RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 MYO3AQ8NEV4 1616 aa22.08■■□□□ 1.12
SHMT2-202ENST00000414700 NLRP1Q9C000 1473 aa22.07■■□□□ 1.12
SHMT2-202ENST00000414700 KDM4FA0A1W2PPD8 638 aa22.06■■□□□ 1.12
SHMT2-202ENST00000414700 MYOM2P54296 1465 aa22.06■■□□□ 1.12
SHMT2-202ENST00000414700 TRPM1Q7Z4N2 1603 aa22.06■■□□□ 1.12
SHMT2-202ENST00000414700 RPGRIP1LQ68CZ1 1315 aa22.04■■□□□ 1.12
SHMT2-202ENST00000414700 SETD1BQ9UPS6 1966 aaKnown RBP22.04■■□□□ 1.12
SHMT2-202ENST00000414700 RALGAPBQ86X10 1494 aa22.04■■□□□ 1.12
SHMT2-202ENST00000414700 KDM5AP29375 1690 aaKnown RBP22.03■■□□□ 1.12
SHMT2-202ENST00000414700 CENPBP07199 599 aaPredicted RBP22.03■■□□□ 1.12
SHMT2-202ENST00000414700 SENP3Q9H4L4 574 aaPredicted RBP22.03■■□□□ 1.12
SHMT2-202ENST00000414700 NBPF1Q3BBV0 1214 aa22.02■■□□□ 1.12
SHMT2-202ENST00000414700 NRXN1Q9ULB1 1477 aa22.02■■□□□ 1.12
SHMT2-202ENST00000414700 STAC3Q96MF2 364 aa22.01■■□□□ 1.11
SHMT2-202ENST00000414700 HIRIP3Q9BW71 556 aaPredicted RBP22.01■■□□□ 1.11
SHMT2-202ENST00000414700 CEP170BQ9Y4F5 1589 aaPredicted RBP22■■□□□ 1.11
SHMT2-202ENST00000414700 RIMS2Q9UQ26 1411 aa21.99■■□□□ 1.11
SHMT2-202ENST00000414700 GTF3C3Q9Y5Q9 886 aa21.99■■□□□ 1.11
SHMT2-202ENST00000414700 PIK3C2GO75747 1445 aa21.99■■□□□ 1.11
SHMT2-202ENST00000414700 ZFYVE9O95405 1425 aa21.99■■□□□ 1.11
SHMT2-202ENST00000414700 ROCK2O75116 1388 aaKnown RBP21.98■■□□□ 1.11
SHMT2-202ENST00000414700 VGFO15240 615 aaPredicted RBP21.98■■□□□ 1.11
SHMT2-202ENST00000414700 CFAP70Q5T0N1 1121 aa21.97■■□□□ 1.11
SHMT2-202ENST00000414700 TMEM2Q9UHN6 1383 aa21.96■■□□□ 1.11
SHMT2-202ENST00000414700 ZNF142P52746 1687 aaPredicted RBP21.95■■□□□ 1.1
SHMT2-202ENST00000414700 CARD11Q9BXL7 1154 aa21.95■■□□□ 1.1
SHMT2-202ENST00000414700 KIAA1210Q9ULL0 1709 aa21.93■■□□□ 1.1
SHMT2-202ENST00000414700 ZNF316A6NFI3 1004 aaPredicted RBP21.92■■□□□ 1.1
SHMT2-202ENST00000414700 GPRASP1Q5JY77 1395 aa21.92■■□□□ 1.1
SHMT2-202ENST00000414700 HSPA5P11021 654 aaKnown RBP21.92■■□□□ 1.1
SHMT2-202ENST00000414700 LTKP29376 864 aa21.92■■□□□ 1.1
SHMT2-202ENST00000414700 THEMISQ8N1K5 641 aaPredicted RBP21.9■■□□□ 1.1
SHMT2-202ENST00000414700 SLIT1O75093 1534 aa21.9■■□□□ 1.1
SHMT2-202ENST00000414700 ARHGAP23Q9P227 1491 aa21.9■■□□□ 1.1
SHMT2-202ENST00000414700 USP47Q96K76 1375 aa21.9■■□□□ 1.1
SHMT2-202ENST00000414700 EIF4G2P78344 907 aaKnown RBP eCLIP21.9■■□□□ 1.1
SHMT2-202ENST00000414700 C14orf93Q9H972 538 aaKnown RBP21.9■■□□□ 1.1
SHMT2-202ENST00000414700 LAMC1P11047 1609 aa21.88■■□□□ 1.09
SHMT2-202ENST00000414700 NRXN3Q9Y4C0 1643 aa21.88■■□□□ 1.09
SHMT2-202ENST00000414700 TMEM132EQ6IEE7 984 aa21.87■■□□□ 1.09
SHMT2-202ENST00000414700 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.87■■□□□ 1.09
SHMT2-202ENST00000414700 TXNDC2Q86VQ3 553 aa21.87■■□□□ 1.09
SHMT2-202ENST00000414700 ADGRB1O14514 1584 aa21.86■■□□□ 1.09
SHMT2-202ENST00000414700 IQGAP1P46940 1657 aa21.86■■□□□ 1.09
SHMT2-202ENST00000414700 ALKQ9UM73 1620 aa21.86■■□□□ 1.09
SHMT2-202ENST00000414700 ASXL1Q8IXJ9 1541 aa21.85■■□□□ 1.09
SHMT2-202ENST00000414700 SETBP1Q9Y6X0 1596 aa21.84■■□□□ 1.09
SHMT2-202ENST00000414700 SETD1AO15047 1707 aaKnown RBP21.84■■□□□ 1.09
SHMT2-202ENST00000414700 HDGFP51858 240 aaKnown RBP21.84■■□□□ 1.09
SHMT2-202ENST00000414700 DIEXFQ68CQ4 756 aaKnown RBP21.84■■□□□ 1.09
SHMT2-202ENST00000414700 EID1Q9Y6B2 187 aa21.83■■□□□ 1.09
SHMT2-202ENST00000414700 SCAF11Q99590 1463 aaKnown RBP21.82■■□□□ 1.08
SHMT2-202ENST00000414700 ST20-MTHFSA0A0A6YYL1 179 aa21.82■■□□□ 1.08
SHMT2-202ENST00000414700 PLEKHG1Q9ULL1 1385 aa21.8■■□□□ 1.08
SHMT2-202ENST00000414700 BCANQ96GW7 911 aa21.8■■□□□ 1.08
SHMT2-202ENST00000414700 ADAMTS13Q76LX8 1427 aa21.78■■□□□ 1.08
SHMT2-202ENST00000414700 TRAK1Q9UPV9 953 aa21.77■■□□□ 1.08
SHMT2-202ENST00000414700 C11orf95C9JLR9 678 aaPredicted RBP21.77■■□□□ 1.07
SHMT2-202ENST00000414700 METP08581 1390 aa21.77■■□□□ 1.07
SHMT2-202ENST00000414700 SLC26A8Q96RN1 970 aa21.76■■□□□ 1.07
SHMT2-202ENST00000414700 ANKLE2Q86XL3 938 aa21.75■■□□□ 1.07
SHMT2-202ENST00000414700 HSPA2P54652 639 aa21.75■■□□□ 1.07
SHMT2-202ENST00000414700 STK26Q9P289 416 aa21.75■■□□□ 1.07
SHMT2-202ENST00000414700 LMTK3Q96Q04 1460 aa21.74■■□□□ 1.07
SHMT2-202ENST00000414700 MED14O60244 1454 aa21.73■■□□□ 1.07
SHMT2-202ENST00000414700 POLR1AO95602 1720 aaPredicted RBP21.73■■□□□ 1.07
SHMT2-202ENST00000414700 YTHDC2Q9H6S0 1430 aaKnown RBP21.73■■□□□ 1.07
SHMT2-202ENST00000414700 ARHGEF28Q8N1W1 1705 aaKnown RBP21.72■■□□□ 1.07
SHMT2-202ENST00000414700 TESK2Q96S53 571 aa21.72■■□□□ 1.07
SHMT2-202ENST00000414700 WASHC2AQ641Q2 1341 aa21.71■■□□□ 1.07
SHMT2-202ENST00000414700 NCKAP5LQ9HCH0 1330 aa21.71■■□□□ 1.07
SHMT2-202ENST00000414700 EIF3AQ14152 1382 aaKnown RBP21.69■■□□□ 1.06
SHMT2-202ENST00000414700 LRPPRCP42704 1394 aaKnown RBP21.66■■□□□ 1.06
SHMT2-202ENST00000414700 KIF7Q2M1P5 1343 aa21.66■■□□□ 1.06
SHMT2-202ENST00000414700 QRICH2Q9H0J4 1663 aa21.66■■□□□ 1.06
SHMT2-202ENST00000414700 NPHP4O75161 1426 aaPredicted RBP21.66■■□□□ 1.06
SHMT2-202ENST00000414700 PTPRUQ92729 1446 aa21.66■■□□□ 1.06
SHMT2-202ENST00000414700 SAFB2Q14151 953 aaKnown RBP eCLIP21.65■■□□□ 1.06
SHMT2-202ENST00000414700 TBX22Q9Y458 520 aa21.65■■□□□ 1.06
SHMT2-202ENST00000414700 DISP3Q9P2K9 1392 aa21.65■■□□□ 1.06
SHMT2-202ENST00000414700 CENPJQ9HC77 1338 aaPredicted RBP21.65■■□□□ 1.06
SHMT2-202ENST00000414700 DIP2AQ14689 1571 aa21.65■■□□□ 1.06
SHMT2-202ENST00000414700 CCDC7Q96M83 1385 aa21.64■■□□□ 1.06
SHMT2-202ENST00000414700 ABCC11Q96J66 1382 aa21.63■■□□□ 1.05
SHMT2-202ENST00000414700 PRAM1Q96QH2 718 aa21.63■■□□□ 1.05
SHMT2-202ENST00000414700 DDX10Q13206 875 aaKnown RBP21.62■■□□□ 1.05
SHMT2-202ENST00000414700 KNDC1Q76NI1 1749 aa21.62■■□□□ 1.05
SHMT2-202ENST00000414700 POLR3GLQ9BT43 218 aa21.62■■□□□ 1.05
SHMT2-202ENST00000414700 PLEKHH1Q9ULM0 1364 aa21.61■■□□□ 1.05
SHMT2-202ENST00000414700 STRCQ7RTU9 1775 aa21.61■■□□□ 1.05
SHMT2-202ENST00000414700 WAPLQ7Z5K2 1190 aa21.61■■□□□ 1.05
SHMT2-202ENST00000414700 DLC1Q96QB1 1528 aa21.6■■□□□ 1.05
SHMT2-202ENST00000414700 TECPR2O15040 1411 aa21.59■■□□□ 1.05
SHMT2-202ENST00000414700 ROBO2Q9HCK4 1378 aa21.58■■□□□ 1.05
SHMT2-202ENST00000414700 AMOTL2Q9Y2J4 779 aa21.58■■□□□ 1.05
SHMT2-202ENST00000414700 CPS1P31327 1500 aa21.58■■□□□ 1.05
SHMT2-202ENST00000414700 SBNO2Q9Y2G9 1366 aa21.58■■□□□ 1.04
SHMT2-202ENST00000414700 TMF1P82094 1093 aa21.58■■□□□ 1.04
SHMT2-202ENST00000414700 POGKQ9P215 609 aa21.58■■□□□ 1.04
SHMT2-202ENST00000414700 CHD2O14647 1828 aaKnown RBP21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms