RNA–Protein interactions for RNA: ENST00000440127.1

HMGB3P11-201, Transcript of high mobility group box 3 pseudogene 11, humanhuman

BASIC

Gene HMGB3P11, Length 604 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P11-201ENST00000440127 TMEM134Q9H6X4 195 aa7.51□□□□□ -1.21
HMGB3P11-201ENST00000440127 RCCD1A6NED2 376 aa7.5□□□□□ -1.21
HMGB3P11-201ENST00000440127 IL21Q9HBE4 155 aa7.49□□□□□ -1.21
HMGB3P11-201ENST00000440127 C3orf80F5H4A9 247 aa7.48□□□□□ -1.21
HMGB3P11-201ENST00000440127 METTL3Q86U44 580 aaKnown RBP7.48□□□□□ -1.21
HMGB3P11-201ENST00000440127 PXYLP1Q8TE99 480 aa7.48□□□□□ -1.21
HMGB3P11-201ENST00000440127 SULF1Q8IWU6 871 aa7.47□□□□□ -1.21
HMGB3P11-201ENST00000440127 GPR37O15354 613 aa7.45□□□□□ -1.22
HMGB3P11-201ENST00000440127 GGCXP38435 758 aa7.45□□□□□ -1.22
HMGB3P11-201ENST00000440127 MAP2K5Q13163 448 aa7.45□□□□□ -1.22
HMGB3P11-201ENST00000440127 Q6ZNB5 142 aa7.45□□□□□ -1.22
HMGB3P11-201ENST00000440127 MTRQ99707 1265 aa7.45□□□□□ -1.22
HMGB3P11-201ENST00000440127 PCDHB3Q9Y5E6 796 aa7.45□□□□□ -1.22
HMGB3P11-201ENST00000440127 CFHP08603 1231 aa7.43□□□□□ -1.22
HMGB3P11-201ENST00000440127 APLP1P51693 650 aa7.43□□□□□ -1.22
HMGB3P11-201ENST00000440127 DAXXQ9UER7 740 aaPredicted RBP7.43□□□□□ -1.22
HMGB3P11-201ENST00000440127 MINK1Q8N4C8 1332 aaPredicted RBP7.43□□□□□ -1.22
HMGB3P11-201ENST00000440127 FAM161AQ3B820 660 aa7.42□□□□□ -1.22
HMGB3P11-201ENST00000440127 TJAP1Q5JTD0 557 aa7.42□□□□□ -1.22
HMGB3P11-201ENST00000440127 ACTN4O43707 911 aaKnown RBP7.41□□□□□ -1.22
HMGB3P11-201ENST00000440127 NR1I2O75469 434 aa7.41□□□□□ -1.22
HMGB3P11-201ENST00000440127 RDH13Q8NBN7 331 aa7.41□□□□□ -1.22
HMGB3P11-201ENST00000440127 LMOD2Q6P5Q4 547 aa7.4□□□□□ -1.22
HMGB3P11-201ENST00000440127 COPS2P61201 443 aa7.39□□□□□ -1.23
HMGB3P11-201ENST00000440127 GRIPAP1Q4V328 841 aa7.39□□□□□ -1.23
HMGB3P11-201ENST00000440127 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.39□□□□□ -1.23
HMGB3P11-201ENST00000440127 KRI1Q8N9T8 703 aaKnown RBP7.39□□□□□ -1.23
HMGB3P11-201ENST00000440127 ZPR1O75312 459 aa7.38□□□□□ -1.23
HMGB3P11-201ENST00000440127 FECHP22830 423 aa7.38□□□□□ -1.23
HMGB3P11-201ENST00000440127 DDX11L8A8MPP1 907 aa7.37□□□□□ -1.23
HMGB3P11-201ENST00000440127 IRF6O14896 467 aa7.37□□□□□ -1.23
HMGB3P11-201ENST00000440127 TMUB1Q9BVT8 246 aa7.37□□□□□ -1.23
HMGB3P11-201ENST00000440127 CLCN1P35523 988 aa7.36□□□□□ -1.23
HMGB3P11-201ENST00000440127 BLOC1S3Q6QNY0 202 aa7.35□□□□□ -1.23
HMGB3P11-201ENST00000440127 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.35□□□□□ -1.23
HMGB3P11-201ENST00000440127 SLC10A3P09131 477 aa7.34□□□□□ -1.23
HMGB3P11-201ENST00000440127 CCDC102AQ96A19 550 aa7.34□□□□□ -1.23
HMGB3P11-201ENST00000440127 ATP6V1AP38606 617 aa7.33□□□□□ -1.24
HMGB3P11-201ENST00000440127 GFRA3O60609 400 aa7.32□□□□□ -1.24
HMGB3P11-201ENST00000440127 ADH1BP00325 375 aa7.32□□□□□ -1.24
HMGB3P11-201ENST00000440127 USP46P62068 366 aa7.32□□□□□ -1.24
HMGB3P11-201ENST00000440127 PPP1R18Q6NYC8 613 aa7.32□□□□□ -1.24
HMGB3P11-201ENST00000440127 ZNF516Q92618 1163 aa7.32□□□□□ -1.24
HMGB3P11-201ENST00000440127 GPCPD1Q9NPB8 672 aa7.32□□□□□ -1.24
HMGB3P11-201ENST00000440127 V9GY48 417 aaPredicted RBP7.32□□□□□ -1.24
HMGB3P11-201ENST00000440127 GCGRP47871 477 aa7.31□□□□□ -1.24
HMGB3P11-201ENST00000440127 LAPTM4AQ15012 233 aa7.31□□□□□ -1.24
HMGB3P11-201ENST00000440127 Q3C1V9 767 aa7.31□□□□□ -1.24
HMGB3P11-201ENST00000440127 MDM2Q00987 491 aaPredicted RBP7.3□□□□□ -1.24
HMGB3P11-201ENST00000440127 BARGINQ6ZT62 677 aa7.3□□□□□ -1.24
HMGB3P11-201ENST00000440127 ZMYND10O75800 440 aa7.29□□□□□ -1.24
HMGB3P11-201ENST00000440127 FMNL1O95466 1100 aaPredicted RBP7.29□□□□□ -1.24
HMGB3P11-201ENST00000440127 BCANQ96GW7 911 aa7.29□□□□□ -1.24
HMGB3P11-201ENST00000440127 PHOX2BQ99453 314 aa7.29□□□□□ -1.24
HMGB3P11-201ENST00000440127 CD46P15529 392 aa7.28□□□□□ -1.24
HMGB3P11-201ENST00000440127 FUT2Q10981 343 aa7.28□□□□□ -1.24
HMGB3P11-201ENST00000440127 TTLL12Q14166 644 aaPredicted RBP7.28□□□□□ -1.24
HMGB3P11-201ENST00000440127 TRAF7Q6Q0C0 670 aa7.28□□□□□ -1.24
HMGB3P11-201ENST00000440127 ZC3H15Q8WU90 426 aaKnown RBP7.28□□□□□ -1.24
HMGB3P11-201ENST00000440127 NLRP7Q8WX94 980 aa7.28□□□□□ -1.24
HMGB3P11-201ENST00000440127 SLC6A16Q9GZN6 736 aa7.28□□□□□ -1.24
HMGB3P11-201ENST00000440127 SALL2Q9Y467 1007 aaPredicted RBP7.28□□□□□ -1.24
HMGB3P11-201ENST00000440127 KDM4AO75164 1064 aa7.27□□□□□ -1.25
HMGB3P11-201ENST00000440127 MORN1Q5T089 497 aa7.27□□□□□ -1.25
HMGB3P11-201ENST00000440127 SCUBE3Q8IX30 993 aa7.27□□□□□ -1.25
HMGB3P11-201ENST00000440127 ANKLE1Q8NAG6 615 aa7.27□□□□□ -1.25
HMGB3P11-201ENST00000440127 SPSB2Q99619 263 aa7.27□□□□□ -1.25
HMGB3P11-201ENST00000440127 PRKD2Q9BZL6 878 aa7.27□□□□□ -1.25
HMGB3P11-201ENST00000440127 TLL1O43897 1013 aa7.26□□□□□ -1.25
HMGB3P11-201ENST00000440127 NUTM1Q86Y26 1132 aa7.26□□□□□ -1.25
HMGB3P11-201ENST00000440127 NKX2-3Q8TAU0 364 aa7.26□□□□□ -1.25
HMGB3P11-201ENST00000440127 DIXDC1Q155Q3 683 aa7.25□□□□□ -1.25
HMGB3P11-201ENST00000440127 AMHR2Q16671 573 aa7.25□□□□□ -1.25
HMGB3P11-201ENST00000440127 PUS10Q3MIT2 529 aaKnown RBP7.25□□□□□ -1.25
HMGB3P11-201ENST00000440127 FAM217BQ9NTX9 383 aaPredicted RBP7.25□□□□□ -1.25
HMGB3P11-201ENST00000440127 S1PR4O95977 384 aa7.24□□□□□ -1.25
HMGB3P11-201ENST00000440127 AK7Q96M32 723 aa7.24□□□□□ -1.25
HMGB3P11-201ENST00000440127 RNF223E7ERA6 249 aa7.23□□□□□ -1.25
HMGB3P11-201ENST00000440127 LCE2BO14633 110 aa7.22□□□□□ -1.25
HMGB3P11-201ENST00000440127 MSS51Q4VC12 460 aa7.22□□□□□ -1.25
HMGB3P11-201ENST00000440127 SLC27A5Q9Y2P5 690 aa7.22□□□□□ -1.25
HMGB3P11-201ENST00000440127 SLC19A1P41440 591 aa7.21□□□□□ -1.26
HMGB3P11-201ENST00000440127 NRG2O14511 850 aaPredicted RBP7.2□□□□□ -1.26
HMGB3P11-201ENST00000440127 HOXA2O43364 376 aa7.2□□□□□ -1.26
HMGB3P11-201ENST00000440127 SSTR3P32745 418 aaPredicted RBP7.19□□□□□ -1.26
HMGB3P11-201ENST00000440127 BRICD5Q6PL45 260 aa7.19□□□□□ -1.26
HMGB3P11-201ENST00000440127 GIGYF2Q6Y7W6 1299 aaKnown RBP7.19□□□□□ -1.26
HMGB3P11-201ENST00000440127 THAP11Q96EK4 314 aa7.19□□□□□ -1.26
HMGB3P11-201ENST00000440127 ZBTB24O43167 697 aaPredicted RBP7.18□□□□□ -1.26
HMGB3P11-201ENST00000440127 RPIAP49247 311 aa7.18□□□□□ -1.26
HMGB3P11-201ENST00000440127 ZNF787Q6DD87 383 aa7.18□□□□□ -1.26
HMGB3P11-201ENST00000440127 USB1Q9BQ65 265 aaKnown RBP7.18□□□□□ -1.26
HMGB3P11-201ENST00000440127 TRIM66O15016 1216 aa7.16□□□□□ -1.26
HMGB3P11-201ENST00000440127 CD2BP2O95400 341 aaKnown RBP7.16□□□□□ -1.26
HMGB3P11-201ENST00000440127 ZNF598Q86UK7 904 aaKnown RBP7.16□□□□□ -1.26
HMGB3P11-201ENST00000440127 PDZRN3Q9UPQ7 1066 aa7.16□□□□□ -1.26
HMGB3P11-201ENST00000440127 FCF1Q9Y324 198 aaKnown RBP7.16□□□□□ -1.26
HMGB3P11-201ENST00000440127 FDX1P10109 184 aa7.15□□□□□ -1.26
HMGB3P11-201ENST00000440127 GJA5P36382 358 aa7.15□□□□□ -1.26
HMGB3P11-201ENST00000440127 SPRYD7Q5W111 196 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms