RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 PODXL2Q9NZ53 605 aa10.28□□□□□ -0.76
HMGXB4-202ENST00000418170 TPM2P07951 284 aa10.27□□□□□ -0.76
HMGXB4-202ENST00000418170 PDCL3Q9H2J4 239 aa10.27□□□□□ -0.76
HMGXB4-202ENST00000418170 CC2D1BQ5T0F9 858 aaKnown RBP10.27□□□□□ -0.77
HMGXB4-202ENST00000418170 TBC1D2Q9BYX2 928 aa10.27□□□□□ -0.77
HMGXB4-202ENST00000418170 ADAMTS8Q9UP79 889 aa10.27□□□□□ -0.77
HMGXB4-202ENST00000418170 TRPM1Q7Z4N2 1603 aa10.26□□□□□ -0.77
HMGXB4-202ENST00000418170 KDM5DQ9BY66 1539 aa10.26□□□□□ -0.77
HMGXB4-202ENST00000418170 IGHDP01880 384 aa10.26□□□□□ -0.77
HMGXB4-202ENST00000418170 GOLGA2Q08379 1002 aa10.26□□□□□ -0.77
HMGXB4-202ENST00000418170 GZF1Q9H116 711 aaPredicted RBP10.26□□□□□ -0.77
HMGXB4-202ENST00000418170 MYH16Q9H6N6 1097 aa10.26□□□□□ -0.77
HMGXB4-202ENST00000418170 ERBB4Q15303 1308 aa10.26□□□□□ -0.77
HMGXB4-202ENST00000418170 COL17A1Q9UMD9 1497 aaPredicted RBP10.26□□□□□ -0.77
HMGXB4-202ENST00000418170 SHANK2Q9UPX8 1470 aa10.26□□□□□ -0.77
HMGXB4-202ENST00000418170 ISY1Q9ULR0 285 aaKnown RBP10.26□□□□□ -0.77
HMGXB4-202ENST00000418170 TBC1D32Q96NH3 1257 aa10.26□□□□□ -0.77
HMGXB4-202ENST00000418170 PLXNC1O60486 1568 aa10.25□□□□□ -0.77
HMGXB4-202ENST00000418170 TRAK2O60296 914 aa10.25□□□□□ -0.77
HMGXB4-202ENST00000418170 GRPEL1Q9HAV7 217 aa10.25□□□□□ -0.77
HMGXB4-202ENST00000418170 UPF2Q9HAU5 1272 aaKnown RBP10.25□□□□□ -0.77
HMGXB4-202ENST00000418170 ZMYM3Q14202 1370 aa10.24□□□□□ -0.77
HMGXB4-202ENST00000418170 SLFN5Q08AF3 891 aa10.24□□□□□ -0.77
HMGXB4-202ENST00000418170 KDM2AQ9Y2K7 1162 aa10.24□□□□□ -0.77
HMGXB4-202ENST00000418170 UNC13BO14795 1591 aa10.24□□□□□ -0.77
HMGXB4-202ENST00000418170 TRMT2AQ8IZ69 625 aaKnown RBP10.24□□□□□ -0.77
HMGXB4-202ENST00000418170 CALD1Q05682 793 aaKnown RBP10.23□□□□□ -0.77
HMGXB4-202ENST00000418170 NKTRP30414 1462 aaKnown RBP10.23□□□□□ -0.77
HMGXB4-202ENST00000418170 PTPRGP23470 1445 aa10.23□□□□□ -0.77
HMGXB4-202ENST00000418170 CGNL1Q0VF96 1302 aa10.23□□□□□ -0.77
HMGXB4-202ENST00000418170 ARID3CA6NKF2 412 aa10.23□□□□□ -0.77
HMGXB4-202ENST00000418170 LAMC1P11047 1609 aa10.23□□□□□ -0.77
HMGXB4-202ENST00000418170 ABCC1P33527 1531 aa10.22□□□□□ -0.77
HMGXB4-202ENST00000418170 FBLN2P98095 1184 aa10.22□□□□□ -0.77
HMGXB4-202ENST00000418170 PANK3Q9H999 370 aa10.22□□□□□ -0.77
HMGXB4-202ENST00000418170 CHMP5Q9NZZ3 219 aa10.22□□□□□ -0.77
HMGXB4-202ENST00000418170 ANKRD50Q9ULJ7 1429 aa10.22□□□□□ -0.77
HMGXB4-202ENST00000418170 DEPDC5O75140 1603 aa10.22□□□□□ -0.77
HMGXB4-202ENST00000418170 SYCP2Q9BX26 1530 aa10.22□□□□□ -0.77
HMGXB4-202ENST00000418170 TRIM44Q96DX7 344 aaPredicted RBP10.21□□□□□ -0.77
HMGXB4-202ENST00000418170 CCDC144AA2RUR9 1427 aa10.21□□□□□ -0.77
HMGXB4-202ENST00000418170 PRAG1Q86YV5 1406 aa10.21□□□□□ -0.77
HMGXB4-202ENST00000418170 DISP3Q9P2K9 1392 aa10.21□□□□□ -0.77
HMGXB4-202ENST00000418170 MAGI2Q86UL8 1455 aa10.21□□□□□ -0.78
HMGXB4-202ENST00000418170 WDR43Q15061 677 aaKnown RBP eCLIP10.21□□□□□ -0.78
HMGXB4-202ENST00000418170 ANKRD30AQ9BXX3 1397 aa10.21□□□□□ -0.78
HMGXB4-202ENST00000418170 PDE3AQ14432 1141 aa10.21□□□□□ -0.78
HMGXB4-202ENST00000418170 CLUAP1Q96AJ1 413 aa10.21□□□□□ -0.78
HMGXB4-202ENST00000418170 GPRASP1Q5JY77 1395 aa10.21□□□□□ -0.78
HMGXB4-202ENST00000418170 NINLQ9Y2I6 1382 aa10.21□□□□□ -0.78
HMGXB4-202ENST00000418170 ARAP3Q8WWN8 1544 aa10.2□□□□□ -0.78
HMGXB4-202ENST00000418170 BCAR3O75815 825 aa10.2□□□□□ -0.78
HMGXB4-202ENST00000418170 PRDM15P57071 1507 aaPredicted RBP10.2□□□□□ -0.78
HMGXB4-202ENST00000418170 DDX11L8A8MPP1 907 aa10.2□□□□□ -0.78
HMGXB4-202ENST00000418170 INO80Q9ULG1 1556 aaPredicted RBP10.2□□□□□ -0.78
HMGXB4-202ENST00000418170 TESK2Q96S53 571 aa10.2□□□□□ -0.78
HMGXB4-202ENST00000418170 PRDM4Q9UKN5 801 aa10.2□□□□□ -0.78
HMGXB4-202ENST00000418170 NUP155O75694 1391 aa10.2□□□□□ -0.78
HMGXB4-202ENST00000418170 MROH1Q8NDA8 1641 aa10.19□□□□□ -0.78
HMGXB4-202ENST00000418170 PLEKHG5O94827 1062 aa10.18□□□□□ -0.78
HMGXB4-202ENST00000418170 KIAA1211Q6ZU35 1233 aa10.18□□□□□ -0.78
HMGXB4-202ENST00000418170 ERBINQ96RT1 1412 aa10.18□□□□□ -0.78
HMGXB4-202ENST00000418170 PPP2R1AP30153 589 aa10.18□□□□□ -0.78
HMGXB4-202ENST00000418170 SPRYD3Q8NCJ5 442 aa10.18□□□□□ -0.78
HMGXB4-202ENST00000418170 IQGAP3Q86VI3 1631 aa10.18□□□□□ -0.78
HMGXB4-202ENST00000418170 SPINK5Q9NQ38 1064 aaPredicted RBP10.18□□□□□ -0.78
HMGXB4-202ENST00000418170 RTEL1-TNFRSF6BF6WH68 1400 aa10.17□□□□□ -0.78
HMGXB4-202ENST00000418170 PPRC1Q5VV67 1664 aaKnown RBP10.17□□□□□ -0.78
HMGXB4-202ENST00000418170 TERF1P54274 439 aa10.16□□□□□ -0.78
HMGXB4-202ENST00000418170 CFDP1Q9UEE9 299 aaPredicted RBP10.16□□□□□ -0.78
HMGXB4-202ENST00000418170 KIDINS220Q9ULH0 1771 aa10.16□□□□□ -0.78
HMGXB4-202ENST00000418170 NBPF1Q3BBV0 1214 aa10.16□□□□□ -0.78
HMGXB4-202ENST00000418170 E9PSI1 815 aa10.16□□□□□ -0.78
HMGXB4-202ENST00000418170 ZFYVE16Q7Z3T8 1539 aa10.16□□□□□ -0.78
HMGXB4-202ENST00000418170 PMFBP1Q8TBY8 1022 aa10.16□□□□□ -0.78
HMGXB4-202ENST00000418170 ZNF692Q9BU19 519 aaPredicted RBP10.16□□□□□ -0.78
HMGXB4-202ENST00000418170 PIK3C2GO75747 1445 aa10.15□□□□□ -0.78
HMGXB4-202ENST00000418170 NCOA3Q9Y6Q9 1424 aa10.15□□□□□ -0.78
HMGXB4-202ENST00000418170 AAMPQ13685 434 aa10.15□□□□□ -0.78
HMGXB4-202ENST00000418170 GAS2L3Q86XJ1 694 aa10.15□□□□□ -0.78
HMGXB4-202ENST00000418170 COG6Q9Y2V7 657 aa10.15□□□□□ -0.78
HMGXB4-202ENST00000418170 OFD1O75665 1012 aa10.15□□□□□ -0.78
HMGXB4-202ENST00000418170 TMF1P82094 1093 aa10.15□□□□□ -0.78
HMGXB4-202ENST00000418170 MAP7D2Q96T17 732 aa10.15□□□□□ -0.78
HMGXB4-202ENST00000418170 VWDEQ8N2E2 1590 aa10.15□□□□□ -0.79
HMGXB4-202ENST00000418170 PANK1Q8TE04 598 aa10.14□□□□□ -0.79
HMGXB4-202ENST00000418170 WDR7Q9Y4E6 1490 aa10.14□□□□□ -0.79
HMGXB4-202ENST00000418170 DDIT3P35638 169 aa10.14□□□□□ -0.79
HMGXB4-202ENST00000418170 RIPK4P57078 832 aa10.14□□□□□ -0.79
HMGXB4-202ENST00000418170 CCDC173Q0VFZ6 552 aa10.14□□□□□ -0.79
HMGXB4-202ENST00000418170 ZSCAN30Q86W11 494 aa10.14□□□□□ -0.79
HMGXB4-202ENST00000418170 PPP1R9BQ96SB3 815 aa10.14□□□□□ -0.79
HMGXB4-202ENST00000418170 C22orf23Q9BZE7 217 aa10.14□□□□□ -0.79
HMGXB4-202ENST00000418170 MAP3K4Q9Y6R4 1608 aa10.14□□□□□ -0.79
HMGXB4-202ENST00000418170 EIF2AK4Q9P2K8 1649 aaKnown RBP10.13□□□□□ -0.79
HMGXB4-202ENST00000418170 SIGLEC1Q9BZZ2 1709 aa10.13□□□□□ -0.79
HMGXB4-202ENST00000418170 C9orf84Q5VXU9 1444 aa10.13□□□□□ -0.79
HMGXB4-202ENST00000418170 SCAPERQ9BY12 1400 aa10.13□□□□□ -0.79
HMGXB4-202ENST00000418170 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.13□□□□□ -0.79
HMGXB4-202ENST00000418170 PDZRN3Q9UPQ7 1066 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 409.1 ms