RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 ZNF710Q8N1W2 664 aa7.25□□□□□ -1.25
HMGB3-203ENST00000430118 PROCA1Q8NCQ7 364 aaPredicted RBP7.25□□□□□ -1.25
HMGB3-203ENST00000430118 TBC1D2Q9BYX2 928 aa7.25□□□□□ -1.25
HMGB3-203ENST00000430118 POTEB3A0JP26 581 aa7.24□□□□□ -1.25
HMGB3-203ENST00000430118 PSDA5PKW4 1024 aaPredicted RBP7.24□□□□□ -1.25
HMGB3-203ENST00000430118 RFC5P40937 340 aa7.24□□□□□ -1.25
HMGB3-203ENST00000430118 POTEBQ6S5H4 581 aa7.24□□□□□ -1.25
HMGB3-203ENST00000430118 SPNS2Q8IVW8 549 aa7.24□□□□□ -1.25
HMGB3-203ENST00000430118 ZNF454Q8N9F8 522 aa7.24□□□□□ -1.25
HMGB3-203ENST00000430118 CCDC97Q96F63 343 aaPredicted RBP7.24□□□□□ -1.25
HMGB3-203ENST00000430118 POLR3EQ9NVU0 708 aa7.24□□□□□ -1.25
HMGB3-203ENST00000430118 RIMBP2O15034 1052 aa7.23□□□□□ -1.25
HMGB3-203ENST00000430118 HOXB1P14653 301 aaPredicted RBP7.23□□□□□ -1.25
HMGB3-203ENST00000430118 WWC1Q8IX03 1113 aa7.23□□□□□ -1.25
HMGB3-203ENST00000430118 CDCA7LQ96GN5 454 aa7.23□□□□□ -1.25
HMGB3-203ENST00000430118 ATP1B4Q9UN42 357 aaPredicted RBP7.23□□□□□ -1.25
HMGB3-203ENST00000430118 PRM3Q9NNZ6 103 aa7.22□□□□□ -1.25
HMGB3-203ENST00000430118 COG6Q9Y2V7 657 aa7.22□□□□□ -1.25
HMGB3-203ENST00000430118 EIF4G1Q04637 1599 aaKnown RBP7.21□□□□□ -1.25
HMGB3-203ENST00000430118 ZBTB7CA1YPR0 619 aa7.21□□□□□ -1.26
HMGB3-203ENST00000430118 SPTLC1O15269 473 aa7.21□□□□□ -1.26
HMGB3-203ENST00000430118 CD46P15529 392 aa7.21□□□□□ -1.26
HMGB3-203ENST00000430118 MMRN1Q13201 1228 aa7.21□□□□□ -1.26
HMGB3-203ENST00000430118 FAM161AQ3B820 660 aa7.21□□□□□ -1.26
HMGB3-203ENST00000430118 HRCP23327 699 aa7.2□□□□□ -1.26
HMGB3-203ENST00000430118 RIC3Q7Z5B4 369 aa7.2□□□□□ -1.26
HMGB3-203ENST00000430118 SPIRE2Q8WWL2 714 aa7.2□□□□□ -1.26
HMGB3-203ENST00000430118 ADAM33Q9BZ11 813 aa7.2□□□□□ -1.26
HMGB3-203ENST00000430118 DNAJB2P25686 324 aa7.19□□□□□ -1.26
HMGB3-203ENST00000430118 PPP4R3BQ5MIZ7 849 aa7.19□□□□□ -1.26
HMGB3-203ENST00000430118 POM121Q96HA1 1249 aa7.19□□□□□ -1.26
HMGB3-203ENST00000430118 EYA1Q99502 592 aa7.19□□□□□ -1.26
HMGB3-203ENST00000430118 TRAIPQ9BWF2 469 aa7.19□□□□□ -1.26
HMGB3-203ENST00000430118 BCL2L12Q9HB09 334 aa7.19□□□□□ -1.26
HMGB3-203ENST00000430118 ZNF777Q9ULD5 760 aaPredicted RBP7.19□□□□□ -1.26
HMGB3-203ENST00000430118 ERBB3P21860 1342 aa7.19□□□□□ -1.26
HMGB3-203ENST00000430118 RCCD1A6NED2 376 aa7.18□□□□□ -1.26
HMGB3-203ENST00000430118 NBPF26B4DH59 902 aa7.18□□□□□ -1.26
HMGB3-203ENST00000430118 PPP1R3GB7ZBB8 358 aa7.18□□□□□ -1.26
HMGB3-203ENST00000430118 RANGAP1P46060 587 aaPredicted RBP7.18□□□□□ -1.26
HMGB3-203ENST00000430118 RSBN1LQ6PCB5 846 aaPredicted RBP7.18□□□□□ -1.26
HMGB3-203ENST00000430118 KRTAP3-3Q9BYR6 98 aa7.18□□□□□ -1.26
HMGB3-203ENST00000430118 KRTAP3-2Q9BYR7 98 aa7.18□□□□□ -1.26
HMGB3-203ENST00000430118 LIMD1Q9UGP4 676 aa7.18□□□□□ -1.26
HMGB3-203ENST00000430118 NUDT7P0C024 238 aa7.17□□□□□ -1.26
HMGB3-203ENST00000430118 PRPF38BQ5VTL8 546 aaKnown RBP7.17□□□□□ -1.26
HMGB3-203ENST00000430118 NUTM1Q86Y26 1132 aa7.17□□□□□ -1.26
HMGB3-203ENST00000430118 KCTD17Q8N5Z5 321 aa7.17□□□□□ -1.26
HMGB3-203ENST00000430118 NLRP7Q8WX94 980 aa7.17□□□□□ -1.26
HMGB3-203ENST00000430118 ZNF330Q9Y3S2 320 aaPredicted RBP7.17□□□□□ -1.26
HMGB3-203ENST00000430118 PPP1R15AO75807 674 aaPredicted RBP7.16□□□□□ -1.26
HMGB3-203ENST00000430118 GPR153Q6NV75 609 aa7.16□□□□□ -1.26
HMGB3-203ENST00000430118 TMEM134Q9H6X4 195 aa7.16□□□□□ -1.26
HMGB3-203ENST00000430118 SNRKQ9NRH2 765 aa7.16□□□□□ -1.26
HMGB3-203ENST00000430118 CUX2O14529 1486 aa7.16□□□□□ -1.26
HMGB3-203ENST00000430118 LILRB3O75022 631 aa7.15□□□□□ -1.26
HMGB3-203ENST00000430118 PTPREP23469 700 aa7.15□□□□□ -1.26
HMGB3-203ENST00000430118 USP46P62068 366 aa7.15□□□□□ -1.26
HMGB3-203ENST00000430118 PDE4CQ08493 712 aa7.15□□□□□ -1.26
HMGB3-203ENST00000430118 MTMR14Q8NCE2 650 aa7.15□□□□□ -1.26
HMGB3-203ENST00000430118 CCDC9Q9Y3X0 531 aaKnown RBP7.15□□□□□ -1.26
HMGB3-203ENST00000430118 ARSIQ5FYB1 569 aa7.14□□□□□ -1.27
HMGB3-203ENST00000430118 RSPH4AQ5TD94 716 aa7.14□□□□□ -1.27
HMGB3-203ENST00000430118 PACS2Q86VP3 889 aa7.14□□□□□ -1.27
HMGB3-203ENST00000430118 TRIM6-TRIM34B2RNG4 842 aa7.13□□□□□ -1.27
HMGB3-203ENST00000430118 VARS2Q5ST30 1063 aaKnown RBP7.13□□□□□ -1.27
HMGB3-203ENST00000430118 FAM198AQ9UFP1 575 aa7.13□□□□□ -1.27
HMGB3-203ENST00000430118 TSKSQ9UJT2 592 aa7.13□□□□□ -1.27
HMGB3-203ENST00000430118 NUDT18Q6ZVK8 323 aa7.12□□□□□ -1.27
HMGB3-203ENST00000430118 TATDN2Q93075 761 aa7.12□□□□□ -1.27
HMGB3-203ENST00000430118 MOXD2PA6NHM9 499 aa7.11□□□□□ -1.27
HMGB3-203ENST00000430118 DDX11L8A8MPP1 907 aa7.11□□□□□ -1.27
HMGB3-203ENST00000430118 COL9A1P20849 921 aa7.11□□□□□ -1.27
HMGB3-203ENST00000430118 LHX6Q9UPM6 363 aa7.11□□□□□ -1.27
HMGB3-203ENST00000430118 KDM4AO75164 1064 aa7.1□□□□□ -1.27
HMGB3-203ENST00000430118 FBXO31Q5XUX0 539 aaPredicted RBP7.1□□□□□ -1.27
HMGB3-203ENST00000430118 ZBTB3Q9H5J0 574 aa7.1□□□□□ -1.27
HMGB3-203ENST00000430118 GDPD2Q9HCC8 539 aa7.1□□□□□ -1.27
HMGB3-203ENST00000430118 PNMA3Q9UL41 463 aa7.1□□□□□ -1.27
HMGB3-203ENST00000430118 USP17L8P0C7I0 530 aa7.09□□□□□ -1.27
HMGB3-203ENST00000430118 WASHC4Q2M389 1173 aa7.09□□□□□ -1.27
HMGB3-203ENST00000430118 ZNF687Q8N1G0 1237 aa7.09□□□□□ -1.27
HMGB3-203ENST00000430118 KCNH8Q96L42 1107 aa7.09□□□□□ -1.27
HMGB3-203ENST00000430118 NDUFB9Q9Y6M9 179 aa7.09□□□□□ -1.27
HMGB3-203ENST00000430118 DCAF1Q9Y4B6 1507 aa7.09□□□□□ -1.27
HMGB3-203ENST00000430118 SCRIBQ14160 1630 aa7.09□□□□□ -1.28
HMGB3-203ENST00000430118 PATL2C9JE40 543 aaKnown RBP7.08□□□□□ -1.28
HMGB3-203ENST00000430118 QPCTQ16769 361 aa7.08□□□□□ -1.28
HMGB3-203ENST00000430118 NECTIN2Q92692 538 aa7.08□□□□□ -1.28
HMGB3-203ENST00000430118 KHSRPQ92945 711 aaKnown RBP eCLIP7.08□□□□□ -1.28
HMGB3-203ENST00000430118 CALR3Q96L12 384 aaKnown RBP7.08□□□□□ -1.28
HMGB3-203ENST00000430118 ERCC6Q03468 1493 aa7.07□□□□□ -1.28
HMGB3-203ENST00000430118 HOXA2O43364 376 aa7.07□□□□□ -1.28
HMGB3-203ENST00000430118 AP1G2O75843 785 aa7.07□□□□□ -1.28
HMGB3-203ENST00000430118 GCGRP47871 477 aa7.07□□□□□ -1.28
HMGB3-203ENST00000430118 ACIN1Q9UKV3 1341 aaKnown RBP7.06□□□□□ -1.28
HMGB3-203ENST00000430118 NUTM2BA6NNL0 878 aaPredicted RBP7.06□□□□□ -1.28
HMGB3-203ENST00000430118 NUTM2EB1AL46 878 aaPredicted RBP7.06□□□□□ -1.28
HMGB3-203ENST00000430118 ABL2P42684 1182 aa7.06□□□□□ -1.28
HMGB3-203ENST00000430118 NUTM2DQ5VT03 806 aaPredicted RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms