694 1391 aa21.92■■□□□ 1.1
USP39-206ENST00000448971 NWD1Q149M9 1564 aa21.91■■□□□ 1.1
USP39-206ENST00000448971 NKTRP30414 1462 aaKnown RBP21.91■■□□□ 1.1
USP39-206ENST00000448971 ZFYVE9O95405 1425 aa21.91■■□□□ 1.1
USP39-206ENST00000448971 SLAIN2Q9P270 581 aa21.91■■□□□ 1.1
USP39-206ENST00000448971 BCANQ96GW7 911 aa21.9■■□□□ 1.1
USP39-206ENST00000448971 PLEKHG1Q9ULL1 1385 aa21.88■■□□□ 1.09
USP39-206ENST00000448971 E9PCH4 1651 aa21.88■■□□□ 1.09
USP39-206ENST00000448971 MSH6P52701 1360 aa21.87■■□□□ 1.09
USP39-206ENST00000448971 MYO5BQ9ULV0 1848 aa21.87■■□□□ 1.09
USP39-206ENST00000448971 CHD2O14647 1828 aaKnown RBP21.87■■□□□ 1.09
USP39-206ENST00000448971 HDGFP51858 240 aaKnown RBP21.86■■□□□ 1.09
USP39-206ENST00000448971 TBX22Q9Y458 520 aa21.86■■□□□ 1.09
USP39-206ENST00000448971 RIMS2Q9UQ26 1411 aa21.86■■□□□ 1.09
USP39-206ENST00000448971 TMEM131LA2VDJ0 1609 aa21.84■■□□□ 1.09
USP39-206ENST00000448971 PPP1R15AO75807 674 aaPredicted RBP21.81■■□□□ 1.08
USP39-206ENST00000448971 NCOA3Q9Y6Q9 1424 aa21.8■■□□□ 1.08
USP39-206ENST00000448971 JCADQ9P266 1359 aa21.8■■□□□ 1.08
USP39-206ENST00000448971 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.8■■□□□ 1.08
USP39-206ENST00000448971 TRIM52Q96A61 297 aa21.8■■□□□ 1.08
USP39-206ENST00000448971 PHLPP1O60346 1717 aa21.79■■□□□ 1.08
USP39-206ENST00000448971 ADAMTS13Q76LX8 1427 aa21.79■■□□□ 1.08
USP39-206ENST00000448971 CHGAP10645 457 aaKnown RBP21.77■■□□□ 1.08
USP39-206ENST00000448971 NUTM2DQ5VT03 806 aaPredicted RBP21.77■■□□□ 1.08
USP39-206ENST00000448971 SPHKAPQ2M3C7 1700 aa21.76■■□□□ 1.07
USP39-206ENST00000448971 C19orf44Q9H6X5 657 aa21.75■■□□□ 1.07
USP39-206ENST00000448971 PIK3R4Q99570 1358 aa21.74■■□□□ 1.07
USP39-206ENST00000448971 COL16A1Q07092 1604 aaPredicted RBP21.73■■□□□ 1.07
USP39-206ENST00000448971 SETD5Q9C0A6 1442 aa21.72■■□□□ 1.07
USP39-206ENST00000448971 CADPS2Q86UW7 1296 aa21.72■■□□□ 1.07
USP39-206ENST00000448971 KCNA4P22459 653 aa21.71■■□□□ 1.07
USP39-206ENST00000448971 C14orf37Q86TY3 774 aa21.71■■□□□ 1.07
USP39-206ENST00000448971 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.7■■□□□ 1.06
USP39-206ENST00000448971 SLC4A1APQ9BWU0 796 aaKnown RBP21.7■■□□□ 1.06
USP39-206ENST00000448971 AMOTL2Q9Y2J4 779 aa21.7■■□□□ 1.06
USP39-206ENST00000448971 SPATA31A6Q5VVP1 1343 aa21.7■■□□□ 1.06
USP39-206ENST00000448971 TRPM2O94759 1503 aa21.7■■□□□ 1.06
USP39-206ENST00000448971 ATF3P18847 181 aa21.69■■□□□ 1.06
USP39-206ENST00000448971 PTPRUQ92729 1446 aa21.69■■□□□ 1.06
USP39-206ENST00000448971 DIP2AQ14689 1571 aa21.69■■□□□ 1.06
USP39-206ENST00000448971 LRP6O75581 1613 aa21.68■■□□□ 1.06
USP39-206ENST00000448971 RAB3GAP2Q9H2M9 1393 aa21.67■■□□□ 1.06
USP39-206ENST00000448971 CLTCL1P53675 1640 aa21.66■■□□□ 1.06
USP39-206ENST00000448971 AHDC1Q5TGY3 1603 aaPredicted RBP21.66■■□□□ 1.06
USP39-206ENST00000448971 BRINP3Q76B58 766 aa21.65■■□□□ 1.06
USP39-206ENST00000448971 SETD1AO15047 1707 aaKnown RBP21.64■■□□□ 1.06
USP39-206ENST00000448971 ZNF772Q68DY9 489 aaPredicted RBP21.63■■□□□ 1.05
USP39-206ENST00000448971 ACIN1Q9UKV3 1341 aaKnown RBP21.62■■□□□ 1.05
USP39-206ENST00000448971 SHPRHQ149N8 1683 aa21.6■■□□□ 1.05
USP39-206ENST00000448971 MEX3CQ5U5Q3 659 aaKnown RBP21.6■■□□□ 1.05
USP39-206ENST00000448971 PPP4R3CPQ6ZMV5 832 aa21.59■■□□□ 1.05
USP39-206ENST00000448971 NRXN3Q9Y4C0 1643 aa21.58■■□□□ 1.05
USP39-206ENST00000448971 DCCP43146 1447 aa21.58■■□□□ 1.05
USP39-206ENST00000448971 UPF1Q92900 1129 aaKnown RBP eCLIP21.58■■□□□ 1.05
USP39-206ENST00000448971 MPHOSPH9Q99550 1183 aa21.58■■□□□ 1.05
USP39-206ENST00000448971 METP08581 1390 aa21.57■■□□□ 1.04
USP39-206ENST00000448971 KIF1BO60333 1816 aa21.56■■□□□ 1.04
USP39-206ENST00000448971 SETBP1Q9Y6X0 1596 aa21.56■■□□□ 1.04
USP39-206ENST00000448971 XRN1Q8IZH2 1706 aaKnown RBP21.55■■□□□ 1.04
USP39-206ENST00000448971 MST1RQ04912 1400 aa21.55■■□□□ 1.04
USP39-206ENST00000448971 NUTM2BA6NNL0 878 aaPredicted RBP21.54■■□□□ 1.04
USP39-206ENST00000448971 NUTM2EB1AL46 878 aaPredicted RBP21.54■■□□□ 1.04
USP39-206ENST00000448971 RXRBP28702 533 aa21.54■■□□□ 1.04
USP39-206ENST00000448971 ZNF326Q5BKZ1 582 aaKnown RBP21.54■■□□□ 1.04
USP39-206ENST00000448971 NUTM2AQ8IVF1 878 aaPredicted RBP21.54■■□□□ 1.04
USP39-206ENST00000448971 CCDC144AA2RUR9 1427 aa21.54■■□□□ 1.04
USP39-206ENST00000448971 ASXL1Q8IXJ9 1541 aa21.53■■□□□ 1.04
USP39-206ENST00000448971 LRRC59Q96AG4 307 aaKnown RBP21.51■■□□□ 1.03
USP39-206ENST00000448971 DDX17Q92841 729 aaKnown RBP21.49■■□□□ 1.03
USP39-206ENST00000448971 AFF2P51816 1311 aa21.49■■□□□ 1.03
USP39-206ENST00000448971 NEXMIFQ5QGS0 1516 aa21.49■■□□□ 1.03
USP39-206ENST00000448971 NHSL1Q5SYE7 1610 aa21.48■■□□□ 1.03
USP39-206ENST00000448971 ADGRL3Q9HAR2 1447 aa21.46■■□□□ 1.03
USP39-206ENST00000448971 CDK12Q9NYV4 1490 aaPredicted RBP21.46■■□□□ 1.03
USP39-206ENST00000448971 HRCP23327 699 aa21.44■■□□□ 1.02
USP39-206ENST00000448971 PNPLA6Q8IY17 1366 aa21.44■■□□□ 1.02
USP39-206ENST00000448971 QTRT2Q9H974 415 aaKnown RBP21.42■■□□□ 1.02
USP39-206ENST00000448971 C8orf37Q96NL8 207 aa21.41■■□□□ 1.02
USP39-206ENST00000448971 NALCNQ8IZF0 1738 aa21.41■■□□□ 1.02
USP39-206ENST00000448971 C1orf167Q5SNV9 1468 aa21.4■■□□□ 1.02
USP39-206ENST00000448971 PPLO60437 1756 aa21.4■■□□□ 1.02
USP39-206ENST00000448971 MSH5O43196 834 aa21.39■■□□□ 1.01
USP39-206ENST00000448971 RBM6P78332 1123 aaKnown RBP21.39■■□□□ 1.01
USP39-206ENST00000448971 SPATA31E1Q6ZUB1 1445 aa21.38■■□□□ 1.01
USP39-206ENST00000448971 VGFO15240 615 aaPredicted RBP21.38■■□□□ 1.01
USP39-206ENST00000448971 ORAI2Q96SN7 254 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms