RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.46□□□□□ -0.09
LIMS1-207ENST00000422797 SHROOM2Q13796 1616 aa14.46□□□□□ -0.09
LIMS1-207ENST00000422797 PANK3Q9H999 370 aa14.46□□□□□ -0.1
LIMS1-207ENST00000422797 MADDQ8WXG6 1647 aa14.45□□□□□ -0.1
LIMS1-207ENST00000422797 ABCC2Q92887 1545 aa14.45□□□□□ -0.1
LIMS1-207ENST00000422797 TRPM2O94759 1503 aa14.44□□□□□ -0.1
LIMS1-207ENST00000422797 WDR7Q9Y4E6 1490 aa14.44□□□□□ -0.1
LIMS1-207ENST00000422797 NBPF1Q3BBV0 1214 aa14.44□□□□□ -0.1
LIMS1-207ENST00000422797 KIAA1210Q9ULL0 1709 aa14.44□□□□□ -0.1
LIMS1-207ENST00000422797 SCAF11Q99590 1463 aaKnown RBP14.43□□□□□ -0.1
LIMS1-207ENST00000422797 WDR43Q15061 677 aaKnown RBP eCLIP14.43□□□□□ -0.1
LIMS1-207ENST00000422797 ASXL1Q8IXJ9 1541 aa14.43□□□□□ -0.1
LIMS1-207ENST00000422797 ARAP3Q8WWN8 1544 aa14.43□□□□□ -0.1
LIMS1-207ENST00000422797 SPHKAPQ2M3C7 1700 aa14.42□□□□□ -0.1
LIMS1-207ENST00000422797 RTEL1-TNFRSF6BF6WH68 1400 aa14.42□□□□□ -0.1
LIMS1-207ENST00000422797 KNSTRNQ9Y448 316 aa14.42□□□□□ -0.1
LIMS1-207ENST00000422797 NINLQ9Y2I6 1382 aa14.42□□□□□ -0.1
LIMS1-207ENST00000422797 KDM2BQ8NHM5 1336 aa14.42□□□□□ -0.1
LIMS1-207ENST00000422797 CC2D1BQ5T0F9 858 aaKnown RBP14.41□□□□□ -0.1
LIMS1-207ENST00000422797 CRBNQ96SW2 442 aa14.41□□□□□ -0.1
LIMS1-207ENST00000422797 RGL3Q3MIN7 710 aa14.41□□□□□ -0.1
LIMS1-207ENST00000422797 NPM2Q86SE8 214 aaKnown RBP14.41□□□□□ -0.1
LIMS1-207ENST00000422797 CEP152O94986 1710 aa14.4□□□□□ -0.1
LIMS1-207ENST00000422797 PLCH2O75038 1416 aa14.4□□□□□ -0.1
LIMS1-207ENST00000422797 ABCC1P33527 1531 aa14.4□□□□□ -0.1
LIMS1-207ENST00000422797 C1QBPQ07021 282 aaKnown RBP14.4□□□□□ -0.1
LIMS1-207ENST00000422797 CDCA7LQ96GN5 454 aa14.4□□□□□ -0.1
LIMS1-207ENST00000422797 ZNF521Q96K83 1311 aa14.39□□□□□ -0.11
LIMS1-207ENST00000422797 PTPRTO14522 1441 aa14.39□□□□□ -0.11
LIMS1-207ENST00000422797 NEFMP07197 916 aa14.39□□□□□ -0.11
LIMS1-207ENST00000422797 GOLGA2Q08379 1002 aa14.39□□□□□ -0.11
LIMS1-207ENST00000422797 PPP2R1AP30153 589 aa14.38□□□□□ -0.11
LIMS1-207ENST00000422797 DAXXQ9UER7 740 aaPredicted RBP14.38□□□□□ -0.11
LIMS1-207ENST00000422797 DEPDC5O75140 1603 aa14.37□□□□□ -0.11
LIMS1-207ENST00000422797 FAM161AQ3B820 660 aa14.37□□□□□ -0.11
LIMS1-207ENST00000422797 UHRF1BP1LA0JNW5 1464 aa14.37□□□□□ -0.11
LIMS1-207ENST00000422797 KDM5AP29375 1690 aaKnown RBP14.36□□□□□ -0.11
LIMS1-207ENST00000422797 EFCAB2Q5VUJ9 269 aa14.36□□□□□ -0.11
LIMS1-207ENST00000422797 DUSP27Q5VZP5 1158 aa14.36□□□□□ -0.11
LIMS1-207ENST00000422797 SALL2Q9Y467 1007 aaPredicted RBP14.36□□□□□ -0.11
LIMS1-207ENST00000422797 TET3O43151 1660 aa14.36□□□□□ -0.11
LIMS1-207ENST00000422797 AMER1Q5JTC6 1135 aaPredicted RBP14.36□□□□□ -0.11
LIMS1-207ENST00000422797 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.36□□□□□ -0.11
LIMS1-207ENST00000422797 ADAMTS8Q9UP79 889 aa14.36□□□□□ -0.11
LIMS1-207ENST00000422797 AAMPQ13685 434 aa14.35□□□□□ -0.11
LIMS1-207ENST00000422797 NKTRP30414 1462 aaKnown RBP14.35□□□□□ -0.11
LIMS1-207ENST00000422797 MYOM2P54296 1465 aa14.34□□□□□ -0.11
LIMS1-207ENST00000422797 PLEKHH1Q9ULM0 1364 aa14.33□□□□□ -0.11
LIMS1-207ENST00000422797 MYOM1P52179 1685 aa14.33□□□□□ -0.12
LIMS1-207ENST00000422797 SLFN5Q08AF3 891 aa14.33□□□□□ -0.12
LIMS1-207ENST00000422797 CYB5RLQ6IPT4 315 aa14.33□□□□□ -0.12
LIMS1-207ENST00000422797 TRMT2AQ8IZ69 625 aaKnown RBP14.33□□□□□ -0.12
LIMS1-207ENST00000422797 ZMYM3Q14202 1370 aa14.33□□□□□ -0.12
LIMS1-207ENST00000422797 KANK1Q14678 1352 aa14.33□□□□□ -0.12
LIMS1-207ENST00000422797 PLIN1O60240 522 aa14.32□□□□□ -0.12
LIMS1-207ENST00000422797 TRHP20396 242 aaPredicted RBP14.32□□□□□ -0.12
LIMS1-207ENST00000422797 VWDEQ8N2E2 1590 aa14.31□□□□□ -0.12
LIMS1-207ENST00000422797 E9PSI1 815 aa14.31□□□□□ -0.12
LIMS1-207ENST00000422797 ZFYVE16Q7Z3T8 1539 aa14.31□□□□□ -0.12
LIMS1-207ENST00000422797 SENP3-EIF4A1A0A087X0R7 540 aa14.31□□□□□ -0.12
LIMS1-207ENST00000422797 SBNO2Q9Y2G9 1366 aa14.3□□□□□ -0.12
LIMS1-207ENST00000422797 CLTCL1P53675 1640 aa14.3□□□□□ -0.12
LIMS1-207ENST00000422797 CHD1O14646 1710 aa14.3□□□□□ -0.12
LIMS1-207ENST00000422797 LAS1LQ9Y4W2 734 aaKnown RBP14.3□□□□□ -0.12
LIMS1-207ENST00000422797 CGNL1Q0VF96 1302 aa14.3□□□□□ -0.12
LIMS1-207ENST00000422797 MYO3AQ8NEV4 1616 aa14.29□□□□□ -0.12
LIMS1-207ENST00000422797 ZCCHC11Q5TAX3 1644 aaKnown RBP14.28□□□□□ -0.12
LIMS1-207ENST00000422797 MAPK8IP3Q9UPT6 1336 aa14.28□□□□□ -0.12
LIMS1-207ENST00000422797 PDE3AQ14432 1141 aa14.28□□□□□ -0.12
LIMS1-207ENST00000422797 SPAG9O60271 1321 aaKnown RBP14.27□□□□□ -0.12
LIMS1-207ENST00000422797 MAP3K4Q9Y6R4 1608 aa14.27□□□□□ -0.13
LIMS1-207ENST00000422797 VIRMAQ69YN4 1812 aaKnown RBP14.26□□□□□ -0.13
LIMS1-207ENST00000422797 GSE1Q14687 1217 aa14.26□□□□□ -0.13
LIMS1-207ENST00000422797 NCBP3Q53F19 620 aaKnown RBP14.26□□□□□ -0.13
LIMS1-207ENST00000422797 INO80Q9ULG1 1556 aaPredicted RBP14.26□□□□□ -0.13
LIMS1-207ENST00000422797 POLR3AO14802 1390 aaPredicted RBP14.26□□□□□ -0.13
LIMS1-207ENST00000422797 C8orf34Q49A92 452 aa14.25□□□□□ -0.13
LIMS1-207ENST00000422797 C20orf194Q5TEA3 1177 aa14.25□□□□□ -0.13
LIMS1-207ENST00000422797 TRAPPC8Q9Y2L5 1435 aa14.25□□□□□ -0.13
LIMS1-207ENST00000422797 SETBP1Q9Y6X0 1596 aa14.24□□□□□ -0.13
LIMS1-207ENST00000422797 NFKBIBQ15653 356 aa14.24□□□□□ -0.13
LIMS1-207ENST00000422797 ATP7AQ04656 1500 aa14.23□□□□□ -0.13
LIMS1-207ENST00000422797 ERVK-7P63135 1459 aa14.23□□□□□ -0.13
LIMS1-207ENST00000422797 NRXN1Q9ULB1 1477 aa14.23□□□□□ -0.13
LIMS1-207ENST00000422797 USP32Q8NFA0 1604 aa14.22□□□□□ -0.13
LIMS1-207ENST00000422797 ABCA6Q8N139 1617 aa14.22□□□□□ -0.13
LIMS1-207ENST00000422797 BECN1Q14457 450 aa14.21□□□□□ -0.13
LIMS1-207ENST00000422797 IFT172Q9UG01 1749 aa14.21□□□□□ -0.13
LIMS1-207ENST00000422797 LMTK2Q8IWU2 1503 aa14.21□□□□□ -0.13
LIMS1-207ENST00000422797 ABCA9Q8IUA7 1624 aa14.2□□□□□ -0.14
LIMS1-207ENST00000422797 CENPJQ9HC77 1338 aaPredicted RBP14.2□□□□□ -0.14
LIMS1-207ENST00000422797 EFCAB6Q5THR3 1501 aa14.2□□□□□ -0.14
LIMS1-207ENST00000422797 FANCAO15360 1455 aa14.19□□□□□ -0.14
LIMS1-207ENST00000422797 KIF1BO60333 1816 aa14.19□□□□□ -0.14
LIMS1-207ENST00000422797 PMFBP1Q8TBY8 1022 aa14.19□□□□□ -0.14
LIMS1-207ENST00000422797 APAF1O14727 1248 aa14.18□□□□□ -0.14
LIMS1-207ENST00000422797 CLUAP1Q96AJ1 413 aa14.17□□□□□ -0.14
LIMS1-207ENST00000422797 PUS7Q96PZ0 661 aaKnown RBP14.17□□□□□ -0.14
LIMS1-207ENST00000422797 ADGRL1O94910 1474 aa14.16□□□□□ -0.14
LIMS1-207ENST00000422797 NSD2O96028 1365 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms