RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ZKSCAN1P17029 563 aaPredicted RBP8.37□□□□□ -1.07
SCN1A-204ENST00000423058 AK7Q96M32 723 aa8.36□□□□□ -1.07
SCN1A-204ENST00000423058 XBP1P17861 261 aa8.36□□□□□ -1.07
SCN1A-204ENST00000423058 ATF3P18847 181 aa8.36□□□□□ -1.07
SCN1A-204ENST00000423058 NFXL1Q6ZNB6 911 aa8.36□□□□□ -1.07
SCN1A-204ENST00000423058 TMEM132AQ24JP5 1023 aa8.36□□□□□ -1.07
SCN1A-204ENST00000423058 RUFY1Q96T51 708 aa8.36□□□□□ -1.07
SCN1A-204ENST00000423058 ZRSR2Q15696 482 aaKnown RBP8.36□□□□□ -1.07
SCN1A-204ENST00000423058 EVC2Q86UK5 1308 aa8.35□□□□□ -1.07
SCN1A-204ENST00000423058 CGNL1Q0VF96 1302 aa8.35□□□□□ -1.07
SCN1A-204ENST00000423058 HSP90AB2PQ58FF8 381 aa8.34□□□□□ -1.07
SCN1A-204ENST00000423058 TEX35Q5T0J7 233 aa8.34□□□□□ -1.07
SCN1A-204ENST00000423058 SIN3AQ96ST3 1273 aa8.34□□□□□ -1.07
SCN1A-204ENST00000423058 SLC3A2P08195 630 aaKnown RBP8.34□□□□□ -1.07
SCN1A-204ENST00000423058 SKOR2Q2VWA4 1001 aaPredicted RBP8.34□□□□□ -1.07
SCN1A-204ENST00000423058 NOL8Q76FK4 1167 aaKnown RBP8.34□□□□□ -1.07
SCN1A-204ENST00000423058 IFIT2P09913 472 aaKnown RBP8.34□□□□□ -1.07
SCN1A-204ENST00000423058 ZFYVE27Q5T4F4 411 aa8.34□□□□□ -1.07
SCN1A-204ENST00000423058 VGFO15240 615 aaPredicted RBP8.33□□□□□ -1.08
SCN1A-204ENST00000423058 REC8O95072 547 aa8.33□□□□□ -1.08
SCN1A-204ENST00000423058 NAP1L1P55209 391 aaKnown RBP8.33□□□□□ -1.08
SCN1A-204ENST00000423058 SLKQ9H2G2 1235 aaPredicted RBP8.33□□□□□ -1.08
SCN1A-204ENST00000423058 PATL2C9JE40 543 aaKnown RBP8.33□□□□□ -1.08
SCN1A-204ENST00000423058 IKQ13123 557 aaPredicted RBP8.33□□□□□ -1.08
SCN1A-204ENST00000423058 ACBD3Q9H3P7 528 aa8.33□□□□□ -1.08
SCN1A-204ENST00000423058 TRIM21P19474 475 aaKnown RBP8.33□□□□□ -1.08
SCN1A-204ENST00000423058 G3BP1Q13283 466 aaKnown RBP eCLIP8.32□□□□□ -1.08
SCN1A-204ENST00000423058 PDE3BQ13370 1112 aa8.32□□□□□ -1.08
SCN1A-204ENST00000423058 DCTN1Q14203 1278 aa8.32□□□□□ -1.08
SCN1A-204ENST00000423058 NGEFQ8N5V2 710 aa8.32□□□□□ -1.08
SCN1A-204ENST00000423058 OFD1O75665 1012 aa8.31□□□□□ -1.08
SCN1A-204ENST00000423058 SOGA1O94964 1423 aa8.31□□□□□ -1.08
SCN1A-204ENST00000423058 NUTM2FA1L443 756 aa8.31□□□□□ -1.08
SCN1A-204ENST00000423058 SYCP1Q15431 976 aa8.31□□□□□ -1.08
SCN1A-204ENST00000423058 HSP90AB4PQ58FF6 505 aa8.31□□□□□ -1.08
SCN1A-204ENST00000423058 SAMD1Q6SPF0 538 aaPredicted RBP8.31□□□□□ -1.08
SCN1A-204ENST00000423058 DNAI2Q9GZS0 605 aa8.31□□□□□ -1.08
SCN1A-204ENST00000423058 KIF15Q9NS87 1388 aa8.31□□□□□ -1.08
SCN1A-204ENST00000423058 HSPA5P11021 654 aaKnown RBP8.31□□□□□ -1.08
SCN1A-204ENST00000423058 RALYLQ86SE5 291 aaKnown RBP8.31□□□□□ -1.08
SCN1A-204ENST00000423058 ERC2O15083 957 aa8.31□□□□□ -1.08
SCN1A-204ENST00000423058 DESP17661 470 aa8.31□□□□□ -1.08
SCN1A-204ENST00000423058 CCDC144AA2RUR9 1427 aa8.3□□□□□ -1.08
SCN1A-204ENST00000423058 SART3Q15020 963 aaKnown RBP8.3□□□□□ -1.08
SCN1A-204ENST00000423058 ANKRD18AQ8IVF6 992 aa8.3□□□□□ -1.08
SCN1A-204ENST00000423058 NAT10Q9H0A0 1025 aaKnown RBP8.3□□□□□ -1.08
SCN1A-204ENST00000423058 CCDC27Q2M243 656 aa8.3□□□□□ -1.08
SCN1A-204ENST00000423058 ANKRD45Q5TZF3 282 aa8.3□□□□□ -1.08
SCN1A-204ENST00000423058 MPHOSPH9Q99550 1183 aa8.3□□□□□ -1.08
SCN1A-204ENST00000423058 ANO2Q9NQ90 1003 aa8.3□□□□□ -1.08
SCN1A-204ENST00000423058 KIF6Q6ZMV9 814 aa8.3□□□□□ -1.08
SCN1A-204ENST00000423058 OLFM4Q6UX06 510 aa8.29□□□□□ -1.08
SCN1A-204ENST00000423058 RAPGEF4Q8WZA2 1011 aa8.29□□□□□ -1.08
SCN1A-204ENST00000423058 CHMP5Q9NZZ3 219 aa8.29□□□□□ -1.08
SCN1A-204ENST00000423058 MIA2Q96PC5 1412 aa8.29□□□□□ -1.08
SCN1A-204ENST00000423058 HOMER1Q86YM7 354 aa8.29□□□□□ -1.08
SCN1A-204ENST00000423058 ARID3AQ99856 593 aa8.29□□□□□ -1.08
SCN1A-204ENST00000423058 NINLQ9Y2I6 1382 aa8.29□□□□□ -1.08
SCN1A-204ENST00000423058 NLRP13Q86W25 1043 aa8.29□□□□□ -1.08
SCN1A-204ENST00000423058 EIF2S2P20042 333 aaKnown RBP8.29□□□□□ -1.08
SCN1A-204ENST00000423058 SMG6Q86US8 1419 aaKnown RBP8.28□□□□□ -1.08
SCN1A-204ENST00000423058 WDHD1O75717 1129 aaPredicted RBP8.28□□□□□ -1.08
SCN1A-204ENST00000423058 NOM1Q5C9Z4 860 aaKnown RBP8.28□□□□□ -1.08
SCN1A-204ENST00000423058 CDK5RAP3Q96JB5 506 aa8.28□□□□□ -1.08
SCN1A-204ENST00000423058 TXLNAP40222 546 aa8.28□□□□□ -1.08
SCN1A-204ENST00000423058 SASS6Q6UVJ0 657 aa8.28□□□□□ -1.08
SCN1A-204ENST00000423058 TBC1D2BQ9UPU7 963 aa8.28□□□□□ -1.08
SCN1A-204ENST00000423058 CCDC146Q8IYE0 955 aa8.27□□□□□ -1.08
SCN1A-204ENST00000423058 CCDC191Q8NCU4 936 aa8.27□□□□□ -1.08
SCN1A-204ENST00000423058 TRAK1Q9UPV9 953 aa8.27□□□□□ -1.09
SCN1A-204ENST00000423058 NUTM2DQ5VT03 806 aaPredicted RBP8.27□□□□□ -1.09
SCN1A-204ENST00000423058 BICD2Q8TD16 824 aa8.27□□□□□ -1.09
SCN1A-204ENST00000423058 DEKP35659 375 aaKnown RBP8.27□□□□□ -1.09
SCN1A-204ENST00000423058 GNL3LQ9NVN8 582 aaKnown RBP8.27□□□□□ -1.09
SCN1A-204ENST00000423058 FOXD4L5Q5VV16 416 aaPredicted RBP8.27□□□□□ -1.09
SCN1A-204ENST00000423058 FOXD4L4Q8WXT5 416 aaPredicted RBP8.27□□□□□ -1.09
SCN1A-204ENST00000423058 ZKSCAN2Q63HK3 967 aa8.27□□□□□ -1.09
SCN1A-204ENST00000423058 ARGLU1Q9NWB6 273 aaPredicted RBP8.27□□□□□ -1.09
SCN1A-204ENST00000423058 ERLIN2O94905 339 aa8.26□□□□□ -1.09
SCN1A-204ENST00000423058 HNRNPMP52272 730 aaKnown RBP eCLIP8.26□□□□□ -1.09
SCN1A-204ENST00000423058 RIC3Q7Z5B4 369 aa8.26□□□□□ -1.09
SCN1A-204ENST00000423058 FOXD4L1Q9NU39 408 aa8.26□□□□□ -1.09
SCN1A-204ENST00000423058 E9PSI1 815 aa8.26□□□□□ -1.09
SCN1A-204ENST00000423058 CLUAP1Q96AJ1 413 aa8.26□□□□□ -1.09
SCN1A-204ENST00000423058 CENPQQ7L2Z9 268 aaPredicted RBP8.26□□□□□ -1.09
SCN1A-204ENST00000423058 TXLNBQ8N3L3 684 aa8.26□□□□□ -1.09
SCN1A-204ENST00000423058 MAP7D2Q96T17 732 aa8.26□□□□□ -1.09
SCN1A-204ENST00000423058 PPP1R1BQ9UD71 204 aaPredicted RBP8.26□□□□□ -1.09
SCN1A-204ENST00000423058 MAGEC2Q9UBF1 373 aaPredicted RBP8.26□□□□□ -1.09
SCN1A-204ENST00000423058 DDX49Q9Y6V7 483 aaKnown RBP8.26□□□□□ -1.09
SCN1A-204ENST00000423058 ABCC8Q09428 1581 aa8.25□□□□□ -1.09
SCN1A-204ENST00000423058 FYB1O15117 783 aa8.25□□□□□ -1.09
SCN1A-204ENST00000423058 HSP90B2PQ58FF3 399 aa8.25□□□□□ -1.09
SCN1A-204ENST00000423058 ZNF592Q92610 1267 aa8.25□□□□□ -1.09
SCN1A-204ENST00000423058 ERCC4Q92889 916 aaPredicted RBP8.25□□□□□ -1.09
SCN1A-204ENST00000423058 LUC7LQ9NQ29 371 aaKnown RBP8.25□□□□□ -1.09
SCN1A-204ENST00000423058 PSMA5P28066 241 aa8.25□□□□□ -1.09
SCN1A-204ENST00000423058 CCDC73Q6ZRK6 1079 aa8.25□□□□□ -1.09
SCN1A-204ENST00000423058 DDX19BQ9UMR2 479 aa8.25□□□□□ -1.09
SCN1A-204ENST00000423058 SEPT7Q16181 437 aaKnown RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms