RNA–Protein interactions for RNA: ENST00000444061.7

SMARCA4-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 4,938 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-204ENST00000444061 ZNF330Q9Y3S2 320 aaPredicted RBP18.2■□□□□ 0.5
SMARCA4-204ENST00000444061 SAMD9Q5K651 1589 aa18.2■□□□□ 0.5
SMARCA4-204ENST00000444061 ABTB2Q8N961 1025 aa18.2■□□□□ 0.5
SMARCA4-204ENST00000444061 CHMP4BQ9H444 224 aaKnown RBP18.2■□□□□ 0.5
SMARCA4-204ENST00000444061 GGNBP2Q9H3C7 697 aa18.19■□□□□ 0.5
SMARCA4-204ENST00000444061 UPF2Q9HAU5 1272 aaKnown RBP18.19■□□□□ 0.5
SMARCA4-204ENST00000444061 UHRF1BP1LA0JNW5 1464 aa18.19■□□□□ 0.5
SMARCA4-204ENST00000444061 RTEL1-TNFRSF6BF6WH68 1400 aa18.18■□□□□ 0.5
SMARCA4-204ENST00000444061 KIF7Q2M1P5 1343 aa18.18■□□□□ 0.5
SMARCA4-204ENST00000444061 CCDC146Q8IYE0 955 aa18.17■□□□□ 0.5
SMARCA4-204ENST00000444061 PIP4K2BP78356 416 aa18.17■□□□□ 0.5
SMARCA4-204ENST00000444061 C1orf141Q5JVX7 400 aa18.17■□□□□ 0.5
SMARCA4-204ENST00000444061 DIAPH1O60610 1272 aaKnown RBP18.16■□□□□ 0.5
SMARCA4-204ENST00000444061 AMOTL2Q9Y2J4 779 aa18.16■□□□□ 0.5
SMARCA4-204ENST00000444061 CCDC7Q96M83 1385 aa18.16■□□□□ 0.5
SMARCA4-204ENST00000444061 ZNF692Q9BU19 519 aaPredicted RBP18.15■□□□□ 0.5
SMARCA4-204ENST00000444061 CABP1Q9NZU7 370 aa18.15■□□□□ 0.5
SMARCA4-204ENST00000444061 NEO1Q92859 1461 aa18.14■□□□□ 0.49
SMARCA4-204ENST00000444061 SUPT16HQ9Y5B9 1047 aaKnown RBP18.14■□□□□ 0.49
SMARCA4-204ENST00000444061 PRKRIP1Q9H875 184 aaPredicted RBP18.14■□□□□ 0.49
SMARCA4-204ENST00000444061 SLC12A5Q9H2X9 1139 aa18.13■□□□□ 0.49
SMARCA4-204ENST00000444061 ADGRF5Q8IZF2 1346 aa18.13■□□□□ 0.49
SMARCA4-204ENST00000444061 NLRP2Q9NX02 1062 aa18.13■□□□□ 0.49
SMARCA4-204ENST00000444061 PTPRKQ15262 1439 aa18.12■□□□□ 0.49
SMARCA4-204ENST00000444061 ATP10AO60312 1499 aa18.12■□□□□ 0.49
SMARCA4-204ENST00000444061 WAPLQ7Z5K2 1190 aa18.12■□□□□ 0.49
SMARCA4-204ENST00000444061 STK31Q9BXU1 1019 aa18.12■□□□□ 0.49
SMARCA4-204ENST00000444061 RAPGEF4Q8WZA2 1011 aa18.11■□□□□ 0.49
SMARCA4-204ENST00000444061 FAM135AQ9P2D6 1515 aa18.11■□□□□ 0.49
SMARCA4-204ENST00000444061 TCOF1Q13428 1488 aaKnown RBP18.11■□□□□ 0.49
SMARCA4-204ENST00000444061 TEFQ10587 303 aa18.1■□□□□ 0.49
SMARCA4-204ENST00000444061 CCDC61Q9Y6R9 512 aa18.1■□□□□ 0.49
SMARCA4-204ENST00000444061 ZMYM3Q14202 1370 aa18.1■□□□□ 0.49
SMARCA4-204ENST00000444061 ABCA8O94911 1581 aa18.1■□□□□ 0.49
SMARCA4-204ENST00000444061 OS9Q13438 667 aaPredicted RBP18.1■□□□□ 0.49
SMARCA4-204ENST00000444061 CFAP43Q8NDM7 1665 aa18.09■□□□□ 0.49
SMARCA4-204ENST00000444061 IPO8O15397 1037 aaKnown RBP18.09■□□□□ 0.49
SMARCA4-204ENST00000444061 NOS1P29475 1434 aa18.09■□□□□ 0.49
SMARCA4-204ENST00000444061 ATAD2Q6PL18 1390 aa18.09■□□□□ 0.49
SMARCA4-204ENST00000444061 GOLGA2Q08379 1002 aa18.08■□□□□ 0.49
SMARCA4-204ENST00000444061 RRP7AQ9Y3A4 280 aaKnown RBP18.08■□□□□ 0.48
SMARCA4-204ENST00000444061 NUDT16Q96DE0 195 aaKnown RBP18.08■□□□□ 0.48
SMARCA4-204ENST00000444061 NUTM2BA6NNL0 878 aaPredicted RBP18.08■□□□□ 0.48
SMARCA4-204ENST00000444061 NUTM2EB1AL46 878 aaPredicted RBP18.08■□□□□ 0.48
SMARCA4-204ENST00000444061 NUTM2AQ8IVF1 878 aaPredicted RBP18.08■□□□□ 0.48
SMARCA4-204ENST00000444061 ANP32AP39687 249 aaKnown RBP18.07■□□□□ 0.48
SMARCA4-204ENST00000444061 SHANK2Q9UPX8 1470 aa18.07■□□□□ 0.48
SMARCA4-204ENST00000444061 CNTLNQ9NXG0 1405 aa18.07■□□□□ 0.48
SMARCA4-204ENST00000444061 HSPA2P54652 639 aa18.06■□□□□ 0.48
SMARCA4-204ENST00000444061 RBM33Q96EV2 1170 aaKnown RBP18.06■□□□□ 0.48
SMARCA4-204ENST00000444061 XPCQ01831 940 aaPredicted RBP18.05■□□□□ 0.48
SMARCA4-204ENST00000444061 SYTL4Q96C24 671 aaPredicted RBP18.04■□□□□ 0.48
SMARCA4-204ENST00000444061 HSP90AA1P07900 732 aaKnown RBP18.04■□□□□ 0.48
SMARCA4-204ENST00000444061 USP35Q9P2H5 1018 aa18.04■□□□□ 0.48
SMARCA4-204ENST00000444061 C14orf93Q9H972 538 aaKnown RBP18.03■□□□□ 0.48
SMARCA4-204ENST00000444061 ATP7AQ04656 1500 aa18.03■□□□□ 0.48
SMARCA4-204ENST00000444061 WASHC2AQ641Q2 1341 aa18.03■□□□□ 0.48
SMARCA4-204ENST00000444061 ERCC6L2Q5T890 1561 aa18.03■□□□□ 0.48
SMARCA4-204ENST00000444061 STRN4Q9NRL3 753 aa18.03■□□□□ 0.48
SMARCA4-204ENST00000444061 TTC5Q8N0Z6 440 aa18.02■□□□□ 0.48
SMARCA4-204ENST00000444061 PRDM11Q9NQV5 511 aa18.02■□□□□ 0.48
SMARCA4-204ENST00000444061 MTHFSP49914 203 aa18.01■□□□□ 0.47
SMARCA4-204ENST00000444061 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.01■□□□□ 0.475e-7■■□□□ 13
SMARCA4-204ENST00000444061 PHF23Q9BUL5 403 aaPredicted RBP18■□□□□ 0.47
SMARCA4-204ENST00000444061 CADPS2Q86UW7 1296 aa18■□□□□ 0.47
SMARCA4-204ENST00000444061 HMOX1P09601 288 aa18■□□□□ 0.47
SMARCA4-204ENST00000444061 SMC4Q9NTJ3 1288 aa18■□□□□ 0.47
SMARCA4-204ENST00000444061 PHF8Q9UPP1 1060 aa18■□□□□ 0.47
SMARCA4-204ENST00000444061 RIMS2Q9UQ26 1411 aa17.99■□□□□ 0.47
SMARCA4-204ENST00000444061 PDE3BQ13370 1112 aa17.98■□□□□ 0.47
SMARCA4-204ENST00000444061 APAF1O14727 1248 aa17.98■□□□□ 0.47
SMARCA4-204ENST00000444061 FOXO3O43524 673 aa17.98■□□□□ 0.47
SMARCA4-204ENST00000444061 WASLO00401 505 aaPredicted RBP17.98■□□□□ 0.47
SMARCA4-204ENST00000444061 RPRD2Q5VT52 1461 aaKnown RBP17.98■□□□□ 0.47
SMARCA4-204ENST00000444061 ZFYVE16Q7Z3T8 1539 aa17.98■□□□□ 0.47
SMARCA4-204ENST00000444061 RCAN3Q9UKA8 241 aa17.97■□□□□ 0.47
SMARCA4-204ENST00000444061 MAPKBP1O60336 1514 aa17.96■□□□□ 0.47
SMARCA4-204ENST00000444061 RIPK4P57078 832 aa17.96■□□□□ 0.47
SMARCA4-204ENST00000444061 GTF2E1P29083 439 aaPredicted RBP17.95■□□□□ 0.46
SMARCA4-204ENST00000444061 ELL2O00472 640 aaPredicted RBP17.95■□□□□ 0.46
SMARCA4-204ENST00000444061 TOM1L2Q6ZVM7 507 aa17.95■□□□□ 0.46
SMARCA4-204ENST00000444061 HDAC5Q9UQL6 1122 aa17.95■□□□□ 0.46
SMARCA4-204ENST00000444061 UHRF1BP1Q6BDS2 1440 aa17.95■□□□□ 0.46
SMARCA4-204ENST00000444061 NCKAP5LQ9HCH0 1330 aa17.94■□□□□ 0.46
SMARCA4-204ENST00000444061 TMX4Q9H1E5 349 aaPredicted RBP17.94■□□□□ 0.46
SMARCA4-204ENST00000444061 YEATS2Q9ULM3 1422 aa17.94■□□□□ 0.46
SMARCA4-204ENST00000444061 CFAP74Q9C0B2 1584 aa17.94■□□□□ 0.46
SMARCA4-204ENST00000444061 SMG6Q86US8 1419 aaKnown RBP17.94■□□□□ 0.46
SMARCA4-204ENST00000444061 RUNDC1Q96C34 613 aa17.94■□□□□ 0.46
SMARCA4-204ENST00000444061 MSH6P52701 1360 aa17.93■□□□□ 0.46
SMARCA4-204ENST00000444061 ZC3H6P61129 1189 aaKnown RBP17.93■□□□□ 0.46
SMARCA4-204ENST00000444061 MAGI3Q5TCQ9 1506 aa17.93■□□□□ 0.46
SMARCA4-204ENST00000444061 DNMT1P26358 1616 aaKnown RBP17.93■□□□□ 0.46
SMARCA4-204ENST00000444061 MSH5O43196 834 aa17.93■□□□□ 0.46
SMARCA4-204ENST00000444061 TOM1O60784 492 aa17.93■□□□□ 0.46
SMARCA4-204ENST00000444061 NGEFQ8N5V2 710 aa17.93■□□□□ 0.46
SMARCA4-204ENST00000444061 ZCCHC11Q5TAX3 1644 aaKnown RBP17.93■□□□□ 0.46
SMARCA4-204ENST00000444061 SLC4A10Q6U841 1118 aa17.93■□□□□ 0.46
SMARCA4-204ENST00000444061 ITPRIPQ8IWB1 547 aa17.92■□□□□ 0.46
SMARCA4-204ENST00000444061 KCNH5Q8NCM2 988 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms