RNA–Protein interactions for RNA: ENST00000411690.2

LINC00396-201, long intergenic non-protein coding RNA 396, humanhuman

TSL 3 BASIC

Gene LINC00396, Length 439 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00396-201ENST00000411690 VWDEQ8N2E2 1590 aa10.69□□□□□ -0.7
LINC00396-201ENST00000411690 NEURL4Q96JN8 1562 aa10.69□□□□□ -0.7
LINC00396-201ENST00000411690 ITSN2Q9NZM3 1697 aa10.68□□□□□ -0.7
LINC00396-201ENST00000411690 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.66□□□□□ -0.7
LINC00396-201ENST00000411690 SPAG9O60271 1321 aaKnown RBP10.66□□□□□ -0.7
LINC00396-201ENST00000411690 THEMISQ8N1K5 641 aaPredicted RBP10.66□□□□□ -0.7
LINC00396-201ENST00000411690 FAM212AQ96EL1 285 aa10.66□□□□□ -0.7
LINC00396-201ENST00000411690 LRRC7Q96NW7 1537 aa10.65□□□□□ -0.7
LINC00396-201ENST00000411690 MMRN1Q13201 1228 aa10.65□□□□□ -0.7
LINC00396-201ENST00000411690 NPHP4O75161 1426 aaPredicted RBP10.65□□□□□ -0.7
LINC00396-201ENST00000411690 FMN1Q68DA7 1419 aa10.65□□□□□ -0.7
LINC00396-201ENST00000411690 SAMD9LQ8IVG5 1584 aa10.65□□□□□ -0.71
LINC00396-201ENST00000411690 UPF1Q92900 1129 aaKnown RBP eCLIP10.64□□□□□ -0.71
LINC00396-201ENST00000411690 ZBTB47Q9UFB7 747 aaPredicted RBP10.64□□□□□ -0.71
LINC00396-201ENST00000411690 ZNF777Q9ULD5 760 aaPredicted RBP10.64□□□□□ -0.71
LINC00396-201ENST00000411690 PREX2Q70Z35 1606 aa10.64□□□□□ -0.71
LINC00396-201ENST00000411690 RNF17Q9BXT8 1623 aaKnown RBP10.64□□□□□ -0.71
LINC00396-201ENST00000411690 SETD1AO15047 1707 aaKnown RBP10.64□□□□□ -0.71
LINC00396-201ENST00000411690 A2MP01023 1474 aa10.63□□□□□ -0.71
LINC00396-201ENST00000411690 FBXO31Q5XUX0 539 aaPredicted RBP10.63□□□□□ -0.71
LINC00396-201ENST00000411690 TNRQ92752 1358 aa10.63□□□□□ -0.71
LINC00396-201ENST00000411690 MED14O60244 1454 aa10.62□□□□□ -0.71
LINC00396-201ENST00000411690 HNRNPMP52272 730 aaKnown RBP eCLIP10.62□□□□□ -0.71
LINC00396-201ENST00000411690 SPNS2Q8IVW8 549 aa10.62□□□□□ -0.71
LINC00396-201ENST00000411690 PLXNC1O60486 1568 aa10.61□□□□□ -0.71
LINC00396-201ENST00000411690 MARVELD3Q96A59 401 aa10.61□□□□□ -0.71
LINC00396-201ENST00000411690 ATP7AQ04656 1500 aa10.6□□□□□ -0.71
LINC00396-201ENST00000411690 DEPDC5O75140 1603 aa10.6□□□□□ -0.71
LINC00396-201ENST00000411690 OCEL1Q9H607 264 aa10.6□□□□□ -0.71
LINC00396-201ENST00000411690 SYNMO15061 1565 aa10.6□□□□□ -0.71
LINC00396-201ENST00000411690 STRCP1A6NGW2 1772 aa10.6□□□□□ -0.71
LINC00396-201ENST00000411690 FAM135AQ9P2D6 1515 aa10.59□□□□□ -0.71
LINC00396-201ENST00000411690 PYGBP11216 843 aa10.59□□□□□ -0.71
LINC00396-201ENST00000411690 TMEM121BQ9BXQ6 578 aaPredicted RBP10.59□□□□□ -0.71
LINC00396-201ENST00000411690 FAM135BQ49AJ0 1406 aa10.58□□□□□ -0.72
LINC00396-201ENST00000411690 IQGAP1P46940 1657 aa10.58□□□□□ -0.72
LINC00396-201ENST00000411690 UGGT1Q9NYU2 1555 aa10.58□□□□□ -0.72
LINC00396-201ENST00000411690 SYCP2Q9BX26 1530 aa10.58□□□□□ -0.72
LINC00396-201ENST00000411690 PCDHB8Q9UN66 801 aa10.57□□□□□ -0.72
LINC00396-201ENST00000411690 MIA2Q96PC5 1412 aa10.57□□□□□ -0.72
LINC00396-201ENST00000411690 NLRP1Q9C000 1473 aa10.56□□□□□ -0.72
LINC00396-201ENST00000411690 CDC42BPAQ5VT25 1732 aa10.56□□□□□ -0.72
LINC00396-201ENST00000411690 TRIM52Q96A61 297 aa10.56□□□□□ -0.72
LINC00396-201ENST00000411690 PZPP20742 1482 aa10.55□□□□□ -0.72
LINC00396-201ENST00000411690 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.55□□□□□ -0.72
LINC00396-201ENST00000411690 EEA1Q15075 1411 aa10.55□□□□□ -0.72
LINC00396-201ENST00000411690 INO80Q9ULG1 1556 aaPredicted RBP10.55□□□□□ -0.72
LINC00396-201ENST00000411690 LRRIQ1Q96JM4 1722 aa10.54□□□□□ -0.72
LINC00396-201ENST00000411690 KIAA1107Q9UPP5 1409 aa10.54□□□□□ -0.72
LINC00396-201ENST00000411690 ARHGAP35Q9NRY4 1499 aa10.54□□□□□ -0.72
LINC00396-201ENST00000411690 WASHC2CQ9Y4E1 1318 aa10.54□□□□□ -0.72
LINC00396-201ENST00000411690 ADGBQ8N7X0 1667 aa10.53□□□□□ -0.72
LINC00396-201ENST00000411690 KIF3BO15066 747 aa10.53□□□□□ -0.72
LINC00396-201ENST00000411690 UBTFP17480 764 aaKnown RBP10.52□□□□□ -0.73
LINC00396-201ENST00000411690 DCAF8Q5TAQ9 597 aa10.52□□□□□ -0.73
LINC00396-201ENST00000411690 ZNF772Q68DY9 489 aaPredicted RBP10.52□□□□□ -0.73
LINC00396-201ENST00000411690 PDCD7Q8N8D1 485 aaKnown RBP10.52□□□□□ -0.73
LINC00396-201ENST00000411690 CFDP1Q9UEE9 299 aaPredicted RBP10.52□□□□□ -0.73
LINC00396-201ENST00000411690 PLEKHH2Q8IVE3 1493 aa10.52□□□□□ -0.73
LINC00396-201ENST00000411690 GPATCH8Q9UKJ3 1502 aaKnown RBP10.52□□□□□ -0.73
LINC00396-201ENST00000411690 SNPHO15079 494 aa10.51□□□□□ -0.73
LINC00396-201ENST00000411690 KDM5DQ9BY66 1539 aa10.51□□□□□ -0.73
LINC00396-201ENST00000411690 DHX29Q7Z478 1369 aaKnown RBP10.51□□□□□ -0.73
LINC00396-201ENST00000411690 CCDC18Q5T9S5 1454 aa10.5□□□□□ -0.73
LINC00396-201ENST00000411690 XIRP1Q702N8 1843 aaKnown RBP10.5□□□□□ -0.73
LINC00396-201ENST00000411690 ROBO1Q9Y6N7 1651 aa10.5□□□□□ -0.73
LINC00396-201ENST00000411690 JCADQ9P266 1359 aa10.5□□□□□ -0.73
LINC00396-201ENST00000411690 RXRBP28702 533 aa10.49□□□□□ -0.73
LINC00396-201ENST00000411690 MEX3CQ5U5Q3 659 aaKnown RBP10.49□□□□□ -0.73
LINC00396-201ENST00000411690 ZC3H13Q5T200 1668 aaKnown RBP10.49□□□□□ -0.73
LINC00396-201ENST00000411690 TXNDC2Q86VQ3 553 aa10.48□□□□□ -0.73
LINC00396-201ENST00000411690 POTEB3A0JP26 581 aa10.47□□□□□ -0.73
LINC00396-201ENST00000411690 LTKP29376 864 aa10.47□□□□□ -0.73
LINC00396-201ENST00000411690 POTEBQ6S5H4 581 aa10.47□□□□□ -0.73
LINC00396-201ENST00000411690 TMEM94Q12767 1356 aa10.47□□□□□ -0.73
LINC00396-201ENST00000411690 RTEL1-TNFRSF6BF6WH68 1400 aa10.47□□□□□ -0.73
LINC00396-201ENST00000411690 SCAF11Q99590 1463 aaKnown RBP10.47□□□□□ -0.73
LINC00396-201ENST00000411690 LRRC9Q6ZRR7 1453 aa10.45□□□□□ -0.74
LINC00396-201ENST00000411690 CASKIN1Q8WXD9 1431 aa10.45□□□□□ -0.74
LINC00396-201ENST00000411690 CCNB3Q8WWL7 1395 aa10.45□□□□□ -0.74
LINC00396-201ENST00000411690 SPATA31A6Q5VVP1 1343 aa10.45□□□□□ -0.74
LINC00396-201ENST00000411690 EMP3P54852 163 aa10.45□□□□□ -0.74
LINC00396-201ENST00000411690 FKBP8Q14318 412 aa10.45□□□□□ -0.74
LINC00396-201ENST00000411690 PROSER2Q86WR7 435 aaPredicted RBP10.45□□□□□ -0.74
LINC00396-201ENST00000411690 KRTAP3-3Q9BYR6 98 aa10.45□□□□□ -0.74
LINC00396-201ENST00000411690 KRTAP3-2Q9BYR7 98 aa10.45□□□□□ -0.74
LINC00396-201ENST00000411690 EID1Q9Y6B2 187 aa10.45□□□□□ -0.74
LINC00396-201ENST00000411690 PHLPP1O60346 1717 aa10.44□□□□□ -0.74
LINC00396-201ENST00000411690 ZNF644Q9H582 1327 aaPredicted RBP10.44□□□□□ -0.74
LINC00396-201ENST00000411690 RBM33Q96EV2 1170 aaKnown RBP10.44□□□□□ -0.74
LINC00396-201ENST00000411690 SLAIN2Q9P270 581 aa10.44□□□□□ -0.74
LINC00396-201ENST00000411690 C3orf67Q6ZVT6 689 aa10.43□□□□□ -0.74
LINC00396-201ENST00000411690 LRP6O75581 1613 aa10.43□□□□□ -0.74
LINC00396-201ENST00000411690 CDK12Q9NYV4 1490 aaPredicted RBP10.42□□□□□ -0.74
LINC00396-201ENST00000411690 KCNA6P17658 529 aa10.42□□□□□ -0.74
LINC00396-201ENST00000411690 MBD5Q9P267 1494 aa10.42□□□□□ -0.74
LINC00396-201ENST00000411690 MSH6P52701 1360 aa10.41□□□□□ -0.74
LINC00396-201ENST00000411690 HS3ST6Q96QI5 342 aa10.41□□□□□ -0.74
LINC00396-201ENST00000411690 MAP3K1Q13233 1512 aa10.41□□□□□ -0.74
LINC00396-201ENST00000411690 UBR1Q8IWV7 1749 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms