RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 CEBPAP49715 358 aaPredicted RBP24.27■■□□□ 1.48
CCDC28B-202ENST00000421922 NLRP1Q9C000 1473 aa24.26■■□□□ 1.47
CCDC28B-202ENST00000421922 TRPM1Q7Z4N2 1603 aa24.26■■□□□ 1.47
CCDC28B-202ENST00000421922 ZNF316A6NFI3 1004 aaPredicted RBP24.25■■□□□ 1.47
CCDC28B-202ENST00000421922 KDM5AP29375 1690 aaKnown RBP24.25■■□□□ 1.47
CCDC28B-202ENST00000421922 NEXMIFQ5QGS0 1516 aa24.23■■□□□ 1.47
CCDC28B-202ENST00000421922 ROCK2O75116 1388 aaKnown RBP24.22■■□□□ 1.47
CCDC28B-202ENST00000421922 MYO3AQ8NEV4 1616 aa24.21■■□□□ 1.47
CCDC28B-202ENST00000421922 A2ML1A8K2U0 1454 aa24.2■■□□□ 1.46
CCDC28B-202ENST00000421922 UBR1Q8IWV7 1749 aa24.2■■□□□ 1.46
CCDC28B-202ENST00000421922 KIAA1210Q9ULL0 1709 aa24.2■■□□□ 1.46
CCDC28B-202ENST00000421922 VGFO15240 615 aaPredicted RBP24.19■■□□□ 1.46
CCDC28B-202ENST00000421922 HSPA2P54652 639 aa24.18■■□□□ 1.46
CCDC28B-202ENST00000421922 EIF4G2P78344 907 aaKnown RBP eCLIP24.18■■□□□ 1.46
CCDC28B-202ENST00000421922 CARD11Q9BXL7 1154 aa24.18■■□□□ 1.46
CCDC28B-202ENST00000421922 LAMC1P11047 1609 aa24.16■■□□□ 1.46
CCDC28B-202ENST00000421922 NRXN1Q9ULB1 1477 aa24.15■■□□□ 1.46
CCDC28B-202ENST00000421922 ADGRF5Q8IZF2 1346 aa24.15■■□□□ 1.46
CCDC28B-202ENST00000421922 RIMS2Q9UQ26 1411 aa24.14■■□□□ 1.45
CCDC28B-202ENST00000421922 SETD1BQ9UPS6 1966 aaKnown RBP24.13■■□□□ 1.45
CCDC28B-202ENST00000421922 HDGFP51858 240 aaKnown RBP24.13■■□□□ 1.45
CCDC28B-202ENST00000421922 ZFYVE9O95405 1425 aa24.13■■□□□ 1.45
CCDC28B-202ENST00000421922 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.12■■□□□ 1.45
CCDC28B-202ENST00000421922 NUTM2DQ5VT03 806 aaPredicted RBP24.11■■□□□ 1.45
CCDC28B-202ENST00000421922 PIK3C2GO75747 1445 aa24.11■■□□□ 1.45
CCDC28B-202ENST00000421922 CEP170BQ9Y4F5 1589 aaPredicted RBP24.11■■□□□ 1.45
CCDC28B-202ENST00000421922 USP47Q96K76 1375 aa24.11■■□□□ 1.45
CCDC28B-202ENST00000421922 ZNF142P52746 1687 aaPredicted RBP24.1■■□□□ 1.45
CCDC28B-202ENST00000421922 HSPA5P11021 654 aaKnown RBP24.1■■□□□ 1.45
CCDC28B-202ENST00000421922 GPRASP1Q5JY77 1395 aa24.09■■□□□ 1.45
CCDC28B-202ENST00000421922 TMEM2Q9UHN6 1383 aa24.07■■□□□ 1.44
CCDC28B-202ENST00000421922 NBPF1Q3BBV0 1214 aa24.07■■□□□ 1.44
CCDC28B-202ENST00000421922 CERKQ8TCT0 537 aa24.07■■□□□ 1.44
CCDC28B-202ENST00000421922 THEMISQ8N1K5 641 aaPredicted RBP24.06■■□□□ 1.44
CCDC28B-202ENST00000421922 HIRIP3Q9BW71 556 aaPredicted RBP24.06■■□□□ 1.44
CCDC28B-202ENST00000421922 SETBP1Q9Y6X0 1596 aa24.05■■□□□ 1.44
CCDC28B-202ENST00000421922 CFAP70Q5T0N1 1121 aa24.05■■□□□ 1.44
CCDC28B-202ENST00000421922 IQGAP1P46940 1657 aa24.03■■□□□ 1.44
CCDC28B-202ENST00000421922 EID1Q9Y6B2 187 aa24.03■■□□□ 1.44
CCDC28B-202ENST00000421922 EIF3AQ14152 1382 aaKnown RBP24.02■■□□□ 1.44
CCDC28B-202ENST00000421922 C14orf93Q9H972 538 aaKnown RBP24.01■■□□□ 1.43
CCDC28B-202ENST00000421922 SLIT1O75093 1534 aa24.01■■□□□ 1.43
CCDC28B-202ENST00000421922 SCAF11Q99590 1463 aaKnown RBP24.01■■□□□ 1.43
CCDC28B-202ENST00000421922 BCANQ96GW7 911 aa24■■□□□ 1.43
CCDC28B-202ENST00000421922 SENP3Q9H4L4 574 aaPredicted RBP23.98■■□□□ 1.43
CCDC28B-202ENST00000421922 ARHGAP23Q9P227 1491 aa23.98■■□□□ 1.43
CCDC28B-202ENST00000421922 ALKQ9UM73 1620 aa23.97■■□□□ 1.43
CCDC28B-202ENST00000421922 POLR1AO95602 1720 aaPredicted RBP23.97■■□□□ 1.43
CCDC28B-202ENST00000421922 TXNDC2Q86VQ3 553 aa23.96■■□□□ 1.43
CCDC28B-202ENST00000421922 ADGRB1O14514 1584 aa23.94■■□□□ 1.42
CCDC28B-202ENST00000421922 ST20-MTHFSA0A0A6YYL1 179 aa23.93■■□□□ 1.42
CCDC28B-202ENST00000421922 PLEKHG1Q9ULL1 1385 aa23.93■■□□□ 1.42
CCDC28B-202ENST00000421922 NRXN3Q9Y4C0 1643 aa23.92■■□□□ 1.42
CCDC28B-202ENST00000421922 TMEM132EQ6IEE7 984 aa23.91■■□□□ 1.42
CCDC28B-202ENST00000421922 SETD1AO15047 1707 aaKnown RBP23.9■■□□□ 1.42
CCDC28B-202ENST00000421922 LTKP29376 864 aa23.89■■□□□ 1.41
CCDC28B-202ENST00000421922 ASXL1Q8IXJ9 1541 aa23.89■■□□□ 1.41
CCDC28B-202ENST00000421922 DIEXFQ68CQ4 756 aaKnown RBP23.88■■□□□ 1.41
CCDC28B-202ENST00000421922 ILDR2Q71H61 639 aa23.88■■□□□ 1.41
CCDC28B-202ENST00000421922 ANKLE2Q86XL3 938 aa23.88■■□□□ 1.41
CCDC28B-202ENST00000421922 STRCQ7RTU9 1775 aa23.88■■□□□ 1.41
CCDC28B-202ENST00000421922 TRAK1Q9UPV9 953 aa23.87■■□□□ 1.41
CCDC28B-202ENST00000421922 ARHGEF28Q8N1W1 1705 aaKnown RBP23.87■■□□□ 1.41
CCDC28B-202ENST00000421922 DIP2AQ14689 1571 aa23.87■■□□□ 1.41
CCDC28B-202ENST00000421922 YTHDC2Q9H6S0 1430 aaKnown RBP23.86■■□□□ 1.41
CCDC28B-202ENST00000421922 QRICH2Q9H0J4 1663 aa23.84■■□□□ 1.41
CCDC28B-202ENST00000421922 CCDC7Q96M83 1385 aa23.84■■□□□ 1.41
CCDC28B-202ENST00000421922 DISP3Q9P2K9 1392 aa23.84■■□□□ 1.41
CCDC28B-202ENST00000421922 SLC24A1O60721 1099 aa23.84■■□□□ 1.41
CCDC28B-202ENST00000421922 POLR3GLQ9BT43 218 aa23.84■■□□□ 1.41
CCDC28B-202ENST00000421922 STK26Q9P289 416 aa23.84■■□□□ 1.41
CCDC28B-202ENST00000421922 CENPJQ9HC77 1338 aaPredicted RBP23.83■■□□□ 1.41
CCDC28B-202ENST00000421922 TMF1P82094 1093 aa23.83■■□□□ 1.4
CCDC28B-202ENST00000421922 WASHC2AQ641Q2 1341 aa23.81■■□□□ 1.4
CCDC28B-202ENST00000421922 ADAMTS13Q76LX8 1427 aa23.81■■□□□ 1.4
CCDC28B-202ENST00000421922 LRPPRCP42704 1394 aaKnown RBP23.8■■□□□ 1.4
CCDC28B-202ENST00000421922 KIF7Q2M1P5 1343 aa23.8■■□□□ 1.4
CCDC28B-202ENST00000421922 KNDC1Q76NI1 1749 aa23.79■■□□□ 1.4
CCDC28B-202ENST00000421922 DDX10Q13206 875 aaKnown RBP23.79■■□□□ 1.4
CCDC28B-202ENST00000421922 DLC1Q96QB1 1528 aa23.77■■□□□ 1.4
CCDC28B-202ENST00000421922 SOCS7O14512 581 aa23.77■■□□□ 1.4
CCDC28B-202ENST00000421922 TESK2Q96S53 571 aa23.77■■□□□ 1.4
CCDC28B-202ENST00000421922 METP08581 1390 aa23.77■■□□□ 1.4
CCDC28B-202ENST00000421922 CDCA8Q53HL2 280 aa23.76■■□□□ 1.39
CCDC28B-202ENST00000421922 SLC26A8Q96RN1 970 aa23.76■■□□□ 1.39
CCDC28B-202ENST00000421922 POGKQ9P215 609 aa23.76■■□□□ 1.39
CCDC28B-202ENST00000421922 DMRT2Q9Y5R5 561 aa23.76■■□□□ 1.39
CCDC28B-202ENST00000421922 C11orf95C9JLR9 678 aaPredicted RBP23.76■■□□□ 1.39
CCDC28B-202ENST00000421922 TBX22Q9Y458 520 aa23.76■■□□□ 1.39
CCDC28B-202ENST00000421922 SBNO2Q9Y2G9 1366 aa23.75■■□□□ 1.39
CCDC28B-202ENST00000421922 NPHP4O75161 1426 aaPredicted RBP23.74■■□□□ 1.39
CCDC28B-202ENST00000421922 MED14O60244 1454 aa23.74■■□□□ 1.39
CCDC28B-202ENST00000421922 ABCC11Q96J66 1382 aa23.74■■□□□ 1.39
CCDC28B-202ENST00000421922 CPS1P31327 1500 aa23.73■■□□□ 1.39
CCDC28B-202ENST00000421922 PRAM1Q96QH2 718 aa23.71■■□□□ 1.39
CCDC28B-202ENST00000421922 TECPR2O15040 1411 aa23.7■■□□□ 1.38
CCDC28B-202ENST00000421922 PIK3R4Q99570 1358 aa23.7■■□□□ 1.38
CCDC28B-202ENST00000421922 NCKAP5LQ9HCH0 1330 aa23.69■■□□□ 1.38
CCDC28B-202ENST00000421922 SAFB2Q14151 953 aaKnown RBP eCLIP23.69■■□□□ 1.38
CCDC28B-202ENST00000421922 FAM135BQ49AJ0 1406 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms