RNA–Protein interactions for RNA: ENST00000409854.5

EPHA4-202, Transcript of EPH receptor A4, humanhuman

TSL 1 (best) BASIC

Gene EPHA4, Length 3,454 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-202ENST00000409854 KDM2AQ9Y2K7 1162 aa7.79□□□□□ -1.16
EPHA4-202ENST00000409854 ROCK2O75116 1388 aaKnown RBP7.79□□□□□ -1.16
EPHA4-202ENST00000409854 ZNF326Q5BKZ1 582 aaKnown RBP7.78□□□□□ -1.16
EPHA4-202ENST00000409854 HIRIP3Q9BW71 556 aaPredicted RBP7.78□□□□□ -1.16
EPHA4-202ENST00000409854 SLC52A1Q9NWF4 448 aa7.78□□□□□ -1.16
EPHA4-202ENST00000409854 RPGRIP1LQ68CZ1 1315 aa7.78□□□□□ -1.16
EPHA4-202ENST00000409854 PIK3C2GO75747 1445 aa7.78□□□□□ -1.16
EPHA4-202ENST00000409854 ZFYVE9O95405 1425 aa7.78□□□□□ -1.16
EPHA4-202ENST00000409854 UBR1Q8IWV7 1749 aa7.78□□□□□ -1.16
EPHA4-202ENST00000409854 WASHC2AQ641Q2 1341 aa7.77□□□□□ -1.17
EPHA4-202ENST00000409854 SETD1AO15047 1707 aaKnown RBP7.76□□□□□ -1.17
EPHA4-202ENST00000409854 ADGRB1O14514 1584 aa7.76□□□□□ -1.17
EPHA4-202ENST00000409854 CCDC7Q96M83 1385 aa7.76□□□□□ -1.17
EPHA4-202ENST00000409854 CARD11Q9BXL7 1154 aa7.76□□□□□ -1.17
EPHA4-202ENST00000409854 ZMYM3Q14202 1370 aa7.76□□□□□ -1.17
EPHA4-202ENST00000409854 ADAMTSL3P82987 1691 aa7.76□□□□□ -1.17
EPHA4-202ENST00000409854 ARID4BQ4LE39 1312 aaPredicted RBP7.75□□□□□ -1.17
EPHA4-202ENST00000409854 NBPF1Q3BBV0 1214 aa7.75□□□□□ -1.17
EPHA4-202ENST00000409854 SCAF11Q99590 1463 aaKnown RBP7.75□□□□□ -1.17
EPHA4-202ENST00000409854 IDI1Q13907 227 aa7.75□□□□□ -1.17
EPHA4-202ENST00000409854 A2ML1A8K2U0 1454 aa7.75□□□□□ -1.17
EPHA4-202ENST00000409854 ARHGEF28Q8N1W1 1705 aaKnown RBP7.75□□□□□ -1.17
EPHA4-202ENST00000409854 C11orf95C9JLR9 678 aaPredicted RBP7.75□□□□□ -1.17
EPHA4-202ENST00000409854 ADGRF5Q8IZF2 1346 aa7.74□□□□□ -1.17
EPHA4-202ENST00000409854 FBXO31Q5XUX0 539 aaPredicted RBP7.74□□□□□ -1.17
EPHA4-202ENST00000409854 RIMS1Q86UR5 1692 aaKnown RBP7.74□□□□□ -1.17
EPHA4-202ENST00000409854 KIF7Q2M1P5 1343 aa7.74□□□□□ -1.17
EPHA4-202ENST00000409854 MLECQ14165 292 aa7.73□□□□□ -1.17
EPHA4-202ENST00000409854 MIER1Q8N108 512 aa7.73□□□□□ -1.17
EPHA4-202ENST00000409854 NRXN3Q9Y4C0 1643 aa7.73□□□□□ -1.17
EPHA4-202ENST00000409854 DDX10Q13206 875 aaKnown RBP7.73□□□□□ -1.17
EPHA4-202ENST00000409854 QRICH2Q9H0J4 1663 aa7.73□□□□□ -1.17
EPHA4-202ENST00000409854 ASXL1Q8IXJ9 1541 aa7.73□□□□□ -1.17
EPHA4-202ENST00000409854 NLRP1Q9C000 1473 aa7.73□□□□□ -1.17
EPHA4-202ENST00000409854 MYOM1P52179 1685 aa7.73□□□□□ -1.17
EPHA4-202ENST00000409854 ST20-MTHFSA0A0A6YYL1 179 aa7.72□□□□□ -1.17
EPHA4-202ENST00000409854 TNRQ92752 1358 aa7.72□□□□□ -1.17
EPHA4-202ENST00000409854 ZNF142P52746 1687 aaPredicted RBP7.72□□□□□ -1.17
EPHA4-202ENST00000409854 ALKQ9UM73 1620 aa7.71□□□□□ -1.17
EPHA4-202ENST00000409854 CHGAP10645 457 aaKnown RBP7.71□□□□□ -1.18
EPHA4-202ENST00000409854 TESK2Q96S53 571 aa7.71□□□□□ -1.18
EPHA4-202ENST00000409854 ESF1Q9H501 851 aaKnown RBP7.71□□□□□ -1.18
EPHA4-202ENST00000409854 C14orf93Q9H972 538 aaKnown RBP7.71□□□□□ -1.18
EPHA4-202ENST00000409854 KNDC1Q76NI1 1749 aa7.71□□□□□ -1.18
EPHA4-202ENST00000409854 EIF3AQ14152 1382 aaKnown RBP7.71□□□□□ -1.18
EPHA4-202ENST00000409854 VGFO15240 615 aaPredicted RBP7.71□□□□□ -1.18
EPHA4-202ENST00000409854 PRKCSHP14314 528 aaPredicted RBP7.71□□□□□ -1.18
EPHA4-202ENST00000409854 SBNO2Q9Y2G9 1366 aa7.7□□□□□ -1.18
EPHA4-202ENST00000409854 CFAP70Q5T0N1 1121 aa7.7□□□□□ -1.18
EPHA4-202ENST00000409854 RIMS2Q9UQ26 1411 aa7.69□□□□□ -1.18
EPHA4-202ENST00000409854 SLIT1O75093 1534 aa7.69□□□□□ -1.18
EPHA4-202ENST00000409854 DISP3Q9P2K9 1392 aa7.69□□□□□ -1.18
EPHA4-202ENST00000409854 PTPRMP28827 1452 aa7.68□□□□□ -1.18
EPHA4-202ENST00000409854 ARHGAP23Q9P227 1491 aa7.68□□□□□ -1.18
EPHA4-202ENST00000409854 DLC1Q96QB1 1528 aa7.68□□□□□ -1.18
EPHA4-202ENST00000409854 DAXXQ9UER7 740 aaPredicted RBP7.67□□□□□ -1.18
EPHA4-202ENST00000409854 CEP170BQ9Y4F5 1589 aaPredicted RBP7.67□□□□□ -1.18
EPHA4-202ENST00000409854 TMEM2Q9UHN6 1383 aa7.66□□□□□ -1.18
EPHA4-202ENST00000409854 SETD1BQ9UPS6 1966 aaKnown RBP7.66□□□□□ -1.18
EPHA4-202ENST00000409854 TMF1P82094 1093 aa7.65□□□□□ -1.18
EPHA4-202ENST00000409854 DIP2AQ14689 1571 aa7.65□□□□□ -1.19
EPHA4-202ENST00000409854 CPS1P31327 1500 aa7.65□□□□□ -1.19
EPHA4-202ENST00000409854 CCER2I3L3R5 266 aa7.65□□□□□ -1.19
EPHA4-202ENST00000409854 ANP32CO43423 234 aa7.65□□□□□ -1.19
EPHA4-202ENST00000409854 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.65□□□□□ -1.19
EPHA4-202ENST00000409854 STAG3Q9UJ98 1225 aa7.65□□□□□ -1.19
EPHA4-202ENST00000409854 YTHDC2Q9H6S0 1430 aaKnown RBP7.65□□□□□ -1.19
EPHA4-202ENST00000409854 TULP4Q9NRJ4 1543 aa7.64□□□□□ -1.19
EPHA4-202ENST00000409854 NUTM2DQ5VT03 806 aaPredicted RBP7.64□□□□□ -1.19
EPHA4-202ENST00000409854 MED14O60244 1454 aa7.64□□□□□ -1.19
EPHA4-202ENST00000409854 CEBPAP49715 358 aaPredicted RBP7.64□□□□□ -1.19
EPHA4-202ENST00000409854 CENPJQ9HC77 1338 aaPredicted RBP7.63□□□□□ -1.19
EPHA4-202ENST00000409854 PLEKHG1Q9ULL1 1385 aa7.63□□□□□ -1.19
EPHA4-202ENST00000409854 TECPR2O15040 1411 aa7.63□□□□□ -1.19
EPHA4-202ENST00000409854 ADAMTS13Q76LX8 1427 aa7.63□□□□□ -1.19
EPHA4-202ENST00000409854 USP32Q8NFA0 1604 aa7.63□□□□□ -1.19
EPHA4-202ENST00000409854 CDCA8Q53HL2 280 aa7.62□□□□□ -1.19
EPHA4-202ENST00000409854 TMEM132EQ6IEE7 984 aa7.62□□□□□ -1.19
EPHA4-202ENST00000409854 LRPPRCP42704 1394 aaKnown RBP7.62□□□□□ -1.19
EPHA4-202ENST00000409854 HDGFP51858 240 aaKnown RBP7.62□□□□□ -1.19
EPHA4-202ENST00000409854 PRKRIP1Q9H875 184 aaPredicted RBP7.62□□□□□ -1.19
EPHA4-202ENST00000409854 KTN1Q86UP2 1357 aaKnown RBP7.61□□□□□ -1.19
EPHA4-202ENST00000409854 TRAK1Q9UPV9 953 aa7.61□□□□□ -1.19
EPHA4-202ENST00000409854 XRN1Q8IZH2 1706 aaKnown RBP7.61□□□□□ -1.19
EPHA4-202ENST00000409854 ABCC11Q96J66 1382 aa7.61□□□□□ -1.19
EPHA4-202ENST00000409854 ADGRB2O60241 1585 aa7.61□□□□□ -1.19
EPHA4-202ENST00000409854 PUS7Q96PZ0 661 aaKnown RBP7.61□□□□□ -1.19
EPHA4-202ENST00000409854 PER1O15534 1290 aaPredicted RBP7.6□□□□□ -1.19
EPHA4-202ENST00000409854 METP08581 1390 aa7.6□□□□□ -1.19
EPHA4-202ENST00000409854 FAM135BQ49AJ0 1406 aa7.6□□□□□ -1.19
EPHA4-202ENST00000409854 POLR3GLQ9BT43 218 aa7.59□□□□□ -1.19
EPHA4-202ENST00000409854 CHD2O14647 1828 aaKnown RBP7.59□□□□□ -1.19
EPHA4-202ENST00000409854 LTKP29376 864 aa7.59□□□□□ -1.19
EPHA4-202ENST00000409854 PARD3Q8TEW0 1356 aa7.59□□□□□ -1.19
EPHA4-202ENST00000409854 ANKRD26Q9UPS8 1709 aa7.59□□□□□ -1.2
EPHA4-202ENST00000409854 THEMISQ8N1K5 641 aaPredicted RBP7.58□□□□□ -1.2
EPHA4-202ENST00000409854 SIRT1Q96EB6 747 aa7.58□□□□□ -1.2
EPHA4-202ENST00000409854 TOPAZ1Q8N9V7 1692 aa7.58□□□□□ -1.2
EPHA4-202ENST00000409854 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.58□□□□□ -1.2
EPHA4-202ENST00000409854 NPC1L1Q9UHC9 1359 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms