RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 BEGAINQ9BUH8 593 aa8.37□□□□□ -1.07
BRCA1-204ENST00000412061 RSPH6AQ9H0K4 717 aa8.37□□□□□ -1.07
BRCA1-204ENST00000412061 SH3D19Q5HYK7 790 aa8.36□□□□□ -1.07
BRCA1-204ENST00000412061 PACS2Q86VP3 889 aa8.36□□□□□ -1.07
BRCA1-204ENST00000412061 KCTD12Q96CX2 325 aaKnown RBP8.36□□□□□ -1.07
BRCA1-204ENST00000412061 KCNK17Q96T54 332 aa8.36□□□□□ -1.07
BRCA1-204ENST00000412061 EYA1Q99502 592 aa8.36□□□□□ -1.07
BRCA1-204ENST00000412061 RCCD1A6NED2 376 aa8.35□□□□□ -1.07
BRCA1-204ENST00000412061 ONECUT3O60422 494 aaPredicted RBP8.35□□□□□ -1.07
BRCA1-204ENST00000412061 NUDT18Q6ZVK8 323 aa8.35□□□□□ -1.07
BRCA1-204ENST00000412061 PNMA3Q9UL41 463 aa8.35□□□□□ -1.07
BRCA1-204ENST00000412061 DNAJB2P25686 324 aa8.34□□□□□ -1.07
BRCA1-204ENST00000412061 TATDN2Q93075 761 aa8.34□□□□□ -1.07
BRCA1-204ENST00000412061 SKIV2LQ15477 1246 aaKnown RBP8.32□□□□□ -1.08
BRCA1-204ENST00000412061 PROX2Q3B8N5 592 aa8.32□□□□□ -1.08
BRCA1-204ENST00000412061 C3orf80F5H4A9 247 aa8.31□□□□□ -1.08
BRCA1-204ENST00000412061 DIXDC1Q155Q3 683 aa8.31□□□□□ -1.08
BRCA1-204ENST00000412061 SULF1Q8IWU6 871 aa8.31□□□□□ -1.08
BRCA1-204ENST00000412061 ZBED2Q9BTP6 218 aa8.3□□□□□ -1.08
BRCA1-204ENST00000412061 TMEM134Q9H6X4 195 aa8.3□□□□□ -1.08
BRCA1-204ENST00000412061 VPS9D1Q9Y2B5 631 aa8.3□□□□□ -1.08
BRCA1-204ENST00000412061 ATP1B4Q9UN42 357 aaPredicted RBP8.29□□□□□ -1.08
BRCA1-204ENST00000412061 SMAPO00193 183 aa8.29□□□□□ -1.08
BRCA1-204ENST00000412061 CD46P15529 392 aa8.29□□□□□ -1.08
BRCA1-204ENST00000412061 FLIIQ13045 1269 aa8.29□□□□□ -1.08
BRCA1-204ENST00000412061 MYSM1Q5VVJ2 828 aa8.29□□□□□ -1.08
BRCA1-204ENST00000412061 KIAA1468Q9P260 1216 aa8.29□□□□□ -1.08
BRCA1-204ENST00000412061 DDX11L8A8MPP1 907 aa8.28□□□□□ -1.08
BRCA1-204ENST00000412061 PTPN5P54829 565 aa8.28□□□□□ -1.08
BRCA1-204ENST00000412061 STAC3Q96MF2 364 aa8.28□□□□□ -1.08
BRCA1-204ENST00000412061 SLC4A5Q9BY07 1137 aa8.28□□□□□ -1.08
BRCA1-204ENST00000412061 TBC1D2Q9BYX2 928 aa8.28□□□□□ -1.08
BRCA1-204ENST00000412061 POLR3EQ9NVU0 708 aa8.28□□□□□ -1.08
BRCA1-204ENST00000412061 CLK2P49760 499 aaKnown RBP8.27□□□□□ -1.09
BRCA1-204ENST00000412061 RABGEF1Q9UJ41 708 aa8.27□□□□□ -1.09
BRCA1-204ENST00000412061 ZMYND15Q9H091 742 aa8.26□□□□□ -1.09
BRCA1-204ENST00000412061 NUTM1Q86Y26 1132 aa8.25□□□□□ -1.09
BRCA1-204ENST00000412061 PROCA1Q8NCQ7 364 aaPredicted RBP8.25□□□□□ -1.09
BRCA1-204ENST00000412061 SPIRE2Q8WWL2 714 aa8.25□□□□□ -1.09
BRCA1-204ENST00000412061 SUPT5HO00267 1087 aaKnown RBP8.24□□□□□ -1.09
BRCA1-204ENST00000412061 RSPH4AQ5TD94 716 aa8.24□□□□□ -1.09
BRCA1-204ENST00000412061 RDH13Q8NBN7 331 aa8.24□□□□□ -1.09
BRCA1-204ENST00000412061 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.24□□□□□ -1.09
BRCA1-204ENST00000412061 BHMG1C9JSJ3 638 aaPredicted RBP8.23□□□□□ -1.09
BRCA1-204ENST00000412061 HDGFP51858 240 aaKnown RBP8.22□□□□□ -1.09
BRCA1-204ENST00000412061 THSD4Q6ZMP0 1018 aa8.22□□□□□ -1.09
BRCA1-204ENST00000412061 RIC3Q7Z5B4 369 aa8.22□□□□□ -1.09
BRCA1-204ENST00000412061 SEPT9Q9UHD8 586 aaPredicted RBP8.22□□□□□ -1.09
BRCA1-204ENST00000412061 SLC4A3P48751 1232 aa8.21□□□□□ -1.1
BRCA1-204ENST00000412061 FAM98CQ17RN3 349 aaKnown RBP8.21□□□□□ -1.1
BRCA1-204ENST00000412061 TUSC1Q2TAM9 212 aa8.21□□□□□ -1.1
BRCA1-204ENST00000412061 SWT1Q5T5J6 900 aaKnown RBP8.21□□□□□ -1.1
BRCA1-204ENST00000412061 LIMD1Q9UGP4 676 aa8.21□□□□□ -1.1
BRCA1-204ENST00000412061 SPTLC1O15269 473 aa8.2□□□□□ -1.1
BRCA1-204ENST00000412061 NBPF3Q9H094 633 aa8.2□□□□□ -1.1
BRCA1-204ENST00000412061 KDM4AO75164 1064 aa8.19□□□□□ -1.1
BRCA1-204ENST00000412061 GJA5P36382 358 aa8.19□□□□□ -1.1
BRCA1-204ENST00000412061 RSBN1LQ6PCB5 846 aaPredicted RBP8.19□□□□□ -1.1
BRCA1-204ENST00000412061 LAPTM4BQ86VI4 370 aa8.19□□□□□ -1.1
BRCA1-204ENST00000412061 PODXL2Q9NZ53 605 aa8.19□□□□□ -1.1
BRCA1-204ENST00000412061 MOXD2PA6NHM9 499 aa8.18□□□□□ -1.1
BRCA1-204ENST00000412061 GCGRP47871 477 aa8.18□□□□□ -1.1
BRCA1-204ENST00000412061 USP46P62068 366 aa8.18□□□□□ -1.1
BRCA1-204ENST00000412061 MCM6Q14566 821 aa8.18□□□□□ -1.1
BRCA1-204ENST00000412061 RFC5P40937 340 aa8.17□□□□□ -1.1
BRCA1-204ENST00000412061 IFFO2Q5TF58 517 aa8.17□□□□□ -1.1
BRCA1-204ENST00000412061 PPP2R2DQ66LE6 453 aa8.17□□□□□ -1.1
BRCA1-204ENST00000412061 SLF2Q8IX21 1173 aa8.17□□□□□ -1.1
BRCA1-204ENST00000412061 WNT2BQ93097 391 aa8.17□□□□□ -1.1
BRCA1-204ENST00000412061 SLC10A3P09131 477 aa8.16□□□□□ -1.1
BRCA1-204ENST00000412061 UBTFP17480 764 aaKnown RBP8.16□□□□□ -1.1
BRCA1-204ENST00000412061 RANGAP1P46060 587 aaPredicted RBP8.16□□□□□ -1.1
BRCA1-204ENST00000412061 MRPL50Q8N5N7 158 aaKnown RBP8.16□□□□□ -1.1
BRCA1-204ENST00000412061 NDUFV2P19404 249 aa8.15□□□□□ -1.1
BRCA1-204ENST00000412061 TMEM259Q4ZIN3 620 aa8.15□□□□□ -1.1
BRCA1-204ENST00000412061 SAMD7Q7Z3H4 446 aa8.15□□□□□ -1.1
BRCA1-204ENST00000412061 BANK1Q8NDB2 785 aa8.15□□□□□ -1.1
BRCA1-204ENST00000412061 A0A0G2JS52 829 aa8.14□□□□□ -1.11
BRCA1-204ENST00000412061 SPDYE5A6NIY4 337 aa8.14□□□□□ -1.11
BRCA1-204ENST00000412061 GOLGA8CPA6NN73 597 aa8.14□□□□□ -1.11
BRCA1-204ENST00000412061 HOXA2O43364 376 aa8.14□□□□□ -1.11
BRCA1-204ENST00000412061 CSPP1Q1MSJ5 1256 aa8.14□□□□□ -1.11
BRCA1-204ENST00000412061 A6NJR5 290 aa8.13□□□□□ -1.11
BRCA1-204ENST00000412061 LILRB3O75022 631 aa8.13□□□□□ -1.11
BRCA1-204ENST00000412061 PRPF38BQ5VTL8 546 aaKnown RBP8.13□□□□□ -1.11
BRCA1-204ENST00000412061 RNF40O75150 1001 aa8.12□□□□□ -1.11
BRCA1-204ENST00000412061 FDX1P10109 184 aa8.12□□□□□ -1.11
BRCA1-204ENST00000412061 FBXO31Q5XUX0 539 aaPredicted RBP8.12□□□□□ -1.11
BRCA1-204ENST00000412061 ZFRQ96KR1 1074 aaKnown RBP8.12□□□□□ -1.11
BRCA1-204ENST00000412061 PCDHB15Q9Y5E8 787 aa8.12□□□□□ -1.11
BRCA1-204ENST00000412061 NUTM2BA6NNL0 878 aaPredicted RBP8.11□□□□□ -1.11
BRCA1-204ENST00000412061 NUTM2EB1AL46 878 aaPredicted RBP8.11□□□□□ -1.11
BRCA1-204ENST00000412061 RGS20O76081 388 aa8.11□□□□□ -1.11
BRCA1-204ENST00000412061 CFHP08603 1231 aa8.11□□□□□ -1.11
BRCA1-204ENST00000412061 QPCTQ16769 361 aa8.11□□□□□ -1.11
BRCA1-204ENST00000412061 GRIPAP1Q4V328 841 aa8.11□□□□□ -1.11
BRCA1-204ENST00000412061 NUTM2DQ5VT03 806 aaPredicted RBP8.11□□□□□ -1.11
BRCA1-204ENST00000412061 NUTM2AQ8IVF1 878 aaPredicted RBP8.11□□□□□ -1.11
BRCA1-204ENST00000412061 NECTIN2Q92692 538 aa8.11□□□□□ -1.11
BRCA1-204ENST00000412061 CLUAP1Q96AJ1 413 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms