RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 SCAPERQ9BY12 1400 aa19■□□□□ 0.63
NCKIPSD-204ENST00000416649 ARHGEF5Q12774 1597 aa18.99■□□□□ 0.63
NCKIPSD-204ENST00000416649 FANCAO15360 1455 aa18.98■□□□□ 0.63
NCKIPSD-204ENST00000416649 PANK2Q9BZ23 570 aa18.98■□□□□ 0.63
NCKIPSD-204ENST00000416649 SPRYD3Q8NCJ5 442 aa18.97■□□□□ 0.63
NCKIPSD-204ENST00000416649 SENP3Q9H4L4 574 aaPredicted RBP18.96■□□□□ 0.63
NCKIPSD-204ENST00000416649 FAM135AQ9P2D6 1515 aa18.95■□□□□ 0.62
NCKIPSD-204ENST00000416649 GOLGA6L3A6NEY3 463 aa18.95■□□□□ 0.62
NCKIPSD-204ENST00000416649 XRCC6P12956 609 aaKnown RBP eCLIP18.95■□□□□ 0.62
NCKIPSD-204ENST00000416649 BECN1Q14457 450 aa18.95■□□□□ 0.62
NCKIPSD-204ENST00000416649 RRP9O43818 475 aaKnown RBP18.94■□□□□ 0.62
NCKIPSD-204ENST00000416649 RAPGEF3O95398 923 aa18.94■□□□□ 0.62
NCKIPSD-204ENST00000416649 CCDC144AA2RUR9 1427 aa18.92■□□□□ 0.62
NCKIPSD-204ENST00000416649 ADGRL1O94910 1474 aa18.92■□□□□ 0.62
NCKIPSD-204ENST00000416649 SEC24BO95487 1268 aa18.92■□□□□ 0.62
NCKIPSD-204ENST00000416649 NBPF1Q3BBV0 1214 aa18.91■□□□□ 0.62
NCKIPSD-204ENST00000416649 GGT6Q6P531 493 aa18.91■□□□□ 0.62
NCKIPSD-204ENST00000416649 ABCC1P33527 1531 aa18.9■□□□□ 0.62
NCKIPSD-204ENST00000416649 CLCN1P35523 988 aa18.9■□□□□ 0.62
NCKIPSD-204ENST00000416649 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.88■□□□□ 0.61
NCKIPSD-204ENST00000416649 CD109Q6YHK3 1445 aa18.87■□□□□ 0.61
NCKIPSD-204ENST00000416649 KDM5CP41229 1560 aa18.86■□□□□ 0.61
NCKIPSD-204ENST00000416649 CHGAP10645 457 aaKnown RBP18.86■□□□□ 0.61
NCKIPSD-204ENST00000416649 USP19O94966 1318 aa18.85■□□□□ 0.61
NCKIPSD-204ENST00000416649 PLA2R1Q13018 1463 aa18.84■□□□□ 0.61
NCKIPSD-204ENST00000416649 ADAMTS8Q9UP79 889 aa18.84■□□□□ 0.61
NCKIPSD-204ENST00000416649 DUOX2Q9NRD8 1548 aa18.83■□□□□ 0.61
NCKIPSD-204ENST00000416649 PODXL2Q9NZ53 605 aa18.83■□□□□ 0.61
NCKIPSD-204ENST00000416649 PARD3Q8TEW0 1356 aa18.82■□□□□ 0.6
NCKIPSD-204ENST00000416649 IGHDP01880 384 aa18.81■□□□□ 0.6
NCKIPSD-204ENST00000416649 DUSP27Q5VZP5 1158 aa18.81■□□□□ 0.6
NCKIPSD-204ENST00000416649 MYH16Q9H6N6 1097 aa18.8■□□□□ 0.6
NCKIPSD-204ENST00000416649 PLEKHG5O94827 1062 aa18.8■□□□□ 0.6
NCKIPSD-204ENST00000416649 FAM69CQ0P6D2 419 aa18.8■□□□□ 0.6
NCKIPSD-204ENST00000416649 UPF2Q9HAU5 1272 aaKnown RBP18.8■□□□□ 0.6
NCKIPSD-204ENST00000416649 WDR43Q15061 677 aaKnown RBP eCLIP18.79■□□□□ 0.6
NCKIPSD-204ENST00000416649 GOLGA2Q08379 1002 aa18.78■□□□□ 0.6
NCKIPSD-204ENST00000416649 MAST1Q9Y2H9 1570 aa18.78■□□□□ 0.6
NCKIPSD-204ENST00000416649 ZFYVE16Q7Z3T8 1539 aa18.78■□□□□ 0.6
NCKIPSD-204ENST00000416649 KDM5DQ9BY66 1539 aa18.78■□□□□ 0.6
NCKIPSD-204ENST00000416649 ERBINQ96RT1 1412 aa18.78■□□□□ 0.6
NCKIPSD-204ENST00000416649 ESPNB1AK53 854 aa18.78■□□□□ 0.6
NCKIPSD-204ENST00000416649 BCAR3O75815 825 aa18.78■□□□□ 0.6
NCKIPSD-204ENST00000416649 TRIM44Q96DX7 344 aaPredicted RBP18.78■□□□□ 0.6
NCKIPSD-204ENST00000416649 ANTXR1Q9H6X2 564 aa18.78■□□□□ 0.6
NCKIPSD-204ENST00000416649 MCM4P33991 863 aa18.77■□□□□ 0.6
NCKIPSD-204ENST00000416649 CFAP65Q6ZU64 1925 aaKnown RBP18.77■□□□□ 0.6
NCKIPSD-204ENST00000416649 TBC1D2Q9BYX2 928 aa18.77■□□□□ 0.6
NCKIPSD-204ENST00000416649 ABCA9Q8IUA7 1624 aa18.77■□□□□ 0.59
NCKIPSD-204ENST00000416649 NUTM2DQ5VT03 806 aaPredicted RBP18.77■□□□□ 0.59
NCKIPSD-204ENST00000416649 PANK3Q9H999 370 aa18.77■□□□□ 0.59
NCKIPSD-204ENST00000416649 ATP7AQ04656 1500 aa18.77■□□□□ 0.59
NCKIPSD-204ENST00000416649 PLXNC1O60486 1568 aa18.76■□□□□ 0.59
NCKIPSD-204ENST00000416649 FSD2A1L4K1 749 aa18.76■□□□□ 0.59
NCKIPSD-204ENST00000416649 PER1O15534 1290 aaPredicted RBP18.76■□□□□ 0.59
NCKIPSD-204ENST00000416649 TRAK2O60296 914 aa18.76■□□□□ 0.59
NCKIPSD-204ENST00000416649 PLEKHH1Q9ULM0 1364 aa18.75■□□□□ 0.59
NCKIPSD-204ENST00000416649 CANXP27824 592 aaKnown RBP18.75■□□□□ 0.59
NCKIPSD-204ENST00000416649 ERBB4Q15303 1308 aa18.75■□□□□ 0.59
NCKIPSD-204ENST00000416649 BLMP54132 1417 aaPredicted RBP18.74■□□□□ 0.59
NCKIPSD-204ENST00000416649 MRE11P49959 708 aa18.73■□□□□ 0.59
NCKIPSD-204ENST00000416649 CCDC146Q8IYE0 955 aa18.73■□□□□ 0.59
NCKIPSD-204ENST00000416649 KANK1Q14678 1352 aa18.73■□□□□ 0.59
NCKIPSD-204ENST00000416649 RALGAPBQ86X10 1494 aa18.73■□□□□ 0.59
NCKIPSD-204ENST00000416649 GRPEL1Q9HAV7 217 aa18.72■□□□□ 0.59
NCKIPSD-204ENST00000416649 UNC13BO14795 1591 aa18.72■□□□□ 0.59
NCKIPSD-204ENST00000416649 A2MP01023 1474 aa18.72■□□□□ 0.59
NCKIPSD-204ENST00000416649 COG6Q9Y2V7 657 aa18.71■□□□□ 0.59
NCKIPSD-204ENST00000416649 ZMYM4Q5VZL5 1548 aa18.71■□□□□ 0.59
NCKIPSD-204ENST00000416649 RTEL1-TNFRSF6BF6WH68 1400 aa18.7■□□□□ 0.58
NCKIPSD-204ENST00000416649 MAPK8IP3Q9UPT6 1336 aa18.69■□□□□ 0.58
NCKIPSD-204ENST00000416649 UGGT1Q9NYU2 1555 aa18.69■□□□□ 0.58
NCKIPSD-204ENST00000416649 PANK1Q8TE04 598 aa18.69■□□□□ 0.58
NCKIPSD-204ENST00000416649 IQGAP3Q86VI3 1631 aa18.68■□□□□ 0.58
NCKIPSD-204ENST00000416649 MLECQ14165 292 aa18.68■□□□□ 0.58
NCKIPSD-204ENST00000416649 PRAG1Q86YV5 1406 aa18.68■□□□□ 0.58
NCKIPSD-204ENST00000416649 SPINK5Q9NQ38 1064 aaPredicted RBP18.67■□□□□ 0.58
NCKIPSD-204ENST00000416649 ARID3AQ99856 593 aa18.67■□□□□ 0.58
NCKIPSD-204ENST00000416649 ZNF518AQ6AHZ1 1483 aa18.67■□□□□ 0.58
NCKIPSD-204ENST00000416649 A0A0U1RQG5 324 aaPredicted RBP18.67■□□□□ 0.58
NCKIPSD-204ENST00000416649 RBM10P98175 930 aaKnown RBP18.67■□□□□ 0.58
NCKIPSD-204ENST00000416649 TBC1D32Q96NH3 1257 aa18.66■□□□□ 0.58
NCKIPSD-204ENST00000416649 UHRF1BP1Q6BDS2 1440 aa18.66■□□□□ 0.58
NCKIPSD-204ENST00000416649 SLFN5Q08AF3 891 aa18.66■□□□□ 0.58
NCKIPSD-204ENST00000416649 KIAA1211Q6ZU35 1233 aa18.66■□□□□ 0.58
NCKIPSD-204ENST00000416649 ARAP3Q8WWN8 1544 aa18.66■□□□□ 0.58
NCKIPSD-204ENST00000416649 CLUAP1Q96AJ1 413 aa18.65■□□□□ 0.58
NCKIPSD-204ENST00000416649 PDCL3Q9H2J4 239 aa18.65■□□□□ 0.58
NCKIPSD-204ENST00000416649 ATP10AO60312 1499 aa18.64■□□□□ 0.58
NCKIPSD-204ENST00000416649 CHMP5Q9NZZ3 219 aa18.64■□□□□ 0.58
NCKIPSD-204ENST00000416649 E9PCH4 1651 aa18.64■□□□□ 0.57
NCKIPSD-204ENST00000416649 CFAP70Q5T0N1 1121 aa18.63■□□□□ 0.57
NCKIPSD-204ENST00000416649 EIF3AQ14152 1382 aaKnown RBP18.63■□□□□ 0.57
NCKIPSD-204ENST00000416649 POGZQ7Z3K3 1410 aa18.63■□□□□ 0.57
NCKIPSD-204ENST00000416649 APAF1O14727 1248 aa18.63■□□□□ 0.57
NCKIPSD-204ENST00000416649 NEUROD2Q15784 382 aa18.63■□□□□ 0.57
NCKIPSD-204ENST00000416649 KIDINS220Q9ULH0 1771 aa18.63■□□□□ 0.57
NCKIPSD-204ENST00000416649 TPM2P07951 284 aa18.63■□□□□ 0.57
NCKIPSD-204ENST00000416649 INO80Q9ULG1 1556 aaPredicted RBP18.62■□□□□ 0.57
NCKIPSD-204ENST00000416649 MFAP1P55081 439 aaKnown RBP18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms