RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 EID1Q9Y6B2 187 aa3.64□□□□□ -1.83
LIG4-203ENST00000442234 CFTRP13569 1480 aa3.63□□□□□ -1.83
LIG4-203ENST00000442234 ANKLE2Q86XL3 938 aa3.63□□□□□ -1.83
LIG4-203ENST00000442234 MAP3K4Q9Y6R4 1608 aa3.63□□□□□ -1.83
LIG4-203ENST00000442234 CALD1Q05682 793 aaKnown RBP3.63□□□□□ -1.83
LIG4-203ENST00000442234 RSPH4AQ5TD94 716 aa3.63□□□□□ -1.83
LIG4-203ENST00000442234 IFNL1Q8IU54 200 aa3.63□□□□□ -1.83
LIG4-203ENST00000442234 FRAT1Q92837 279 aaPredicted RBP3.63□□□□□ -1.83
LIG4-203ENST00000442234 TSPYL2Q9H2G4 693 aaPredicted RBP3.63□□□□□ -1.83
LIG4-203ENST00000442234 STRN4Q9NRL3 753 aa3.63□□□□□ -1.83
LIG4-203ENST00000442234 BMP2KQ9NSY1 1161 aaPredicted RBP3.63□□□□□ -1.83
LIG4-203ENST00000442234 POTEAQ6S8J7 498 aa3.63□□□□□ -1.83
LIG4-203ENST00000442234 ZFP91Q96JP5 570 aaPredicted RBP3.63□□□□□ -1.83
LIG4-203ENST00000442234 SCAPERQ9BY12 1400 aa3.63□□□□□ -1.83
LIG4-203ENST00000442234 SPAG9O60271 1321 aaKnown RBP3.63□□□□□ -1.83
LIG4-203ENST00000442234 WASHC2AQ641Q2 1341 aa3.63□□□□□ -1.83
LIG4-203ENST00000442234 POTEIP0CG38 1075 aa3.62□□□□□ -1.83
LIG4-203ENST00000442234 ZHX1Q9UKY1 873 aaPredicted RBP3.62□□□□□ -1.83
LIG4-203ENST00000442234 PCDHB13Q9Y5F0 798 aa3.62□□□□□ -1.83
LIG4-203ENST00000442234 ECM2O94769 699 aaPredicted RBP3.62□□□□□ -1.83
LIG4-203ENST00000442234 HNRNPUQ00839 825 aaKnown RBP eCLIP3.62□□□□□ -1.83
LIG4-203ENST00000442234 GRM1Q13255 1194 aa3.62□□□□□ -1.83
LIG4-203ENST00000442234 DNTTIP2Q5QJE6 756 aaKnown RBP3.62□□□□□ -1.83
LIG4-203ENST00000442234 ZNF644Q9H582 1327 aaPredicted RBP3.62□□□□□ -1.83
LIG4-203ENST00000442234 ANP32CO43423 234 aa3.62□□□□□ -1.83
LIG4-203ENST00000442234 PSEN1P49768 467 aa3.62□□□□□ -1.83
LIG4-203ENST00000442234 APPP05067 770 aa3.61□□□□□ -1.83
LIG4-203ENST00000442234 FTSJ3Q8IY81 847 aaKnown RBP3.61□□□□□ -1.83
LIG4-203ENST00000442234 PDCL3Q9H2J4 239 aa3.61□□□□□ -1.83
LIG4-203ENST00000442234 TTLL13PA6NNM8 815 aa3.61□□□□□ -1.83
LIG4-203ENST00000442234 VGLL3A8MV65 326 aa3.61□□□□□ -1.83
LIG4-203ENST00000442234 GALR2O43603 387 aaPredicted RBP3.61□□□□□ -1.83
LIG4-203ENST00000442234 RXRBP28702 533 aa3.61□□□□□ -1.83
LIG4-203ENST00000442234 TNIKQ9UKE5 1360 aa3.61□□□□□ -1.83
LIG4-203ENST00000442234 L1TD1Q5T7N2 865 aaKnown RBP3.61□□□□□ -1.83
LIG4-203ENST00000442234 QTRT2Q9H974 415 aaKnown RBP3.61□□□□□ -1.83
LIG4-203ENST00000442234 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.61□□□□□ -1.839e-9■■■■■ 43.9
LIG4-203ENST00000442234 GTF2E1P29083 439 aaPredicted RBP3.61□□□□□ -1.83
LIG4-203ENST00000442234 IRX5P78411 483 aaPredicted RBP3.61□□□□□ -1.83
LIG4-203ENST00000442234 CABLES1Q8TDN4 633 aa3.61□□□□□ -1.83
LIG4-203ENST00000442234 SYTL4Q96C24 671 aaPredicted RBP3.61□□□□□ -1.83
LIG4-203ENST00000442234 TRIM44Q96DX7 344 aaPredicted RBP3.61□□□□□ -1.83
LIG4-203ENST00000442234 RYDENQ9NUL5 291 aaKnown RBP3.61□□□□□ -1.83
LIG4-203ENST00000442234 RNF25Q96BH1 459 aaPredicted RBP3.6□□□□□ -1.83
LIG4-203ENST00000442234 DDRGK1Q96HY6 314 aa3.6□□□□□ -1.83
LIG4-203ENST00000442234 KIF27Q86VH2 1401 aa3.6□□□□□ -1.83
LIG4-203ENST00000442234 PLB1Q6P1J6 1458 aa3.6□□□□□ -1.83
LIG4-203ENST00000442234 SYNJ1O43426 1573 aa3.6□□□□□ -1.83
LIG4-203ENST00000442234 PATL2C9JE40 543 aaKnown RBP3.6□□□□□ -1.83
LIG4-203ENST00000442234 YY1P25490 414 aa3.6□□□□□ -1.83
LIG4-203ENST00000442234 DDX10Q13206 875 aaKnown RBP3.6□□□□□ -1.83
LIG4-203ENST00000442234 R3HDM1Q15032 1099 aaKnown RBP3.6□□□□□ -1.83
LIG4-203ENST00000442234 FHOD3Q2V2M9 1422 aa3.6□□□□□ -1.83
LIG4-203ENST00000442234 COL17A1Q9UMD9 1497 aaPredicted RBP3.6□□□□□ -1.83
LIG4-203ENST00000442234 WWC1Q8IX03 1113 aa3.6□□□□□ -1.83
LIG4-203ENST00000442234 STAC3Q96MF2 364 aa3.6□□□□□ -1.83
LIG4-203ENST00000442234 CIZ1Q9ULV3 898 aaPredicted RBP3.6□□□□□ -1.83
LIG4-203ENST00000442234 HIRIP3Q9BW71 556 aaPredicted RBP3.59□□□□□ -1.83
LIG4-203ENST00000442234 TMEM121BQ9BXQ6 578 aaPredicted RBP3.59□□□□□ -1.83
LIG4-203ENST00000442234 NFKBIBQ15653 356 aa3.59□□□□□ -1.83
LIG4-203ENST00000442234 ESCO1Q5FWF5 840 aa3.59□□□□□ -1.83
LIG4-203ENST00000442234 FOXO3O43524 673 aa3.59□□□□□ -1.84
LIG4-203ENST00000442234 TPM2P07951 284 aa3.59□□□□□ -1.84
LIG4-203ENST00000442234 PYGBP11216 843 aa3.59□□□□□ -1.84
LIG4-203ENST00000442234 CNPY4Q8N129 248 aa3.59□□□□□ -1.84
LIG4-203ENST00000442234 SECISBP2LQ93073 1101 aaKnown RBP3.59□□□□□ -1.84
LIG4-203ENST00000442234 FAM13BQ9NYF5 915 aa3.59□□□□□ -1.84
LIG4-203ENST00000442234 GRIN2AQ12879 1464 aa3.59□□□□□ -1.84
LIG4-203ENST00000442234 HECW2Q9P2P5 1572 aa3.58□□□□□ -1.84
LIG4-203ENST00000442234 E9PSI1 815 aa3.58□□□□□ -1.84
LIG4-203ENST00000442234 CSB-PGBD3P0DP91 1061 aa3.58□□□□□ -1.84
LIG4-203ENST00000442234 HSP90B1P14625 803 aaKnown RBP3.58□□□□□ -1.84
LIG4-203ENST00000442234 IRX3P78415 501 aaPredicted RBP3.58□□□□□ -1.84
LIG4-203ENST00000442234 THEMISQ8N1K5 641 aaPredicted RBP3.58□□□□□ -1.84
LIG4-203ENST00000442234 RRAGDQ9NQL2 400 aaPredicted RBP3.58□□□□□ -1.84
LIG4-203ENST00000442234 PTMSP20962 102 aa3.58□□□□□ -1.84
LIG4-203ENST00000442234 MAMSTRQ6ZN01 415 aa3.58□□□□□ -1.84
LIG4-203ENST00000442234 PRDM10Q9NQV6 1147 aa3.58□□□□□ -1.84
LIG4-203ENST00000442234 BCCIPQ9P287 314 aaKnown RBP eCLIP3.58□□□□□ -1.84
LIG4-203ENST00000442234 ADAMTSL3P82987 1691 aa3.58□□□□□ -1.84
LIG4-203ENST00000442234 FHAD1B1AJZ9 1412 aa3.58□□□□□ -1.84
LIG4-203ENST00000442234 POGZQ7Z3K3 1410 aa3.58□□□□□ -1.84
LIG4-203ENST00000442234 ATN1P54259 1190 aaPredicted RBP3.58□□□□□ -1.84
LIG4-203ENST00000442234 EVA1CP58658 441 aa3.58□□□□□ -1.84
LIG4-203ENST00000442234 MAP7D2Q96T17 732 aa3.58□□□□□ -1.84
LIG4-203ENST00000442234 MTUS2Q5JR59 1369 aa3.58□□□□□ -1.84
LIG4-203ENST00000442234 GPR162Q16538 588 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 AEBP1Q8IUX7 1158 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 TEX2Q8IWB9 1127 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 PMFBP1Q8TBY8 1022 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 UACAQ9BZF9 1416 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 DIP2BQ9P265 1576 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 IGF1RP08069 1367 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 FER1L4A9Z1Z3 1794 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 RGL2O15211 777 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 FBXO22Q8NEZ5 403 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 DCBLD2Q96PD2 775 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 TMEM106CQ9BVX2 250 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 UHRF1BP1Q6BDS2 1440 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 LTV1Q96GA3 475 aaPredicted RBP3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms