RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 NRXN1Q9ULB1 1477 aa36.74■■■■□ 3.47
LDB1-202ENST00000425280 PPLO60437 1756 aa36.72■■■■□ 3.47
LDB1-202ENST00000425280 TESK2Q96S53 571 aa36.69■■■■□ 3.46
LDB1-202ENST00000425280 CLTCQ00610 1675 aaKnown RBP36.66■■■■□ 3.46
LDB1-202ENST00000425280 RPGRIP1LQ68CZ1 1315 aa36.66■■■■□ 3.46
LDB1-202ENST00000425280 SCAF11Q99590 1463 aaKnown RBP36.66■■■■□ 3.46
LDB1-202ENST00000425280 SLC52A1Q9NWF4 448 aa36.65■■■■□ 3.46
LDB1-202ENST00000425280 IDI1Q13907 227 aa36.64■■■■□ 3.46
LDB1-202ENST00000425280 CFAP70Q5T0N1 1121 aa36.63■■■■□ 3.46
LDB1-202ENST00000425280 ERVK-7P63135 1459 aa36.61■■■■□ 3.45
LDB1-202ENST00000425280 PRKRIP1Q9H875 184 aaPredicted RBP36.61■■■■□ 3.45
LDB1-202ENST00000425280 MLECQ14165 292 aa36.6■■■■□ 3.45
LDB1-202ENST00000425280 FBXO31Q5XUX0 539 aaPredicted RBP36.6■■■■□ 3.45
LDB1-202ENST00000425280 DISP3Q9P2K9 1392 aa36.59■■■■□ 3.45
LDB1-202ENST00000425280 PIK3C2GO75747 1445 aa36.58■■■■□ 3.45
LDB1-202ENST00000425280 NEXMIFQ5QGS0 1516 aa36.57■■■■□ 3.44
LDB1-202ENST00000425280 TMEM131LA2VDJ0 1609 aa36.53■■■■□ 3.44
LDB1-202ENST00000425280 TMF1P82094 1093 aa36.53■■■■□ 3.44
LDB1-202ENST00000425280 MYO5BQ9ULV0 1848 aa36.52■■■■□ 3.44
LDB1-202ENST00000425280 SETBP1Q9Y6X0 1596 aa36.52■■■■□ 3.44
LDB1-202ENST00000425280 EIF3AQ14152 1382 aaKnown RBP36.51■■■■□ 3.44
LDB1-202ENST00000425280 SPATA31D1Q6ZQQ2 1576 aa36.49■■■■□ 3.43
LDB1-202ENST00000425280 C14orf93Q9H972 538 aaKnown RBP36.49■■■■□ 3.43
LDB1-202ENST00000425280 TRHP20396 242 aaPredicted RBP36.48■■■■□ 3.43
LDB1-202ENST00000425280 VGFO15240 615 aaPredicted RBP36.46■■■■□ 3.43
LDB1-202ENST00000425280 SCAF1Q9H7N4 1312 aaKnown RBP36.44■■■■□ 3.42
LDB1-202ENST00000425280 ZFYVE9O95405 1425 aa36.43■■■■□ 3.42
LDB1-202ENST00000425280 NUTM2DQ5VT03 806 aaPredicted RBP36.43■■■■□ 3.42
LDB1-202ENST00000425280 ADGRB1O14514 1584 aa36.42■■■■□ 3.42
LDB1-202ENST00000425280 ESF1Q9H501 851 aaKnown RBP36.41■■■■□ 3.42
LDB1-202ENST00000425280 ZMYM3Q14202 1370 aa36.39■■■■□ 3.42
LDB1-202ENST00000425280 CCDC184Q52MB2 194 aa36.39■■■■□ 3.42
LDB1-202ENST00000425280 MYO3AQ8NEV4 1616 aa36.38■■■■□ 3.41
LDB1-202ENST00000425280 CDCA8Q53HL2 280 aa36.32■■■■□ 3.4
LDB1-202ENST00000425280 CNGB1Q14028 1251 aaPredicted RBP36.31■■■■□ 3.4
LDB1-202ENST00000425280 TMEM132EQ6IEE7 984 aa36.31■■■■□ 3.4
LDB1-202ENST00000425280 STAG3Q9UJ98 1225 aa36.3■■■■□ 3.4
LDB1-202ENST00000425280 PER1O15534 1290 aaPredicted RBP36.29■■■■□ 3.4
LDB1-202ENST00000425280 MRS2Q9HD23 443 aa36.29■■■■□ 3.4
LDB1-202ENST00000425280 A2ML1A8K2U0 1454 aa36.29■■■■□ 3.4
LDB1-202ENST00000425280 SLC24A1O60721 1099 aa36.28■■■■□ 3.4
LDB1-202ENST00000425280 TRAK1Q9UPV9 953 aa36.27■■■■□ 3.4
LDB1-202ENST00000425280 SBNO2Q9Y2G9 1366 aa36.27■■■■□ 3.4
LDB1-202ENST00000425280 DNAJC5Q9H3Z4 198 aa36.27■■■■□ 3.4
LDB1-202ENST00000425280 PANK3Q9H999 370 aa36.27■■■■□ 3.4
LDB1-202ENST00000425280 GTF3C3Q9Y5Q9 886 aa36.25■■■■□ 3.39
LDB1-202ENST00000425280 CENPJQ9HC77 1338 aaPredicted RBP36.25■■■■□ 3.39
LDB1-202ENST00000425280 KDM5AP29375 1690 aaKnown RBP36.24■■■■□ 3.39
LDB1-202ENST00000425280 KTN1Q86UP2 1357 aaKnown RBP36.24■■■■□ 3.39
LDB1-202ENST00000425280 MYOM1P52179 1685 aa36.21■■■■□ 3.39
LDB1-202ENST00000425280 QRICH2Q9H0J4 1663 aa36.21■■■■□ 3.39
LDB1-202ENST00000425280 RALBP1Q15311 655 aa36.2■■■■□ 3.39
LDB1-202ENST00000425280 ASXL1Q8IXJ9 1541 aa36.2■■■■□ 3.39
LDB1-202ENST00000425280 TNRQ92752 1358 aa36.19■■■■□ 3.38
LDB1-202ENST00000425280 ARHGEF28Q8N1W1 1705 aaKnown RBP36.17■■■■□ 3.38
LDB1-202ENST00000425280 RIMS2Q9UQ26 1411 aa36.16■■■■□ 3.38
LDB1-202ENST00000425280 PARD3Q8TEW0 1356 aa36.15■■■■□ 3.38
LDB1-202ENST00000425280 SENP3Q9H4L4 574 aaPredicted RBP36.14■■■■□ 3.38
LDB1-202ENST00000425280 MYBBP1AQ9BQG0 1328 aaKnown RBP36.13■■■■□ 3.37
LDB1-202ENST00000425280 ALKQ9UM73 1620 aa36.12■■■■□ 3.37
LDB1-202ENST00000425280 FAM9BQ8IZU0 186 aa36.12■■■■□ 3.37
LDB1-202ENST00000425280 HNRNPUQ00839 825 aaKnown RBP eCLIP36.09■■■■□ 3.37
LDB1-202ENST00000425280 FER1L4A9Z1Z3 1794 aa36.06■■■■□ 3.36
LDB1-202ENST00000425280 BRD4O60885 1362 aaPredicted RBP36.05■■■■□ 3.36
LDB1-202ENST00000425280 CC2D1BQ5T0F9 858 aaKnown RBP36.04■■■■□ 3.36
LDB1-202ENST00000425280 YTHDC2Q9H6S0 1430 aaKnown RBP36.04■■■■□ 3.36
LDB1-202ENST00000425280 UBR1Q8IWV7 1749 aa36.03■■■■□ 3.36
LDB1-202ENST00000425280 C3P01024 1663 aa36.03■■■■□ 3.36
LDB1-202ENST00000425280 STK26Q9P289 416 aa36.03■■■■□ 3.36
LDB1-202ENST00000425280 KNSTRNQ9Y448 316 aa36.03■■■■□ 3.36
LDB1-202ENST00000425280 CEBPAP49715 358 aaPredicted RBP36.02■■■■□ 3.36
LDB1-202ENST00000425280 ABCF1Q8NE71 845 aaKnown RBP eCLIP36.02■■■■□ 3.36
LDB1-202ENST00000425280 TMC1Q8TDI8 760 aa36.02■■■■□ 3.36
LDB1-202ENST00000425280 PTPRMP28827 1452 aa36■■■■□ 3.35
LDB1-202ENST00000425280 SETD1AO15047 1707 aaKnown RBP36■■■■□ 3.35
LDB1-202ENST00000425280 NLRP1Q9C000 1473 aa35.97■■■■□ 3.35
LDB1-202ENST00000425280 TULP4Q9NRJ4 1543 aa35.97■■■■□ 3.35
LDB1-202ENST00000425280 NRXN3Q9Y4C0 1643 aa35.97■■■■□ 3.35
LDB1-202ENST00000425280 NLRP13Q86W25 1043 aa35.97■■■■□ 3.35
LDB1-202ENST00000425280 AMER1Q5JTC6 1135 aaPredicted RBP35.96■■■■□ 3.35
LDB1-202ENST00000425280 PNISRQ8TF01 805 aaKnown RBP35.96■■■■□ 3.35
LDB1-202ENST00000425280 EVC2Q86UK5 1308 aa35.94■■■■□ 3.34
LDB1-202ENST00000425280 TMEM2Q9UHN6 1383 aa35.94■■■■□ 3.34
LDB1-202ENST00000425280 HDGFP51858 240 aaKnown RBP35.93■■■■□ 3.34
LDB1-202ENST00000425280 PUS7Q96PZ0 661 aaKnown RBP35.92■■■■□ 3.34
LDB1-202ENST00000425280 SAFB2Q14151 953 aaKnown RBP eCLIP35.91■■■■□ 3.34
LDB1-202ENST00000425280 NPC1L1Q9UHC9 1359 aa35.91■■■■□ 3.34
LDB1-202ENST00000425280 PRAM1Q96QH2 718 aa35.89■■■■□ 3.34
LDB1-202ENST00000425280 CARD14Q9BXL6 1004 aa35.88■■■■□ 3.33
LDB1-202ENST00000425280 LRPPRCP42704 1394 aaKnown RBP35.87■■■■□ 3.33
LDB1-202ENST00000425280 DLC1Q96QB1 1528 aa35.87■■■■□ 3.33
LDB1-202ENST00000425280 POGKQ9P215 609 aa35.85■■■■□ 3.33
LDB1-202ENST00000425280 SLC12A5Q9H2X9 1139 aa35.84■■■■□ 3.33
LDB1-202ENST00000425280 PLPPR3Q6T4P5 718 aa35.83■■■■□ 3.33
LDB1-202ENST00000425280 ZBED9Q6R2W3 1325 aa35.82■■■■□ 3.32
LDB1-202ENST00000425280 METP08581 1390 aa35.81■■■■□ 3.32
LDB1-202ENST00000425280 ABCC11Q96J66 1382 aa35.81■■■■□ 3.32
LDB1-202ENST00000425280 CABP2Q9NPB3 220 aa35.8■■■■□ 3.32
LDB1-202ENST00000425280 MINK1Q8N4C8 1332 aaPredicted RBP35.8■■■■□ 3.32
LDB1-202ENST00000425280 PPP2R1AP30153 589 aa35.76■■■■□ 3.32
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms