RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 VPS8Q8N3P4 1428 aa6.84□□□□□ -1.32
SF3B1-202ENST00000409915 CFAP43Q8NDM7 1665 aa6.84□□□□□ -1.32
SF3B1-202ENST00000409915 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.83□□□□□ -1.32
SF3B1-202ENST00000409915 G3V3G9 751 aa6.83□□□□□ -1.32
SF3B1-202ENST00000409915 CDK11BP21127 795 aaKnown RBP6.83□□□□□ -1.32
SF3B1-202ENST00000409915 L3MBTL3Q96JM7 780 aaPredicted RBP6.83□□□□□ -1.32
SF3B1-202ENST00000409915 MFRPQ9BY79 579 aa6.83□□□□□ -1.32
SF3B1-202ENST00000409915 RYDENQ9NUL5 291 aaKnown RBP6.83□□□□□ -1.32
SF3B1-202ENST00000409915 CDK11AQ9UQ88 783 aaPredicted RBP6.83□□□□□ -1.32
SF3B1-202ENST00000409915 TROQ12816 1431 aaPredicted RBP6.83□□□□□ -1.32
SF3B1-202ENST00000409915 KDM6BO15054 1643 aa6.83□□□□□ -1.32
SF3B1-202ENST00000409915 COL17A1Q9UMD9 1497 aaPredicted RBP6.82□□□□□ -1.32
SF3B1-202ENST00000409915 ZMYND10O75800 440 aa6.82□□□□□ -1.32
SF3B1-202ENST00000409915 HMGB1P09429 215 aaKnown RBP6.82□□□□□ -1.32
SF3B1-202ENST00000409915 FBXO22Q8NEZ5 403 aa6.82□□□□□ -1.32
SF3B1-202ENST00000409915 TEX14Q8IWB6 1497 aa6.81□□□□□ -1.32
SF3B1-202ENST00000409915 CCDC82Q8N4S0 544 aa6.81□□□□□ -1.32
SF3B1-202ENST00000409915 TMEM92Q6UXU6 159 aa6.8□□□□□ -1.32
SF3B1-202ENST00000409915 BOLA1Q9Y3E2 137 aa6.8□□□□□ -1.32
SF3B1-202ENST00000409915 TIAM1Q13009 1591 aa6.79□□□□□ -1.32
SF3B1-202ENST00000409915 RGS22Q8NE09 1264 aa6.79□□□□□ -1.32
SF3B1-202ENST00000409915 EHBP1L1Q8N3D4 1523 aa6.79□□□□□ -1.32
SF3B1-202ENST00000409915 MTUS2Q5JR59 1369 aa6.79□□□□□ -1.32
SF3B1-202ENST00000409915 FANCAO15360 1455 aa6.79□□□□□ -1.32
SF3B1-202ENST00000409915 SNPHO15079 494 aa6.78□□□□□ -1.32
SF3B1-202ENST00000409915 SOX12O15370 315 aa6.78□□□□□ -1.32
SF3B1-202ENST00000409915 ST18O60284 1047 aa6.78□□□□□ -1.32
SF3B1-202ENST00000409915 HSP90B1P14625 803 aaKnown RBP6.78□□□□□ -1.32
SF3B1-202ENST00000409915 CADPS2Q86UW7 1296 aa6.78□□□□□ -1.32
SF3B1-202ENST00000409915 MICALL2Q8IY33 904 aa6.78□□□□□ -1.32
SF3B1-202ENST00000409915 TMEM121BQ9BXQ6 578 aaPredicted RBP6.78□□□□□ -1.32
SF3B1-202ENST00000409915 ARHGAP5Q13017 1502 aa6.77□□□□□ -1.33
SF3B1-202ENST00000409915 MYO5CQ9NQX4 1742 aa6.77□□□□□ -1.33
SF3B1-202ENST00000409915 TESPA1A2RU30 521 aaPredicted RBP6.77□□□□□ -1.33
SF3B1-202ENST00000409915 TRAIPQ9BWF2 469 aa6.77□□□□□ -1.33
SF3B1-202ENST00000409915 KDM4CQ9H3R0 1056 aa6.77□□□□□ -1.33
SF3B1-202ENST00000409915 PCDH10Q9P2E7 1040 aa6.77□□□□□ -1.33
SF3B1-202ENST00000409915 MTMR7Q9Y216 660 aa6.77□□□□□ -1.33
SF3B1-202ENST00000409915 NEO1Q92859 1461 aa6.77□□□□□ -1.33
SF3B1-202ENST00000409915 PLCH2O75038 1416 aa6.76□□□□□ -1.33
SF3B1-202ENST00000409915 PREX2Q70Z35 1606 aa6.76□□□□□ -1.33
SF3B1-202ENST00000409915 SEMA3EO15041 775 aa6.76□□□□□ -1.33
SF3B1-202ENST00000409915 PPP1R37O75864 691 aa6.76□□□□□ -1.33
SF3B1-202ENST00000409915 RAPGEF3O95398 923 aa6.76□□□□□ -1.33
SF3B1-202ENST00000409915 KANK4Q5T7N3 995 aaPredicted RBP6.76□□□□□ -1.33
SF3B1-202ENST00000409915 AEBP1Q8IUX7 1158 aa6.76□□□□□ -1.33
SF3B1-202ENST00000409915 ARHGEF1Q92888 912 aaKnown RBP6.76□□□□□ -1.33
SF3B1-202ENST00000409915 FRMPD1Q5SYB0 1578 aa6.76□□□□□ -1.33
SF3B1-202ENST00000409915 AKNAQ7Z591 1439 aa6.76□□□□□ -1.33
SF3B1-202ENST00000409915 CFAP74Q9C0B2 1584 aa6.75□□□□□ -1.33
SF3B1-202ENST00000409915 ADGRL1O94910 1474 aa6.75□□□□□ -1.33
SF3B1-202ENST00000409915 NCOA2Q15596 1464 aa6.75□□□□□ -1.33
SF3B1-202ENST00000409915 LRRC9Q6ZRR7 1453 aa6.75□□□□□ -1.33
SF3B1-202ENST00000409915 RBM25P49756 843 aaKnown RBP6.75□□□□□ -1.33
SF3B1-202ENST00000409915 TMCO4Q5TGY1 634 aa6.75□□□□□ -1.33
SF3B1-202ENST00000409915 BARGINQ6ZT62 677 aa6.75□□□□□ -1.33
SF3B1-202ENST00000409915 AK7Q96M32 723 aa6.75□□□□□ -1.33
SF3B1-202ENST00000409915 CDC42BPAQ5VT25 1732 aa6.75□□□□□ -1.33
SF3B1-202ENST00000409915 CDC42BPBQ9Y5S2 1711 aa6.75□□□□□ -1.33
SF3B1-202ENST00000409915 ARAP3Q8WWN8 1544 aa6.75□□□□□ -1.33
SF3B1-202ENST00000409915 GPATCH8Q9UKJ3 1502 aaKnown RBP6.75□□□□□ -1.33
SF3B1-202ENST00000409915 CCNB3Q8WWL7 1395 aa6.74□□□□□ -1.33
SF3B1-202ENST00000409915 CDAN1Q8IWY9 1227 aa6.74□□□□□ -1.33
SF3B1-202ENST00000409915 BCL11AQ9H165 835 aa6.74□□□□□ -1.33
SF3B1-202ENST00000409915 ZNF777Q9ULD5 760 aaPredicted RBP6.74□□□□□ -1.33
SF3B1-202ENST00000409915 SCAPERQ9BY12 1400 aa6.74□□□□□ -1.33
SF3B1-202ENST00000409915 DENND4BO75064 1496 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-202ENST00000409915 SUPT6HQ7KZ85 1726 aaKnown RBP6.73□□□□□ -1.33
SF3B1-202ENST00000409915 ABCC1P33527 1531 aa6.73□□□□□ -1.33
SF3B1-202ENST00000409915 MAP3K1Q13233 1512 aa6.73□□□□□ -1.33
SF3B1-202ENST00000409915 NLRP6P59044 892 aa6.73□□□□□ -1.33
SF3B1-202ENST00000409915 FLIIQ13045 1269 aa6.73□□□□□ -1.33
SF3B1-202ENST00000409915 EFCAB2Q5VUJ9 269 aa6.73□□□□□ -1.33
SF3B1-202ENST00000409915 FOXD4L5Q5VV16 416 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-202ENST00000409915 FOXD4L4Q8WXT5 416 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-202ENST00000409915 MARVELD3Q96A59 401 aa6.73□□□□□ -1.33
SF3B1-202ENST00000409915 POGZQ7Z3K3 1410 aa6.73□□□□□ -1.33
SF3B1-202ENST00000409915 SAMD9LQ8IVG5 1584 aa6.73□□□□□ -1.33
SF3B1-202ENST00000409915 SYCP2Q9BX26 1530 aa6.72□□□□□ -1.33
SF3B1-202ENST00000409915 ARHGEF12Q9NZN5 1544 aa6.72□□□□□ -1.33
SF3B1-202ENST00000409915 MFAP1P55081 439 aaKnown RBP6.72□□□□□ -1.33
SF3B1-202ENST00000409915 PPARGC1BQ86YN6 1023 aaKnown RBP6.72□□□□□ -1.33
SF3B1-202ENST00000409915 ZNF428Q96B54 188 aa6.72□□□□□ -1.33
SF3B1-202ENST00000409915 RICTORQ6R327 1708 aa6.72□□□□□ -1.33
SF3B1-202ENST00000409915 ZNF644Q9H582 1327 aaPredicted RBP6.72□□□□□ -1.33
SF3B1-202ENST00000409915 PHLDB1Q86UU1 1377 aa6.71□□□□□ -1.33
SF3B1-202ENST00000409915 YEATS2Q9ULM3 1422 aa6.71□□□□□ -1.34
SF3B1-202ENST00000409915 TRAPPC8Q9Y2L5 1435 aa6.71□□□□□ -1.34
SF3B1-202ENST00000409915 HOXB3P14651 431 aaPredicted RBP6.71□□□□□ -1.34
SF3B1-202ENST00000409915 PUS7Q96PZ0 661 aaKnown RBP6.71□□□□□ -1.34
SF3B1-202ENST00000409915 CFDP1Q9UEE9 299 aaPredicted RBP6.71□□□□□ -1.34
SF3B1-202ENST00000409915 ITSN2Q9NZM3 1697 aa6.71□□□□□ -1.34
SF3B1-202ENST00000409915 ARHGEF40Q8TER5 1519 aa6.71□□□□□ -1.34
SF3B1-202ENST00000409915 AFAP1Q8N556 730 aa6.7□□□□□ -1.34
SF3B1-202ENST00000409915 ZMYM4Q5VZL5 1548 aa6.7□□□□□ -1.34
SF3B1-202ENST00000409915 CAMSAP2Q08AD1 1489 aa6.69□□□□□ -1.34
SF3B1-202ENST00000409915 ZNF518AQ6AHZ1 1483 aa6.69□□□□□ -1.34
SF3B1-202ENST00000409915 TRAK2O60296 914 aa6.69□□□□□ -1.34
SF3B1-202ENST00000409915 HNRNPMP52272 730 aaKnown RBP eCLIP6.69□□□□□ -1.343e-7■■■■□ 24.6
SF3B1-202ENST00000409915 SMYD5Q6GMV2 418 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms