RNA–Protein interactions for RNA: ENST00000439029.5

SMPD4-208, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-208ENST00000439029 CDK12Q9NYV4 1490 aaPredicted RBP15.64■□□□□ 0.09
SMPD4-208ENST00000439029 MAST1Q9Y2H9 1570 aa15.63■□□□□ 0.09
SMPD4-208ENST00000439029 KDM5AP29375 1690 aaKnown RBP15.63■□□□□ 0.09
SMPD4-208ENST00000439029 QTRT2Q9H974 415 aaKnown RBP15.62■□□□□ 0.09
SMPD4-208ENST00000439029 RRP7BPQ9NSQ0 103 aa15.62■□□□□ 0.09
SMPD4-208ENST00000439029 SHPRHQ149N8 1683 aa15.62■□□□□ 0.09
SMPD4-208ENST00000439029 C8orf37Q96NL8 207 aa15.61■□□□□ 0.09
SMPD4-208ENST00000439029 DUOX2Q9NRD8 1548 aa15.6■□□□□ 0.09
SMPD4-208ENST00000439029 ATF3P18847 181 aa15.6■□□□□ 0.09
SMPD4-208ENST00000439029 AHDC1Q5TGY3 1603 aaPredicted RBP15.59■□□□□ 0.09
SMPD4-208ENST00000439029 PPP1R15AO75807 674 aaPredicted RBP15.59■□□□□ 0.09
SMPD4-208ENST00000439029 RBM6P78332 1123 aaKnown RBP15.59■□□□□ 0.09
SMPD4-208ENST00000439029 ZRANB1Q9UGI0 708 aa15.59■□□□□ 0.09
SMPD4-208ENST00000439029 KIF15Q9NS87 1388 aa15.59■□□□□ 0.09
SMPD4-208ENST00000439029 BRINP3Q76B58 766 aa15.58■□□□□ 0.08
SMPD4-208ENST00000439029 CHD2O14647 1828 aaKnown RBP15.58■□□□□ 0.08
SMPD4-208ENST00000439029 SETBP1Q9Y6X0 1596 aa15.58■□□□□ 0.08
SMPD4-208ENST00000439029 CADPS2Q86UW7 1296 aa15.57■□□□□ 0.08
SMPD4-208ENST00000439029 C19orf44Q9H6X5 657 aa15.56■□□□□ 0.08
SMPD4-208ENST00000439029 KANK1Q14678 1352 aa15.56■□□□□ 0.08
SMPD4-208ENST00000439029 ADGRB3O60242 1522 aa15.56■□□□□ 0.08
SMPD4-208ENST00000439029 DIP2AQ14689 1571 aa15.56■□□□□ 0.08
SMPD4-208ENST00000439029 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.56■□□□□ 0.08
SMPD4-208ENST00000439029 DDX17Q92841 729 aaKnown RBP15.55■□□□□ 0.08
SMPD4-208ENST00000439029 PLEKHG1Q9ULL1 1385 aa15.54■□□□□ 0.08
SMPD4-208ENST00000439029 ADAMTS2O95450 1211 aa15.54■□□□□ 0.08
SMPD4-208ENST00000439029 ERBINQ96RT1 1412 aa15.52■□□□□ 0.08
SMPD4-208ENST00000439029 RIMS2Q9UQ26 1411 aa15.52■□□□□ 0.08
SMPD4-208ENST00000439029 ATAD2Q6PL18 1390 aa15.52■□□□□ 0.08
SMPD4-208ENST00000439029 NGLY1Q96IV0 654 aa15.52■□□□□ 0.08
SMPD4-208ENST00000439029 NOS1P29475 1434 aa15.51■□□□□ 0.07
SMPD4-208ENST00000439029 CHGAP10645 457 aaKnown RBP15.51■□□□□ 0.07
SMPD4-208ENST00000439029 TBX22Q9Y458 520 aa15.51■□□□□ 0.07
SMPD4-208ENST00000439029 MYO5BQ9ULV0 1848 aa15.51■□□□□ 0.07
SMPD4-208ENST00000439029 ZFYVE9O95405 1425 aa15.51■□□□□ 0.07
SMPD4-208ENST00000439029 SLC52A1Q9NWF4 448 aa15.5■□□□□ 0.07
SMPD4-208ENST00000439029 MYOM3Q5VTT5 1437 aa15.5■□□□□ 0.07
SMPD4-208ENST00000439029 NCOA3Q9Y6Q9 1424 aa15.5■□□□□ 0.07
SMPD4-208ENST00000439029 KANK4Q5T7N3 995 aaPredicted RBP15.49■□□□□ 0.07
SMPD4-208ENST00000439029 CHIC2Q9UKJ5 165 aa15.49■□□□□ 0.07
SMPD4-208ENST00000439029 ASXL1Q8IXJ9 1541 aa15.48■□□□□ 0.07
SMPD4-208ENST00000439029 FOXD1Q16676 465 aa15.48■□□□□ 0.07
SMPD4-208ENST00000439029 LRRC59Q96AG4 307 aaKnown RBP15.48■□□□□ 0.07
SMPD4-208ENST00000439029 ABCC5O15440 1437 aa15.48■□□□□ 0.07
SMPD4-208ENST00000439029 SETD5Q9C0A6 1442 aa15.48■□□□□ 0.07
SMPD4-208ENST00000439029 ADAMTS13Q76LX8 1427 aa15.47■□□□□ 0.07
SMPD4-208ENST00000439029 AMOTL2Q9Y2J4 779 aa15.47■□□□□ 0.07
SMPD4-208ENST00000439029 LMTK2Q8IWU2 1503 aa15.47■□□□□ 0.07
SMPD4-208ENST00000439029 PNPLA6Q8IY17 1366 aa15.47■□□□□ 0.07
SMPD4-208ENST00000439029 HDGFP51858 240 aaKnown RBP15.46■□□□□ 0.07
SMPD4-208ENST00000439029 USP21Q9UK80 565 aa15.46■□□□□ 0.07
SMPD4-208ENST00000439029 GCC2Q8IWJ2 1684 aa15.44■□□□□ 0.06
SMPD4-208ENST00000439029 PTPRUQ92729 1446 aa15.43■□□□□ 0.06
SMPD4-208ENST00000439029 MST1RQ04912 1400 aa15.43■□□□□ 0.06
SMPD4-208ENST00000439029 TRPC5Q9UL62 973 aaPredicted RBP15.42■□□□□ 0.06
SMPD4-208ENST00000439029 NHSL1Q5SYE7 1610 aa15.42■□□□□ 0.06
SMPD4-208ENST00000439029 CROCC2H7BZ55 1655 aa15.41■□□□□ 0.06
SMPD4-208ENST00000439029 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.41■□□□□ 0.06
SMPD4-208ENST00000439029 TMEM131LA2VDJ0 1609 aa15.4■□□□□ 0.06
SMPD4-208ENST00000439029 DAPK1P53355 1430 aa15.4■□□□□ 0.06
SMPD4-208ENST00000439029 PIK3R4Q99570 1358 aa15.38■□□□□ 0.05
SMPD4-208ENST00000439029 ANKRD30AQ9BXX3 1397 aa15.37■□□□□ 0.05
SMPD4-208ENST00000439029 DEFB132Q7Z7B7 95 aa15.37■□□□□ 0.05
SMPD4-208ENST00000439029 DCCP43146 1447 aa15.36■□□□□ 0.05
SMPD4-208ENST00000439029 CCDC125Q86Z20 511 aa15.36■□□□□ 0.05
SMPD4-208ENST00000439029 TRPM2O94759 1503 aa15.36■□□□□ 0.05
SMPD4-208ENST00000439029 PTPN23Q9H3S7 1636 aa15.35■□□□□ 0.05
SMPD4-208ENST00000439029 ATRNO75882 1429 aa15.35■□□□□ 0.05
SMPD4-208ENST00000439029 FNBP4Q8N3X1 1017 aaPredicted RBP15.35■□□□□ 0.05
SMPD4-208ENST00000439029 RPRD2Q5VT52 1461 aaKnown RBP15.33■□□□□ 0.04
SMPD4-208ENST00000439029 PSDA5PKW4 1024 aaPredicted RBP15.32■□□□□ 0.04
SMPD4-208ENST00000439029 ORAI2Q96SN7 254 aa15.32■□□□□ 0.04
SMPD4-208ENST00000439029 EP400Q96L91 3159 aa15.32■□□□□ 0.04
SMPD4-208ENST00000439029 VPS8Q8N3P4 1428 aa15.31■□□□□ 0.04
SMPD4-208ENST00000439029 UNC13BO14795 1591 aa15.31■□□□□ 0.04
SMPD4-208ENST00000439029 METP08581 1390 aa15.3■□□□□ 0.04
SMPD4-208ENST00000439029 XRN1Q8IZH2 1706 aaKnown RBP15.3■□□□□ 0.04
SMPD4-208ENST00000439029 C1orf167Q5SNV9 1468 aa15.29■□□□□ 0.04
SMPD4-208ENST00000439029 PTCH1Q13635 1447 aa15.29■□□□□ 0.04
SMPD4-208ENST00000439029 ADGRL3Q9HAR2 1447 aa15.29■□□□□ 0.04
SMPD4-208ENST00000439029 SOS2Q07890 1332 aaPredicted RBP15.29■□□□□ 0.04
SMPD4-208ENST00000439029 GJD4Q96KN9 370 aaPredicted RBP15.29■□□□□ 0.04
SMPD4-208ENST00000439029 BCL9LQ86UU0 1499 aa15.28■□□□□ 0.04
SMPD4-208ENST00000439029 BLMP54132 1417 aaPredicted RBP15.28■□□□□ 0.04
SMPD4-208ENST00000439029 ANKRD50Q9ULJ7 1429 aa15.26■□□□□ 0.03
SMPD4-208ENST00000439029 NALCNQ8IZF0 1738 aa15.26■□□□□ 0.03
SMPD4-208ENST00000439029 NRXN3Q9Y4C0 1643 aa15.26■□□□□ 0.03
SMPD4-208ENST00000439029 XPCQ01831 940 aaPredicted RBP15.26■□□□□ 0.03
SMPD4-208ENST00000439029 SF3B2Q13435 895 aaKnown RBP15.26■□□□□ 0.03
SMPD4-208ENST00000439029 LRP5O75197 1615 aa15.25■□□□□ 0.03
SMPD4-208ENST00000439029 ZNF326Q5BKZ1 582 aaKnown RBP15.24■□□□□ 0.03
SMPD4-208ENST00000439029 E9PCH4 1651 aa15.23■□□□□ 0.03
SMPD4-208ENST00000439029 HRCP23327 699 aa15.23■□□□□ 0.03
SMPD4-208ENST00000439029 FAM50AQ14320 339 aaKnown RBP15.22■□□□□ 0.03
SMPD4-208ENST00000439029 MYOM2P54296 1465 aa15.21■□□□□ 0.03
SMPD4-208ENST00000439029 RALGAPBQ86X10 1494 aa15.21■□□□□ 0.03
SMPD4-208ENST00000439029 ADGRL2O95490 1459 aa15.2■□□□□ 0.02
SMPD4-208ENST00000439029 GLI3P10071 1580 aa15.2■□□□□ 0.02
SMPD4-208ENST00000439029 BRWD3Q6RI45 1802 aa15.2■□□□□ 0.02
SMPD4-208ENST00000439029 SEPT12Q8IYM1 358 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms