RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 ERBINQ96RT1 1412 aa14.24□□□□□ -0.13
PTPRF-204ENST00000412568 IPO8O15397 1037 aaKnown RBP14.24□□□□□ -0.13
PTPRF-204ENST00000412568 DIAPH1O60610 1272 aaKnown RBP14.24□□□□□ -0.13
PTPRF-204ENST00000412568 PMFBP1Q8TBY8 1022 aa14.24□□□□□ -0.13
PTPRF-204ENST00000412568 STAC3Q96MF2 364 aa14.23□□□□□ -0.13
PTPRF-204ENST00000412568 RIPK4P57078 832 aa14.23□□□□□ -0.13
PTPRF-204ENST00000412568 CABP1Q9NZU7 370 aa14.23□□□□□ -0.13
PTPRF-204ENST00000412568 IDI1Q13907 227 aa14.22□□□□□ -0.13
PTPRF-204ENST00000412568 ADGRL1O94910 1474 aa14.22□□□□□ -0.13
PTPRF-204ENST00000412568 KIF14Q15058 1648 aa14.22□□□□□ -0.13
PTPRF-204ENST00000412568 NECTIN2Q92692 538 aa14.21□□□□□ -0.13
PTPRF-204ENST00000412568 UGGT2Q9NYU1 1516 aa14.21□□□□□ -0.13
PTPRF-204ENST00000412568 E9PSI1 815 aa14.21□□□□□ -0.13
PTPRF-204ENST00000412568 CEBPAP49715 358 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-204ENST00000412568 WAPLQ7Z5K2 1190 aa14.2□□□□□ -0.14
PTPRF-204ENST00000412568 TCP11L2Q8N4U5 519 aa14.2□□□□□ -0.14
PTPRF-204ENST00000412568 SLC52A1Q9NWF4 448 aa14.19□□□□□ -0.14
PTPRF-204ENST00000412568 ADAMTS12P58397 1594 aa14.19□□□□□ -0.14
PTPRF-204ENST00000412568 TAOK2Q9UL54 1235 aa14.19□□□□□ -0.14
PTPRF-204ENST00000412568 CDK19Q9BWU1 502 aa14.19□□□□□ -0.14
PTPRF-204ENST00000412568 RWDD1Q9H446 243 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-204ENST00000412568 RAPGEF6Q8TEU7 1601 aa14.19□□□□□ -0.14
PTPRF-204ENST00000412568 BRD4O60885 1362 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-204ENST00000412568 CALD1Q05682 793 aaKnown RBP14.18□□□□□ -0.14
PTPRF-204ENST00000412568 RPRD2Q5VT52 1461 aaKnown RBP14.18□□□□□ -0.14
PTPRF-204ENST00000412568 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.18□□□□□ -0.14
PTPRF-204ENST00000412568 FANCAO15360 1455 aa14.18□□□□□ -0.14
PTPRF-204ENST00000412568 RUNDC1Q96C34 613 aa14.17□□□□□ -0.14
PTPRF-204ENST00000412568 RBM33Q96EV2 1170 aaKnown RBP14.17□□□□□ -0.14
PTPRF-204ENST00000412568 IPO9Q96P70 1041 aaKnown RBP14.17□□□□□ -0.14
PTPRF-204ENST00000412568 EIF4G3O43432 1585 aaKnown RBP14.17□□□□□ -0.14
PTPRF-204ENST00000412568 DISP1Q96F81 1524 aa14.17□□□□□ -0.14
PTPRF-204ENST00000412568 PANK1Q8TE04 598 aa14.17□□□□□ -0.14
PTPRF-204ENST00000412568 PSME1Q06323 249 aa14.16□□□□□ -0.14
PTPRF-204ENST00000412568 STK31Q9BXU1 1019 aa14.16□□□□□ -0.14
PTPRF-204ENST00000412568 NLRP6P59044 892 aa14.15□□□□□ -0.14
PTPRF-204ENST00000412568 CHMP4BQ9H444 224 aaKnown RBP14.15□□□□□ -0.14
PTPRF-204ENST00000412568 PDE4AP27815 886 aa14.15□□□□□ -0.14
PTPRF-204ENST00000412568 TRAPPC8Q9Y2L5 1435 aa14.15□□□□□ -0.14
PTPRF-204ENST00000412568 SLC4A3P48751 1232 aa14.15□□□□□ -0.14
PTPRF-204ENST00000412568 SLKQ9H2G2 1235 aaPredicted RBP14.15□□□□□ -0.14
PTPRF-204ENST00000412568 CTTNBP2Q8WZ74 1663 aa14.15□□□□□ -0.15
PTPRF-204ENST00000412568 KIAA0556O60303 1618 aa14.14□□□□□ -0.15
PTPRF-204ENST00000412568 NCLP19338 710 aaKnown RBP14.14□□□□□ -0.15
PTPRF-204ENST00000412568 TSR2Q969E8 191 aaKnown RBP14.13□□□□□ -0.15
PTPRF-204ENST00000412568 MFAP1P55081 439 aaKnown RBP14.13□□□□□ -0.15
PTPRF-204ENST00000412568 CASC1Q6TDU7 716 aa14.13□□□□□ -0.15
PTPRF-204ENST00000412568 WDR62O43379 1518 aa14.12□□□□□ -0.15
PTPRF-204ENST00000412568 BCAR3O75815 825 aa14.12□□□□□ -0.15
PTPRF-204ENST00000412568 ZKSCAN2Q63HK3 967 aa14.12□□□□□ -0.15
PTPRF-204ENST00000412568 EIF2S2P20042 333 aaKnown RBP14.12□□□□□ -0.15
PTPRF-204ENST00000412568 PRKAR2BP31323 418 aa14.12□□□□□ -0.15
PTPRF-204ENST00000412568 ASXL2Q76L83 1435 aa14.11□□□□□ -0.15
PTPRF-204ENST00000412568 RRS1Q15050 365 aaKnown RBP14.11□□□□□ -0.15
PTPRF-204ENST00000412568 SYCP2Q9BX26 1530 aa14.11□□□□□ -0.15
PTPRF-204ENST00000412568 LMOD3Q0VAK6 560 aa14.11□□□□□ -0.15
PTPRF-204ENST00000412568 FBLN1P23142 703 aa14.1□□□□□ -0.15
PTPRF-204ENST00000412568 NGEFQ8N5V2 710 aa14.1□□□□□ -0.15
PTPRF-204ENST00000412568 PLCH2O75038 1416 aa14.1□□□□□ -0.15
PTPRF-204ENST00000412568 HSP90AB1P08238 724 aaKnown RBP14.1□□□□□ -0.15
PTPRF-204ENST00000412568 CCDC9Q9Y3X0 531 aaKnown RBP14.1□□□□□ -0.15
PTPRF-204ENST00000412568 FANCIQ9NVI1 1328 aa14.09□□□□□ -0.15
PTPRF-204ENST00000412568 KCNJ4P48050 445 aa14.09□□□□□ -0.15
PTPRF-204ENST00000412568 DISP3Q9P2K9 1392 aa14.09□□□□□ -0.15
PTPRF-204ENST00000412568 XPCQ01831 940 aaPredicted RBP14.08□□□□□ -0.15
PTPRF-204ENST00000412568 DHX29Q7Z478 1369 aaKnown RBP14.08□□□□□ -0.16
PTPRF-204ENST00000412568 ABCA5Q8WWZ7 1642 aa14.08□□□□□ -0.16
PTPRF-204ENST00000412568 ESCO1Q5FWF5 840 aa14.08□□□□□ -0.16
PTPRF-204ENST00000412568 ABTB2Q8N961 1025 aa14.08□□□□□ -0.16
PTPRF-204ENST00000412568 NUP160Q12769 1436 aa14.08□□□□□ -0.16
PTPRF-204ENST00000412568 MAGI3Q5TCQ9 1506 aa14.08□□□□□ -0.16
PTPRF-204ENST00000412568 CENPQQ7L2Z9 268 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-204ENST00000412568 NPHP1O15259 732 aa14.08□□□□□ -0.16
PTPRF-204ENST00000412568 ANKRD45Q5TZF3 282 aa14.07□□□□□ -0.16
PTPRF-204ENST00000412568 TRIM44Q96DX7 344 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-204ENST00000412568 EXOSC9Q06265 439 aaKnown RBP14.07□□□□□ -0.16
PTPRF-204ENST00000412568 NOS1P29475 1434 aa14.07□□□□□ -0.16
PTPRF-204ENST00000412568 TEFQ10587 303 aa14.07□□□□□ -0.16
PTPRF-204ENST00000412568 DZIP1LQ8IYY4 767 aaKnown RBP14.07□□□□□ -0.16
PTPRF-204ENST00000412568 SKAP1Q86WV1 359 aa14.05□□□□□ -0.16
PTPRF-204ENST00000412568 ZNF428Q96B54 188 aa14.05□□□□□ -0.16
PTPRF-204ENST00000412568 CHMP3Q9Y3E7 222 aa14.05□□□□□ -0.16
PTPRF-204ENST00000412568 NSD3Q9BZ95 1437 aa14.05□□□□□ -0.16
PTPRF-204ENST00000412568 SULT6B1Q6IMI4 303 aa14.05□□□□□ -0.16
PTPRF-204ENST00000412568 THEMISQ8N1K5 641 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-204ENST00000412568 THUMPD2Q9BTF0 503 aaKnown RBP14.05□□□□□ -0.16
PTPRF-204ENST00000412568 FOXD4L1Q9NU39 408 aa14.05□□□□□ -0.16
PTPRF-204ENST00000412568 RPGRIP1LQ68CZ1 1315 aa14.04□□□□□ -0.16
PTPRF-204ENST00000412568 CFAP43Q8NDM7 1665 aa14.04□□□□□ -0.16
PTPRF-204ENST00000412568 NAP1L5Q96NT1 182 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-204ENST00000412568 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-204ENST00000412568 NAP1L2Q9ULW6 460 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-204ENST00000412568 TRIM6-TRIM34B2RNG4 842 aa14.03□□□□□ -0.16
PTPRF-204ENST00000412568 HSCBQ8IWL3 235 aa14.03□□□□□ -0.16
PTPRF-204ENST00000412568 RTEL1-TNFRSF6BF6WH68 1400 aa14.03□□□□□ -0.16
PTPRF-204ENST00000412568 PROSER2Q86WR7 435 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-204ENST00000412568 NUDT16Q96DE0 195 aaKnown RBP14.03□□□□□ -0.16
PTPRF-204ENST00000412568 DENND4BO75064 1496 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-204ENST00000412568 TCOF1Q13428 1488 aaKnown RBP14.03□□□□□ -0.16
PTPRF-204ENST00000412568 TSPYL4Q9UJ04 414 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms