RNA–Protein interactions for RNA: ENST00000418518.2

LINCMD1-201, Transcript of long intergenic non-protein coding RNA, muscle differentiation 1, humanhuman

TSL 5 BASIC

Gene LINCMD1, Length 462 nt, Biotype lincRNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINCMD1-201ENST00000418518 NBPF1Q3BBV0 1214 aa12.56□□□□□ -0.4
LINCMD1-201ENST00000418518 PRKRIP1Q9H875 184 aaPredicted RBP12.56□□□□□ -0.4
LINCMD1-201ENST00000418518 NEXMIFQ5QGS0 1516 aa12.54□□□□□ -0.4
LINCMD1-201ENST00000418518 TESK2Q96S53 571 aa12.54□□□□□ -0.4
LINCMD1-201ENST00000418518 MYOM1P52179 1685 aa12.54□□□□□ -0.4
LINCMD1-201ENST00000418518 KTN1Q86UP2 1357 aaKnown RBP12.53□□□□□ -0.4
LINCMD1-201ENST00000418518 PIK3C2GO75747 1445 aa12.53□□□□□ -0.4
LINCMD1-201ENST00000418518 TMEM131LA2VDJ0 1609 aa12.52□□□□□ -0.4
LINCMD1-201ENST00000418518 CLTCQ00610 1675 aaKnown RBP12.52□□□□□ -0.4
LINCMD1-201ENST00000418518 PPP6R1Q9UPN7 881 aa12.52□□□□□ -0.41
LINCMD1-201ENST00000418518 WASHC2CQ9Y4E1 1318 aa12.52□□□□□ -0.41
LINCMD1-201ENST00000418518 KDM5AP29375 1690 aaKnown RBP12.51□□□□□ -0.41
LINCMD1-201ENST00000418518 GGT6Q6P531 493 aa12.51□□□□□ -0.41
LINCMD1-201ENST00000418518 RPGRIP1LQ68CZ1 1315 aa12.51□□□□□ -0.41
LINCMD1-201ENST00000418518 DISP3Q9P2K9 1392 aa12.51□□□□□ -0.41
LINCMD1-201ENST00000418518 ZFYVE9O95405 1425 aa12.51□□□□□ -0.41
LINCMD1-201ENST00000418518 ADGRB1O14514 1584 aa12.51□□□□□ -0.41
LINCMD1-201ENST00000418518 SPATA31D1Q6ZQQ2 1576 aa12.51□□□□□ -0.41
LINCMD1-201ENST00000418518 GTF3C3Q9Y5Q9 886 aa12.5□□□□□ -0.41
LINCMD1-201ENST00000418518 EIF3AQ14152 1382 aaKnown RBP12.5□□□□□ -0.41
LINCMD1-201ENST00000418518 ERVK-7P63135 1459 aa12.5□□□□□ -0.41
LINCMD1-201ENST00000418518 SBNO2Q9Y2G9 1366 aa12.49□□□□□ -0.41
LINCMD1-201ENST00000418518 ARHGEF28Q8N1W1 1705 aaKnown RBP12.48□□□□□ -0.41
LINCMD1-201ENST00000418518 QRICH2Q9H0J4 1663 aa12.47□□□□□ -0.41
LINCMD1-201ENST00000418518 ADGRF5Q8IZF2 1346 aa12.46□□□□□ -0.41
LINCMD1-201ENST00000418518 TMF1P82094 1093 aa12.45□□□□□ -0.42
LINCMD1-201ENST00000418518 SLC52A1Q9NWF4 448 aa12.45□□□□□ -0.42
LINCMD1-201ENST00000418518 SLC24A1O60721 1099 aa12.44□□□□□ -0.42
LINCMD1-201ENST00000418518 PARD3Q8TEW0 1356 aa12.43□□□□□ -0.42
LINCMD1-201ENST00000418518 SETD1AO15047 1707 aaKnown RBP12.42□□□□□ -0.42
LINCMD1-201ENST00000418518 ASXL1Q8IXJ9 1541 aa12.42□□□□□ -0.42
LINCMD1-201ENST00000418518 PER1O15534 1290 aaPredicted RBP12.42□□□□□ -0.42
LINCMD1-201ENST00000418518 RALBP1Q15311 655 aa12.42□□□□□ -0.42
LINCMD1-201ENST00000418518 CCDC184Q52MB2 194 aa12.42□□□□□ -0.42
LINCMD1-201ENST00000418518 C14orf93Q9H972 538 aaKnown RBP12.42□□□□□ -0.42
LINCMD1-201ENST00000418518 BRD4O60885 1362 aaPredicted RBP12.42□□□□□ -0.42
LINCMD1-201ENST00000418518 CDCA8Q53HL2 280 aa12.41□□□□□ -0.42
LINCMD1-201ENST00000418518 CFAP70Q5T0N1 1121 aa12.41□□□□□ -0.42
LINCMD1-201ENST00000418518 MRS2Q9HD23 443 aa12.4□□□□□ -0.42
LINCMD1-201ENST00000418518 MYBBP1AQ9BQG0 1328 aaKnown RBP12.39□□□□□ -0.43
LINCMD1-201ENST00000418518 IDI1Q13907 227 aa12.39□□□□□ -0.43
LINCMD1-201ENST00000418518 POLR3GLQ9BT43 218 aa12.39□□□□□ -0.43
LINCMD1-201ENST00000418518 USP32Q8NFA0 1604 aa12.39□□□□□ -0.43
LINCMD1-201ENST00000418518 NPC1L1Q9UHC9 1359 aa12.39□□□□□ -0.43
LINCMD1-201ENST00000418518 LRPPRCP42704 1394 aaKnown RBP12.38□□□□□ -0.43
LINCMD1-201ENST00000418518 VGFO15240 615 aaPredicted RBP12.37□□□□□ -0.43
LINCMD1-201ENST00000418518 INSRP06213 1382 aa12.37□□□□□ -0.43
LINCMD1-201ENST00000418518 A2ML1A8K2U0 1454 aa12.37□□□□□ -0.43
LINCMD1-201ENST00000418518 ALKQ9UM73 1620 aa12.36□□□□□ -0.43
LINCMD1-201ENST00000418518 ZBED9Q6R2W3 1325 aa12.36□□□□□ -0.43
LINCMD1-201ENST00000418518 UBR1Q8IWV7 1749 aa12.35□□□□□ -0.43
LINCMD1-201ENST00000418518 CHGAP10645 457 aaKnown RBP12.35□□□□□ -0.43
LINCMD1-201ENST00000418518 NRXN3Q9Y4C0 1643 aa12.35□□□□□ -0.43
LINCMD1-201ENST00000418518 CENPJQ9HC77 1338 aaPredicted RBP12.35□□□□□ -0.43
LINCMD1-201ENST00000418518 KNDC1Q76NI1 1749 aa12.34□□□□□ -0.43
LINCMD1-201ENST00000418518 DLC1Q96QB1 1528 aa12.34□□□□□ -0.43
LINCMD1-201ENST00000418518 TULP4Q9NRJ4 1543 aa12.34□□□□□ -0.43
LINCMD1-201ENST00000418518 HNRNPUQ00839 825 aaKnown RBP eCLIP12.34□□□□□ -0.43
LINCMD1-201ENST00000418518 NLRP13Q86W25 1043 aa12.33□□□□□ -0.44
LINCMD1-201ENST00000418518 PNISRQ8TF01 805 aaKnown RBP12.33□□□□□ -0.44
LINCMD1-201ENST00000418518 PUS7Q96PZ0 661 aaKnown RBP12.33□□□□□ -0.44
LINCMD1-201ENST00000418518 PANK3Q9H999 370 aa12.33□□□□□ -0.44
LINCMD1-201ENST00000418518 PTPRMP28827 1452 aa12.33□□□□□ -0.44
LINCMD1-201ENST00000418518 FER1L4A9Z1Z3 1794 aa12.33□□□□□ -0.44
LINCMD1-201ENST00000418518 FBXO31Q5XUX0 539 aaPredicted RBP12.32□□□□□ -0.44
LINCMD1-201ENST00000418518 C3P01024 1663 aa12.31□□□□□ -0.44
LINCMD1-201ENST00000418518 ZMYM3Q14202 1370 aa12.3□□□□□ -0.44
LINCMD1-201ENST00000418518 RIMS2Q9UQ26 1411 aa12.3□□□□□ -0.44
LINCMD1-201ENST00000418518 AMER1Q5JTC6 1135 aaPredicted RBP12.3□□□□□ -0.44
LINCMD1-201ENST00000418518 FAM9BQ8IZU0 186 aa12.29□□□□□ -0.44
LINCMD1-201ENST00000418518 BLMP54132 1417 aaPredicted RBP12.28□□□□□ -0.44
LINCMD1-201ENST00000418518 YTHDC2Q9H6S0 1430 aaKnown RBP12.28□□□□□ -0.44
LINCMD1-201ENST00000418518 ANKRD26Q9UPS8 1709 aa12.28□□□□□ -0.44
LINCMD1-201ENST00000418518 NLRP1Q9C000 1473 aa12.28□□□□□ -0.44
LINCMD1-201ENST00000418518 TMC1Q8TDI8 760 aa12.28□□□□□ -0.44
LINCMD1-201ENST00000418518 TNRQ92752 1358 aa12.28□□□□□ -0.44
LINCMD1-201ENST00000418518 SUPT16HQ9Y5B9 1047 aaKnown RBP12.27□□□□□ -0.45
LINCMD1-201ENST00000418518 TMEM132EQ6IEE7 984 aa12.26□□□□□ -0.45
LINCMD1-201ENST00000418518 TRAK1Q9UPV9 953 aa12.26□□□□□ -0.45
LINCMD1-201ENST00000418518 KNSTRNQ9Y448 316 aa12.26□□□□□ -0.45
LINCMD1-201ENST00000418518 NINLQ9Y2I6 1382 aa12.26□□□□□ -0.45
LINCMD1-201ENST00000418518 CPS1P31327 1500 aa12.26□□□□□ -0.45
LINCMD1-201ENST00000418518 SMG6Q86US8 1419 aaKnown RBP12.25□□□□□ -0.45
LINCMD1-201ENST00000418518 TECPR2O15040 1411 aa12.24□□□□□ -0.45
LINCMD1-201ENST00000418518 EVC2Q86UK5 1308 aa12.23□□□□□ -0.45
LINCMD1-201ENST00000418518 CC2D1BQ5T0F9 858 aaKnown RBP12.23□□□□□ -0.45
LINCMD1-201ENST00000418518 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.23□□□□□ -0.45
LINCMD1-201ENST00000418518 SLIT1O75093 1534 aa12.22□□□□□ -0.45
LINCMD1-201ENST00000418518 ARHGAP23Q9P227 1491 aa12.22□□□□□ -0.45
LINCMD1-201ENST00000418518 ABCC11Q96J66 1382 aa12.22□□□□□ -0.45
LINCMD1-201ENST00000418518 MLECQ14165 292 aa12.22□□□□□ -0.45
LINCMD1-201ENST00000418518 ESF1Q9H501 851 aaKnown RBP12.22□□□□□ -0.45
LINCMD1-201ENST00000418518 SHPRHQ149N8 1683 aa12.22□□□□□ -0.45
LINCMD1-201ENST00000418518 NSD2O96028 1365 aa12.21□□□□□ -0.45
LINCMD1-201ENST00000418518 ANKRD36BQ8N2N9 1353 aa12.21□□□□□ -0.45
LINCMD1-201ENST00000418518 KIF20BQ96Q89 1820 aa12.21□□□□□ -0.45
LINCMD1-201ENST00000418518 PPP2R1AP30153 589 aa12.21□□□□□ -0.45
LINCMD1-201ENST00000418518 NUTM2DQ5VT03 806 aaPredicted RBP12.21□□□□□ -0.45
LINCMD1-201ENST00000418518 NSD3Q9BZ95 1437 aa12.2□□□□□ -0.46
LINCMD1-201ENST00000418518 ATAD2Q6PL18 1390 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms