RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 MYOM2P54296 1465 aa11.29□□□□□ -0.6
CCDC39-201ENST00000442201 SPATA31D1Q6ZQQ2 1576 aa11.28□□□□□ -0.6
CCDC39-201ENST00000442201 TRPM1Q7Z4N2 1603 aa11.27□□□□□ -0.6
CCDC39-201ENST00000442201 STAG3Q9UJ98 1225 aa11.27□□□□□ -0.6
CCDC39-201ENST00000442201 ADGRF5Q8IZF2 1346 aa11.27□□□□□ -0.6
CCDC39-201ENST00000442201 MADDQ8WXG6 1647 aa11.27□□□□□ -0.61
CCDC39-201ENST00000442201 MROH2AA6NES4 1674 aa11.27□□□□□ -0.61
CCDC39-201ENST00000442201 DDX10Q13206 875 aaKnown RBP11.27□□□□□ -0.61
CCDC39-201ENST00000442201 VGFO15240 615 aaPredicted RBP11.26□□□□□ -0.61
CCDC39-201ENST00000442201 TNRQ92752 1358 aa11.25□□□□□ -0.61
CCDC39-201ENST00000442201 ST20-MTHFSA0A0A6YYL1 179 aa11.24□□□□□ -0.61
CCDC39-201ENST00000442201 NRXN1Q9ULB1 1477 aa11.24□□□□□ -0.61
CCDC39-201ENST00000442201 WASHC2AQ641Q2 1341 aa11.24□□□□□ -0.61
CCDC39-201ENST00000442201 CFAP70Q5T0N1 1121 aa11.24□□□□□ -0.61
CCDC39-201ENST00000442201 LAMC1P11047 1609 aa11.23□□□□□ -0.61
CCDC39-201ENST00000442201 CCDC7Q96M83 1385 aa11.23□□□□□ -0.61
CCDC39-201ENST00000442201 TMEM131LA2VDJ0 1609 aa11.23□□□□□ -0.61
CCDC39-201ENST00000442201 IFT172Q9UG01 1749 aa11.23□□□□□ -0.61
CCDC39-201ENST00000442201 C11orf95C9JLR9 678 aaPredicted RBP11.22□□□□□ -0.61
CCDC39-201ENST00000442201 CEBPAP49715 358 aaPredicted RBP11.22□□□□□ -0.61
CCDC39-201ENST00000442201 PIK3C2GO75747 1445 aa11.22□□□□□ -0.61
CCDC39-201ENST00000442201 ZFYVE9O95405 1425 aa11.22□□□□□ -0.61
CCDC39-201ENST00000442201 NEXMIFQ5QGS0 1516 aa11.22□□□□□ -0.61
CCDC39-201ENST00000442201 NUTM2DQ5VT03 806 aaPredicted RBP11.22□□□□□ -0.61
CCDC39-201ENST00000442201 C14orf93Q9H972 538 aaKnown RBP11.21□□□□□ -0.61
CCDC39-201ENST00000442201 A2ML1A8K2U0 1454 aa11.21□□□□□ -0.61
CCDC39-201ENST00000442201 KIF7Q2M1P5 1343 aa11.21□□□□□ -0.62
CCDC39-201ENST00000442201 MIER1Q8N108 512 aa11.21□□□□□ -0.62
CCDC39-201ENST00000442201 PPLO60437 1756 aa11.21□□□□□ -0.62
CCDC39-201ENST00000442201 SCAF11Q99590 1463 aaKnown RBP11.2□□□□□ -0.62
CCDC39-201ENST00000442201 KIAA1210Q9ULL0 1709 aa11.2□□□□□ -0.62
CCDC39-201ENST00000442201 DAXXQ9UER7 740 aaPredicted RBP11.2□□□□□ -0.62
CCDC39-201ENST00000442201 PLPPR3Q6T4P5 718 aa11.19□□□□□ -0.62
CCDC39-201ENST00000442201 EIF3AQ14152 1382 aaKnown RBP11.19□□□□□ -0.62
CCDC39-201ENST00000442201 FER1L4A9Z1Z3 1794 aa11.19□□□□□ -0.62
CCDC39-201ENST00000442201 NLRP1Q9C000 1473 aa11.18□□□□□ -0.62
CCDC39-201ENST00000442201 RIMS2Q9UQ26 1411 aa11.18□□□□□ -0.62
CCDC39-201ENST00000442201 HDGFP51858 240 aaKnown RBP11.18□□□□□ -0.62
CCDC39-201ENST00000442201 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.18□□□□□ -0.62
CCDC39-201ENST00000442201 POLR3GLQ9BT43 218 aa11.18□□□□□ -0.62
CCDC39-201ENST00000442201 TESK2Q96S53 571 aa11.17□□□□□ -0.62
CCDC39-201ENST00000442201 SETBP1Q9Y6X0 1596 aa11.16□□□□□ -0.62
CCDC39-201ENST00000442201 C3P01024 1663 aa11.16□□□□□ -0.62
CCDC39-201ENST00000442201 TMF1P82094 1093 aa11.16□□□□□ -0.62
CCDC39-201ENST00000442201 TMEM132EQ6IEE7 984 aa11.15□□□□□ -0.62
CCDC39-201ENST00000442201 MYO5BQ9ULV0 1848 aa11.15□□□□□ -0.62
CCDC39-201ENST00000442201 IQGAP1P46940 1657 aa11.15□□□□□ -0.62
CCDC39-201ENST00000442201 TMEM2Q9UHN6 1383 aa11.14□□□□□ -0.63
CCDC39-201ENST00000442201 ANP32CO43423 234 aa11.14□□□□□ -0.63
CCDC39-201ENST00000442201 UBE2Q2Q8WVN8 375 aa11.14□□□□□ -0.63
CCDC39-201ENST00000442201 ADGRB1O14514 1584 aa11.14□□□□□ -0.63
CCDC39-201ENST00000442201 SENP3Q9H4L4 574 aaPredicted RBP11.14□□□□□ -0.63
CCDC39-201ENST00000442201 TRAK1Q9UPV9 953 aa11.14□□□□□ -0.63
CCDC39-201ENST00000442201 KDM5AP29375 1690 aaKnown RBP11.13□□□□□ -0.63
CCDC39-201ENST00000442201 ADAMTSL3P82987 1691 aa11.13□□□□□ -0.63
CCDC39-201ENST00000442201 CDCA8Q53HL2 280 aa11.12□□□□□ -0.63
CCDC39-201ENST00000442201 THEMISQ8N1K5 641 aaPredicted RBP11.12□□□□□ -0.63
CCDC39-201ENST00000442201 DISP3Q9P2K9 1392 aa11.12□□□□□ -0.63
CCDC39-201ENST00000442201 RIMS1Q86UR5 1692 aaKnown RBP11.12□□□□□ -0.63
CCDC39-201ENST00000442201 POLR1AO95602 1720 aaPredicted RBP11.12□□□□□ -0.63
CCDC39-201ENST00000442201 CENPJQ9HC77 1338 aaPredicted RBP11.12□□□□□ -0.63
CCDC39-201ENST00000442201 EID1Q9Y6B2 187 aa11.11□□□□□ -0.63
CCDC39-201ENST00000442201 UBR1Q8IWV7 1749 aa11.11□□□□□ -0.63
CCDC39-201ENST00000442201 SBNO2Q9Y2G9 1366 aa11.1□□□□□ -0.63
CCDC39-201ENST00000442201 TXNDC2Q86VQ3 553 aa11.1□□□□□ -0.63
CCDC39-201ENST00000442201 BCANQ96GW7 911 aa11.1□□□□□ -0.63
CCDC39-201ENST00000442201 TSHZ2Q9NRE2 1034 aa11.1□□□□□ -0.63
CCDC39-201ENST00000442201 ALKQ9UM73 1620 aa11.1□□□□□ -0.63
CCDC39-201ENST00000442201 STK26Q9P289 416 aa11.1□□□□□ -0.63
CCDC39-201ENST00000442201 YTHDC2Q9H6S0 1430 aaKnown RBP11.08□□□□□ -0.64
CCDC39-201ENST00000442201 LTKP29376 864 aa11.08□□□□□ -0.64
CCDC39-201ENST00000442201 ASXL1Q8IXJ9 1541 aa11.08□□□□□ -0.64
CCDC39-201ENST00000442201 MYO3AQ8NEV4 1616 aa11.08□□□□□ -0.64
CCDC39-201ENST00000442201 ARHGAP23Q9P227 1491 aa11.08□□□□□ -0.64
CCDC39-201ENST00000442201 SLIT1O75093 1534 aa11.07□□□□□ -0.64
CCDC39-201ENST00000442201 PLEKHG1Q9ULL1 1385 aa11.07□□□□□ -0.64
CCDC39-201ENST00000442201 PTPRMP28827 1452 aa11.06□□□□□ -0.64
CCDC39-201ENST00000442201 CEP170BQ9Y4F5 1589 aaPredicted RBP11.06□□□□□ -0.64
CCDC39-201ENST00000442201 LRPPRCP42704 1394 aaKnown RBP11.06□□□□□ -0.64
CCDC39-201ENST00000442201 POGKQ9P215 609 aa11.06□□□□□ -0.64
CCDC39-201ENST00000442201 CCER2I3L3R5 266 aa11.05□□□□□ -0.64
CCDC39-201ENST00000442201 EIF5BO60841 1220 aaKnown RBP11.05□□□□□ -0.64
CCDC39-201ENST00000442201 PRAM1Q96QH2 718 aa11.05□□□□□ -0.64
CCDC39-201ENST00000442201 ABCC11Q96J66 1382 aa11.05□□□□□ -0.64
CCDC39-201ENST00000442201 METP08581 1390 aa11.04□□□□□ -0.64
CCDC39-201ENST00000442201 SAFB2Q14151 953 aaKnown RBP eCLIP11.04□□□□□ -0.64
CCDC39-201ENST00000442201 PRKRIP1Q9H875 184 aaPredicted RBP11.04□□□□□ -0.64
CCDC39-201ENST00000442201 ADAMTS13Q76LX8 1427 aa11.04□□□□□ -0.64
CCDC39-201ENST00000442201 EVC2Q86UK5 1308 aa11.04□□□□□ -0.64
CCDC39-201ENST00000442201 NRXN3Q9Y4C0 1643 aa11.04□□□□□ -0.64
CCDC39-201ENST00000442201 PANK3Q9H999 370 aa11.03□□□□□ -0.64
CCDC39-201ENST00000442201 ANO8Q9HCE9 1232 aaPredicted RBP11.03□□□□□ -0.64
CCDC39-201ENST00000442201 ANKLE2Q86XL3 938 aa11.03□□□□□ -0.64
CCDC39-201ENST00000442201 ARHGEF28Q8N1W1 1705 aaKnown RBP11.02□□□□□ -0.64
CCDC39-201ENST00000442201 SLC26A8Q96RN1 970 aa11.02□□□□□ -0.65
CCDC39-201ENST00000442201 TBX22Q9Y458 520 aa11.02□□□□□ -0.65
CCDC39-201ENST00000442201 DLC1Q96QB1 1528 aa11.02□□□□□ -0.65
CCDC39-201ENST00000442201 QRICH2Q9H0J4 1663 aa11.02□□□□□ -0.65
CCDC39-201ENST00000442201 PUS7Q96PZ0 661 aaKnown RBP11.02□□□□□ -0.65
CCDC39-201ENST00000442201 SETD1AO15047 1707 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms