RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 HECW2Q9P2P5 1572 aa19.11■□□□□ 0.65
LIG1-202ENST00000427526 UGGT1Q9NYU2 1555 aa19.1■□□□□ 0.65
LIG1-202ENST00000427526 PDE3BQ13370 1112 aa19.09■□□□□ 0.65
LIG1-202ENST00000427526 INSRP06213 1382 aa19.09■□□□□ 0.65
LIG1-202ENST00000427526 RNF17Q9BXT8 1623 aaKnown RBP19.09■□□□□ 0.65
LIG1-202ENST00000427526 RRP1P56182 461 aaKnown RBP19.08■□□□□ 0.65
LIG1-202ENST00000427526 EFCAB6Q5THR3 1501 aa19.08■□□□□ 0.64
LIG1-202ENST00000427526 ZMYM4Q5VZL5 1548 aa19.08■□□□□ 0.64
LIG1-202ENST00000427526 ABCA6Q8N139 1617 aa19.08■□□□□ 0.64
LIG1-202ENST00000427526 PANK3Q9H999 370 aa19.08■□□□□ 0.64
LIG1-202ENST00000427526 MAP3K4Q9Y6R4 1608 aa19.07■□□□□ 0.64
LIG1-202ENST00000427526 PPRC1Q5VV67 1664 aaKnown RBP19.06■□□□□ 0.64
LIG1-202ENST00000427526 TMF1P82094 1093 aa19.06■□□□□ 0.64
LIG1-202ENST00000427526 CEP152O94986 1710 aa19.06■□□□□ 0.64
LIG1-202ENST00000427526 RCAN3Q9UKA8 241 aa19.06■□□□□ 0.64
LIG1-202ENST00000427526 LMTK2Q8IWU2 1503 aa19.05■□□□□ 0.64
LIG1-202ENST00000427526 CC2D1BQ5T0F9 858 aaKnown RBP19.05■□□□□ 0.64
LIG1-202ENST00000427526 BLMP54132 1417 aaPredicted RBP19.04■□□□□ 0.64
LIG1-202ENST00000427526 YEATS2Q9ULM3 1422 aa19.04■□□□□ 0.64
LIG1-202ENST00000427526 NPATQ14207 1427 aa19.03■□□□□ 0.64
LIG1-202ENST00000427526 MADDQ8WXG6 1647 aa19.03■□□□□ 0.64
LIG1-202ENST00000427526 CHGAP10645 457 aaKnown RBP19.03■□□□□ 0.64
LIG1-202ENST00000427526 STAC3Q96MF2 364 aa19.03■□□□□ 0.64
LIG1-202ENST00000427526 GLI2P10070 1586 aa19.03■□□□□ 0.64
LIG1-202ENST00000427526 SALL2Q9Y467 1007 aaPredicted RBP19.02■□□□□ 0.64
LIG1-202ENST00000427526 ADGRF5Q8IZF2 1346 aa19.01■□□□□ 0.63
LIG1-202ENST00000427526 DIP2CQ9Y2E4 1556 aa19.01■□□□□ 0.63
LIG1-202ENST00000427526 EXOC6Q8TAG9 804 aa19■□□□□ 0.63
LIG1-202ENST00000427526 CDCA7LQ96GN5 454 aa19■□□□□ 0.63
LIG1-202ENST00000427526 RICTORQ6R327 1708 aa19■□□□□ 0.63
LIG1-202ENST00000427526 IQGAP1P46940 1657 aa18.99■□□□□ 0.63
LIG1-202ENST00000427526 CFAP70Q5T0N1 1121 aa18.99■□□□□ 0.63
LIG1-202ENST00000427526 ABCC3O15438 1527 aa18.98■□□□□ 0.63
LIG1-202ENST00000427526 CFAP65Q6ZU64 1925 aaKnown RBP18.98■□□□□ 0.63
LIG1-202ENST00000427526 DIP2BQ9P265 1576 aa18.98■□□□□ 0.63
LIG1-202ENST00000427526 NOP58Q9Y2X3 529 aaKnown RBP18.95■□□□□ 0.62
LIG1-202ENST00000427526 NEURL4Q96JN8 1562 aa18.94■□□□□ 0.62
LIG1-202ENST00000427526 SCAF11Q99590 1463 aaKnown RBP18.93■□□□□ 0.62
LIG1-202ENST00000427526 KIF1BO60333 1816 aa18.93■□□□□ 0.62
LIG1-202ENST00000427526 MROH2AA6NES4 1674 aa18.93■□□□□ 0.62
LIG1-202ENST00000427526 TSPOAP1O95153 1857 aa18.93■□□□□ 0.62
LIG1-202ENST00000427526 NOS1P29475 1434 aa18.92■□□□□ 0.62
LIG1-202ENST00000427526 PAK3O75914 559 aaPredicted RBP18.92■□□□□ 0.62
LIG1-202ENST00000427526 MYOM2P54296 1465 aa18.92■□□□□ 0.62
LIG1-202ENST00000427526 AMER1Q5JTC6 1135 aaPredicted RBP18.92■□□□□ 0.62
LIG1-202ENST00000427526 ADAMTS8Q9UP79 889 aa18.92■□□□□ 0.62
LIG1-202ENST00000427526 IPO9Q96P70 1041 aaKnown RBP18.91■□□□□ 0.62
LIG1-202ENST00000427526 SYNMO15061 1565 aa18.91■□□□□ 0.62
LIG1-202ENST00000427526 ADGRB3O60242 1522 aa18.9■□□□□ 0.62
LIG1-202ENST00000427526 PPP2R1AP30153 589 aa18.9■□□□□ 0.62
LIG1-202ENST00000427526 KNSTRNQ9Y448 316 aa18.9■□□□□ 0.62
LIG1-202ENST00000427526 TCERG1O14776 1098 aaKnown RBP18.89■□□□□ 0.61
LIG1-202ENST00000427526 ANP32AP39687 249 aaKnown RBP18.89■□□□□ 0.61
LIG1-202ENST00000427526 CDCA8Q53HL2 280 aa18.89■□□□□ 0.61
LIG1-202ENST00000427526 CAMSAP1Q5T5Y3 1602 aa18.89■□□□□ 0.61
LIG1-202ENST00000427526 NUTM2DQ5VT03 806 aaPredicted RBP18.88■□□□□ 0.61
LIG1-202ENST00000427526 SIGLEC1Q9BZZ2 1709 aa18.87■□□□□ 0.61
LIG1-202ENST00000427526 IDI1Q13907 227 aa18.87■□□□□ 0.61
LIG1-202ENST00000427526 PLIN1O60240 522 aa18.87■□□□□ 0.61
LIG1-202ENST00000427526 KIAA1210Q9ULL0 1709 aa18.86■□□□□ 0.61
LIG1-202ENST00000427526 NRXN1Q9ULB1 1477 aa18.86■□□□□ 0.61
LIG1-202ENST00000427526 MYOM1P52179 1685 aa18.86■□□□□ 0.61
LIG1-202ENST00000427526 NPC1L1Q9UHC9 1359 aa18.85■□□□□ 0.61
LIG1-202ENST00000427526 ASXL1Q8IXJ9 1541 aa18.85■□□□□ 0.61
LIG1-202ENST00000427526 IFT172Q9UG01 1749 aa18.85■□□□□ 0.61
LIG1-202ENST00000427526 EIF3AQ14152 1382 aaKnown RBP18.85■□□□□ 0.61
LIG1-202ENST00000427526 ARHGAP31Q2M1Z3 1444 aa18.84■□□□□ 0.61
LIG1-202ENST00000427526 ZNF521Q96K83 1311 aa18.84■□□□□ 0.61
LIG1-202ENST00000427526 PLEKHH1Q9ULM0 1364 aa18.84■□□□□ 0.61
LIG1-202ENST00000427526 FBXO31Q5XUX0 539 aaPredicted RBP18.84■□□□□ 0.61
LIG1-202ENST00000427526 PIK3C2GO75747 1445 aa18.83■□□□□ 0.61
LIG1-202ENST00000427526 MS4A1P11836 297 aa18.83■□□□□ 0.61
LIG1-202ENST00000427526 TMEM132EQ6IEE7 984 aa18.83■□□□□ 0.61
LIG1-202ENST00000427526 C14orf93Q9H972 538 aaKnown RBP18.83■□□□□ 0.6
LIG1-202ENST00000427526 RPGRIP1LQ68CZ1 1315 aa18.83■□□□□ 0.6
LIG1-202ENST00000427526 CRBNQ96SW2 442 aa18.82■□□□□ 0.6
LIG1-202ENST00000427526 SENP3Q9H4L4 574 aaPredicted RBP18.82■□□□□ 0.6
LIG1-202ENST00000427526 PDE4AP27815 886 aa18.81■□□□□ 0.6
LIG1-202ENST00000427526 WDR43Q15061 677 aaKnown RBP eCLIP18.81■□□□□ 0.62e-6■■■■■ 54.5
LIG1-202ENST00000427526 DUSP27Q5VZP5 1158 aa18.81■□□□□ 0.6
LIG1-202ENST00000427526 TRAK1Q9UPV9 953 aa18.81■□□□□ 0.6
LIG1-202ENST00000427526 BACH2Q9BYV9 841 aa18.81■□□□□ 0.6
LIG1-202ENST00000427526 MLECQ14165 292 aa18.8■□□□□ 0.6
LIG1-202ENST00000427526 ANO8Q9HCE9 1232 aaPredicted RBP18.8■□□□□ 0.6
LIG1-202ENST00000427526 ZBTB47Q9UFB7 747 aaPredicted RBP18.8■□□□□ 0.6
LIG1-202ENST00000427526 SLC52A1Q9NWF4 448 aa18.79■□□□□ 0.6
LIG1-202ENST00000427526 KDM5AP29375 1690 aaKnown RBP18.79■□□□□ 0.6
LIG1-202ENST00000427526 PPLO60437 1756 aa18.78■□□□□ 0.6
LIG1-202ENST00000427526 PIK3C2BO00750 1634 aa18.78■□□□□ 0.6
LIG1-202ENST00000427526 C20orf194Q5TEA3 1177 aa18.78■□□□□ 0.6
LIG1-202ENST00000427526 VGFO15240 615 aaPredicted RBP18.77■□□□□ 0.6
LIG1-202ENST00000427526 ZC3H13Q5T200 1668 aaKnown RBP18.77■□□□□ 0.6
LIG1-202ENST00000427526 SLC24A1O60721 1099 aa18.76■□□□□ 0.59
LIG1-202ENST00000427526 ERVK-7P63135 1459 aa18.76■□□□□ 0.59
LIG1-202ENST00000427526 GOLGA2Q08379 1002 aa18.76■□□□□ 0.59
LIG1-202ENST00000427526 CENPJQ9HC77 1338 aaPredicted RBP18.75■□□□□ 0.59
LIG1-202ENST00000427526 TRMT2AQ8IZ69 625 aaKnown RBP18.74■□□□□ 0.59
LIG1-202ENST00000427526 KIF13AQ9H1H9 1805 aa18.74■□□□□ 0.59
LIG1-202ENST00000427526 SLFN5Q08AF3 891 aa18.74■□□□□ 0.59
LIG1-202ENST00000427526 KDM2BQ8NHM5 1336 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms