RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 FAM50AQ14320 339 aaKnown RBP11.95□□□□□ -0.5
CD44-211ENST00000442151 STAG3Q9UJ98 1225 aa11.95□□□□□ -0.5
CD44-211ENST00000442151 ABCC3O15438 1527 aa11.94□□□□□ -0.5
CD44-211ENST00000442151 ZNF335Q9H4Z2 1342 aaPredicted RBP11.94□□□□□ -0.5
CD44-211ENST00000442151 ARHGAP31Q2M1Z3 1444 aa11.94□□□□□ -0.5
CD44-211ENST00000442151 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.93□□□□□ -0.5
CD44-211ENST00000442151 CPS1P31327 1500 aa11.93□□□□□ -0.5
CD44-211ENST00000442151 HDGFP51858 240 aaKnown RBP11.93□□□□□ -0.5
CD44-211ENST00000442151 CHIC2Q9UKJ5 165 aa11.93□□□□□ -0.5
CD44-211ENST00000442151 SPATA31D1Q6ZQQ2 1576 aa11.92□□□□□ -0.5
CD44-211ENST00000442151 ERVK-7P63135 1459 aa11.92□□□□□ -0.5
CD44-211ENST00000442151 NPHP4O75161 1426 aaPredicted RBP11.91□□□□□ -0.5
CD44-211ENST00000442151 MED14O60244 1454 aa11.91□□□□□ -0.5
CD44-211ENST00000442151 TXNDC2Q86VQ3 553 aa11.9□□□□□ -0.5
CD44-211ENST00000442151 SLC52A1Q9NWF4 448 aa11.9□□□□□ -0.5
CD44-211ENST00000442151 SSUH2Q9Y2M2 353 aa11.9□□□□□ -0.5
CD44-211ENST00000442151 POLR1AO95602 1720 aaPredicted RBP11.9□□□□□ -0.5
CD44-211ENST00000442151 DEPDC5O75140 1603 aa11.9□□□□□ -0.51
CD44-211ENST00000442151 CROCC2H7BZ55 1655 aa11.89□□□□□ -0.51
CD44-211ENST00000442151 PRR29P0C7W0 189 aa11.88□□□□□ -0.51
CD44-211ENST00000442151 PRDM15P57071 1507 aaPredicted RBP11.87□□□□□ -0.51
CD44-211ENST00000442151 FOXD4L1Q9NU39 408 aa11.87□□□□□ -0.51
CD44-211ENST00000442151 ADGRL2O95490 1459 aa11.87□□□□□ -0.51
CD44-211ENST00000442151 DISP3Q9P2K9 1392 aa11.86□□□□□ -0.51
CD44-211ENST00000442151 LMTK2Q8IWU2 1503 aa11.86□□□□□ -0.51
CD44-211ENST00000442151 ANKRD50Q9ULJ7 1429 aa11.85□□□□□ -0.51
CD44-211ENST00000442151 MROH1Q8NDA8 1641 aa11.85□□□□□ -0.51
CD44-211ENST00000442151 CEP152O94986 1710 aa11.85□□□□□ -0.51
CD44-211ENST00000442151 SCAF11Q99590 1463 aaKnown RBP11.84□□□□□ -0.51
CD44-211ENST00000442151 ZNF692Q9BU19 519 aaPredicted RBP11.84□□□□□ -0.51
CD44-211ENST00000442151 NEURL4Q96JN8 1562 aa11.84□□□□□ -0.51
CD44-211ENST00000442151 ROCK1Q13464 1354 aa11.84□□□□□ -0.51
CD44-211ENST00000442151 IDI1Q13907 227 aa11.83□□□□□ -0.51
CD44-211ENST00000442151 IQGAP1P46940 1657 aa11.83□□□□□ -0.52
CD44-211ENST00000442151 CFAP65Q6ZU64 1925 aaKnown RBP11.83□□□□□ -0.52
CD44-211ENST00000442151 RPRD2Q5VT52 1461 aaKnown RBP11.83□□□□□ -0.52
CD44-211ENST00000442151 BCANQ96GW7 911 aa11.83□□□□□ -0.52
CD44-211ENST00000442151 TMEM2Q9UHN6 1383 aa11.82□□□□□ -0.52
CD44-211ENST00000442151 SLIT1O75093 1534 aa11.82□□□□□ -0.52
CD44-211ENST00000442151 PIP4K2BP78356 416 aa11.82□□□□□ -0.52
CD44-211ENST00000442151 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.82□□□□□ -0.52
CD44-211ENST00000442151 ARHGAP23Q9P227 1491 aa11.82□□□□□ -0.52
CD44-211ENST00000442151 KDM5AP29375 1690 aaKnown RBP11.81□□□□□ -0.52
CD44-211ENST00000442151 UBR1Q8IWV7 1749 aa11.81□□□□□ -0.52
CD44-211ENST00000442151 LTKP29376 864 aa11.81□□□□□ -0.52
CD44-211ENST00000442151 FARP1Q9Y4F1 1045 aaPredicted RBP11.8□□□□□ -0.52
CD44-211ENST00000442151 VWDEQ8N2E2 1590 aa11.8□□□□□ -0.52
CD44-211ENST00000442151 EFCAB6Q5THR3 1501 aa11.79□□□□□ -0.52
CD44-211ENST00000442151 ZNF579Q8NAF0 562 aaKnown RBP11.79□□□□□ -0.52
CD44-211ENST00000442151 NOS1P29475 1434 aa11.79□□□□□ -0.52
CD44-211ENST00000442151 PPP1R15AO75807 674 aaPredicted RBP11.79□□□□□ -0.52
CD44-211ENST00000442151 KCNA6P17658 529 aa11.79□□□□□ -0.52
CD44-211ENST00000442151 SYNMO15061 1565 aa11.76□□□□□ -0.53
CD44-211ENST00000442151 PIK3C2BO00750 1634 aa11.76□□□□□ -0.53
CD44-211ENST00000442151 CHGAP10645 457 aaKnown RBP11.76□□□□□ -0.53
CD44-211ENST00000442151 HSPA1LP34931 641 aa11.76□□□□□ -0.53
CD44-211ENST00000442151 ITGAEP38570 1179 aa11.76□□□□□ -0.53
CD44-211ENST00000442151 PROSER2Q86WR7 435 aaPredicted RBP11.76□□□□□ -0.53
CD44-211ENST00000442151 LRRC7Q96NW7 1537 aa11.75□□□□□ -0.53
CD44-211ENST00000442151 NUP155O75694 1391 aa11.75□□□□□ -0.53
CD44-211ENST00000442151 POTEB2H3BUK9 544 aa11.75□□□□□ -0.53
CD44-211ENST00000442151 TET3O43151 1660 aa11.74□□□□□ -0.53
CD44-211ENST00000442151 SOCS7O14512 581 aa11.74□□□□□ -0.53
CD44-211ENST00000442151 TBX22Q9Y458 520 aa11.74□□□□□ -0.53
CD44-211ENST00000442151 ADGRB3O60242 1522 aa11.73□□□□□ -0.53
CD44-211ENST00000442151 ACIN1Q9UKV3 1341 aaKnown RBP11.72□□□□□ -0.53
CD44-211ENST00000442151 SLC26A8Q96RN1 970 aa11.72□□□□□ -0.53
CD44-211ENST00000442151 GCC2Q8IWJ2 1684 aa11.72□□□□□ -0.53
CD44-211ENST00000442151 PLEKHG1Q9ULL1 1385 aa11.72□□□□□ -0.53
CD44-211ENST00000442151 UNC13BO14795 1591 aa11.71□□□□□ -0.53
CD44-211ENST00000442151 RIMS2Q9UQ26 1411 aa11.71□□□□□ -0.54
CD44-211ENST00000442151 MSH6P52701 1360 aa11.7□□□□□ -0.54
CD44-211ENST00000442151 PIK3R4Q99570 1358 aa11.69□□□□□ -0.54
CD44-211ENST00000442151 NCOA3Q9Y6Q9 1424 aa11.69□□□□□ -0.54
CD44-211ENST00000442151 PPARGC1BQ86YN6 1023 aaKnown RBP11.69□□□□□ -0.54
CD44-211ENST00000442151 NKTRP30414 1462 aaKnown RBP11.69□□□□□ -0.54
CD44-211ENST00000442151 FAM135BQ49AJ0 1406 aa11.68□□□□□ -0.54
CD44-211ENST00000442151 IQGAP3Q86VI3 1631 aa11.68□□□□□ -0.54
CD44-211ENST00000442151 TMEM94Q12767 1356 aa11.68□□□□□ -0.54
CD44-211ENST00000442151 ILDR2Q71H61 639 aa11.67□□□□□ -0.54
CD44-211ENST00000442151 ATXN8OSP0DMR3 200 aa11.67□□□□□ -0.54
CD44-211ENST00000442151 ZNF326Q5BKZ1 582 aaKnown RBP11.67□□□□□ -0.54
CD44-211ENST00000442151 C14orf37Q86TY3 774 aa11.67□□□□□ -0.54
CD44-211ENST00000442151 ZFYVE9O95405 1425 aa11.66□□□□□ -0.54
CD44-211ENST00000442151 RRBP1Q9P2E9 1410 aaKnown RBP11.66□□□□□ -0.54
CD44-211ENST00000442151 STRCP1A6NGW2 1772 aa11.66□□□□□ -0.54
CD44-211ENST00000442151 CADPS2Q86UW7 1296 aa11.65□□□□□ -0.54
CD44-211ENST00000442151 TRIM52Q96A61 297 aa11.65□□□□□ -0.54
CD44-211ENST00000442151 ZRANB1Q9UGI0 708 aa11.65□□□□□ -0.54
CD44-211ENST00000442151 TMEM131LA2VDJ0 1609 aa11.65□□□□□ -0.54
CD44-211ENST00000442151 ATF3P18847 181 aa11.65□□□□□ -0.55
CD44-211ENST00000442151 SLAIN2Q9P270 581 aa11.65□□□□□ -0.55
CD44-211ENST00000442151 E9PCH4 1651 aa11.64□□□□□ -0.55
CD44-211ENST00000442151 DIP2AQ14689 1571 aa11.63□□□□□ -0.55
CD44-211ENST00000442151 C19orf44Q9H6X5 657 aa11.63□□□□□ -0.55
CD44-211ENST00000442151 VGFO15240 615 aaPredicted RBP11.63□□□□□ -0.55
CD44-211ENST00000442151 RPGRIP1LQ68CZ1 1315 aa11.62□□□□□ -0.55
CD44-211ENST00000442151 NWD1Q149M9 1564 aa11.62□□□□□ -0.55
CD44-211ENST00000442151 GALR2O43603 387 aaPredicted RBP11.62□□□□□ -0.55
CD44-211ENST00000442151 MAMSTRQ6ZN01 415 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms