RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 SEPT9Q9UHD8 586 aaPredicted RBP11.64□□□□□ -0.55
USP40-202ENST00000409945 TMEM134Q9H6X4 195 aa11.63□□□□□ -0.55
USP40-202ENST00000409945 CECR2Q9BXF3 1484 aa11.63□□□□□ -0.55
USP40-202ENST00000409945 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.62□□□□□ -0.55
USP40-202ENST00000409945 DAXXQ9UER7 740 aaPredicted RBP11.62□□□□□ -0.55
USP40-202ENST00000409945 DDX11L8A8MPP1 907 aa11.61□□□□□ -0.55
USP40-202ENST00000409945 TBC1D2Q9BYX2 928 aa11.61□□□□□ -0.55
USP40-202ENST00000409945 NBPF26B4DH59 902 aa11.6□□□□□ -0.55
USP40-202ENST00000409945 EMP3P54852 163 aa11.6□□□□□ -0.55
USP40-202ENST00000409945 FAM205CA6NFA0 338 aa11.6□□□□□ -0.55
USP40-202ENST00000409945 CD46P15529 392 aa11.6□□□□□ -0.55
USP40-202ENST00000409945 LIMD1Q9UGP4 676 aa11.6□□□□□ -0.55
USP40-202ENST00000409945 DNAJB2P25686 324 aa11.59□□□□□ -0.55
USP40-202ENST00000409945 PACS2Q86VP3 889 aa11.59□□□□□ -0.55
USP40-202ENST00000409945 SKIV2LQ15477 1246 aaKnown RBP11.58□□□□□ -0.55
USP40-202ENST00000409945 SPIRE2Q8WWL2 714 aa11.58□□□□□ -0.56
USP40-202ENST00000409945 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.58□□□□□ -0.56
USP40-202ENST00000409945 ARHGAP33O14559 1287 aa11.57□□□□□ -0.56
USP40-202ENST00000409945 PCMTD1Q96MG8 357 aaPredicted RBP11.57□□□□□ -0.56
USP40-202ENST00000409945 FAM163AQ96GL9 167 aaPredicted RBP11.55□□□□□ -0.56
USP40-202ENST00000409945 SLC10A3P09131 477 aa11.54□□□□□ -0.56
USP40-202ENST00000409945 HLA-CQ95604 372 aa11.54□□□□□ -0.56
USP40-202ENST00000409945 SWT1Q5T5J6 900 aaKnown RBP11.54□□□□□ -0.56
USP40-202ENST00000409945 VPS9D1Q9Y2B5 631 aa11.54□□□□□ -0.56
USP40-202ENST00000409945 MOXD2PA6NHM9 499 aa11.53□□□□□ -0.56
USP40-202ENST00000409945 NDUFV2P19404 249 aa11.53□□□□□ -0.56
USP40-202ENST00000409945 CLK2P49760 499 aaKnown RBP11.53□□□□□ -0.56
USP40-202ENST00000409945 HS3ST6Q96QI5 342 aa11.53□□□□□ -0.56
USP40-202ENST00000409945 RABGEF1Q9UJ41 708 aa11.52□□□□□ -0.56
USP40-202ENST00000409945 QPCTQ16769 361 aa11.52□□□□□ -0.57
USP40-202ENST00000409945 RSPH6AQ9H0K4 717 aa11.52□□□□□ -0.57
USP40-202ENST00000409945 ERICH6Q7L0X2 663 aa11.51□□□□□ -0.57
USP40-202ENST00000409945 PCDHB15Q9Y5E8 787 aa11.51□□□□□ -0.57
USP40-202ENST00000409945 CSPP1Q1MSJ5 1256 aa11.5□□□□□ -0.57
USP40-202ENST00000409945 ZNF687Q8N1G0 1237 aa11.5□□□□□ -0.57
USP40-202ENST00000409945 MCM6Q14566 821 aa11.5□□□□□ -0.57
USP40-202ENST00000409945 RDH13Q8NBN7 331 aa11.5□□□□□ -0.57
USP40-202ENST00000409945 CLUAP1Q96AJ1 413 aa11.5□□□□□ -0.57
USP40-202ENST00000409945 GUCA2AQ02747 115 aa11.49□□□□□ -0.57
USP40-202ENST00000409945 ZMYND15Q9H091 742 aa11.49□□□□□ -0.57
USP40-202ENST00000409945 ATP1B4Q9UN42 357 aaPredicted RBP11.49□□□□□ -0.57
USP40-202ENST00000409945 C1orf115Q9H7X2 142 aa11.48□□□□□ -0.57
USP40-202ENST00000409945 BAZ1AQ9NRL2 1556 aaPredicted RBP11.48□□□□□ -0.57
USP40-202ENST00000409945 RIC3Q7Z5B4 369 aa11.48□□□□□ -0.57
USP40-202ENST00000409945 KCNH8Q96L42 1107 aa11.48□□□□□ -0.57
USP40-202ENST00000409945 RSBN1LQ6PCB5 846 aaPredicted RBP11.47□□□□□ -0.57
USP40-202ENST00000409945 SAMD7Q7Z3H4 446 aa11.47□□□□□ -0.57
USP40-202ENST00000409945 SULF1Q8IWU6 871 aa11.47□□□□□ -0.57
USP40-202ENST00000409945 BHMG1C9JSJ3 638 aaPredicted RBP11.47□□□□□ -0.57
USP40-202ENST00000409945 POM121Q96HA1 1249 aa11.47□□□□□ -0.57
USP40-202ENST00000409945 SLC4A5Q9BY07 1137 aa11.47□□□□□ -0.57
USP40-202ENST00000409945 SMARCA4P51532 1647 aa11.46□□□□□ -0.58
USP40-202ENST00000409945 SMARCA2P51531 1590 aa11.45□□□□□ -0.58
USP40-202ENST00000409945 RFC5P40937 340 aa11.45□□□□□ -0.58
USP40-202ENST00000409945 SNRKQ9NRH2 765 aa11.45□□□□□ -0.58
USP40-202ENST00000409945 SPTLC1O15269 473 aa11.44□□□□□ -0.58
USP40-202ENST00000409945 GCGRP47871 477 aa11.44□□□□□ -0.58
USP40-202ENST00000409945 FAM98CQ17RN3 349 aaKnown RBP11.44□□□□□ -0.58
USP40-202ENST00000409945 CABLES1Q8TDN4 633 aa11.44□□□□□ -0.58
USP40-202ENST00000409945 PCDHGC3Q9UN70 934 aa11.44□□□□□ -0.58
USP40-202ENST00000409945 ARID3CA6NKF2 412 aa11.43□□□□□ -0.58
USP40-202ENST00000409945 NUTM1Q86Y26 1132 aa11.43□□□□□ -0.58
USP40-202ENST00000409945 KDM4AO75164 1064 aa11.43□□□□□ -0.58
USP40-202ENST00000409945 PBX2P40425 430 aa11.43□□□□□ -0.58
USP40-202ENST00000409945 RTL5Q5HYW3 569 aaPredicted RBP11.43□□□□□ -0.58
USP40-202ENST00000409945 NCAPD3P42695 1498 aa11.42□□□□□ -0.58
USP40-202ENST00000409945 HOXA2O43364 376 aa11.41□□□□□ -0.58
USP40-202ENST00000409945 LSM11P83369 360 aaKnown RBP eCLIP11.41□□□□□ -0.58
USP40-202ENST00000409945 ATAD2BQ9ULI0 1458 aa11.4□□□□□ -0.58
USP40-202ENST00000409945 FLIIQ13045 1269 aa11.4□□□□□ -0.58
USP40-202ENST00000409945 ZFRQ96KR1 1074 aaKnown RBP11.4□□□□□ -0.58
USP40-202ENST00000409945 RNF40O75150 1001 aa11.39□□□□□ -0.59
USP40-202ENST00000409945 FUT2Q10981 343 aa11.39□□□□□ -0.59
USP40-202ENST00000409945 ADGRD1Q6QNK2 874 aa11.39□□□□□ -0.59
USP40-202ENST00000409945 PPP2R2DQ66LE6 453 aa11.39□□□□□ -0.59
USP40-202ENST00000409945 LILRB3O75022 631 aa11.38□□□□□ -0.59
USP40-202ENST00000409945 HMGXB3Q12766 1538 aa11.37□□□□□ -0.59
USP40-202ENST00000409945 HRO43593 1189 aa11.37□□□□□ -0.59
USP40-202ENST00000409945 DIXDC1Q155Q3 683 aa11.37□□□□□ -0.59
USP40-202ENST00000409945 MTMR14Q8NCE2 650 aa11.37□□□□□ -0.59
USP40-202ENST00000409945 CFHP08603 1231 aa11.36□□□□□ -0.59
USP40-202ENST00000409945 HRCP23327 699 aa11.36□□□□□ -0.59
USP40-202ENST00000409945 SYMPKQ92797 1274 aaKnown RBP11.36□□□□□ -0.59
USP40-202ENST00000409945 BAZ1BQ9UIG0 1483 aaKnown RBP11.36□□□□□ -0.59
USP40-202ENST00000409945 PEG3Q9GZU2 1588 aa11.34□□□□□ -0.59
USP40-202ENST00000409945 FDX1P10109 184 aa11.34□□□□□ -0.59
USP40-202ENST00000409945 UBTFP17480 764 aaKnown RBP11.34□□□□□ -0.59
USP40-202ENST00000409945 PUS10Q3MIT2 529 aaKnown RBP11.33□□□□□ -0.6
USP40-202ENST00000409945 ANKRD13DQ6ZTN6 518 aa11.33□□□□□ -0.6
USP40-202ENST00000409945 MROH2BQ7Z745 1585 aa11.33□□□□□ -0.6
USP40-202ENST00000409945 TK2O00142 265 aa11.33□□□□□ -0.6
USP40-202ENST00000409945 TUSC1Q2TAM9 212 aa11.33□□□□□ -0.6
USP40-202ENST00000409945 NBPF3Q9H094 633 aa11.33□□□□□ -0.6
USP40-202ENST00000409945 LAPTM4BQ86VI4 370 aa11.32□□□□□ -0.6
USP40-202ENST00000409945 MRPL50Q8N5N7 158 aaKnown RBP11.32□□□□□ -0.6
USP40-202ENST00000409945 COG6Q9Y2V7 657 aa11.31□□□□□ -0.6
USP40-202ENST00000409945 AP1G2O75843 785 aa11.31□□□□□ -0.6
USP40-202ENST00000409945 BCAMP50895 628 aa11.31□□□□□ -0.6
USP40-202ENST00000409945 KRTAP3-3Q9BYR6 98 aa11.31□□□□□ -0.6
USP40-202ENST00000409945 KRTAP3-2Q9BYR7 98 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms