RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 DNAJC2Q99543 621 aaKnown RBP15.56■□□□□ 0.08
COL6A3-206ENST00000409809 HSPA5P11021 654 aaKnown RBP15.56■□□□□ 0.08
COL6A3-206ENST00000409809 WWC1Q8IX03 1113 aa15.56■□□□□ 0.08
COL6A3-206ENST00000409809 GBP3Q9H0R5 595 aa15.55■□□□□ 0.08
COL6A3-206ENST00000409809 ANKRD18AQ8IVF6 992 aa15.55■□□□□ 0.08
COL6A3-206ENST00000409809 GOLGA6L10A0A0M3HER8 536 aa15.55■□□□□ 0.08
COL6A3-206ENST00000409809 POGKQ9P215 609 aa15.55■□□□□ 0.08
COL6A3-206ENST00000409809 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.55■□□□□ 0.08
COL6A3-206ENST00000409809 CT47B1P0C2W7 299 aaPredicted RBP15.54■□□□□ 0.08
COL6A3-206ENST00000409809 CARMIL2Q6F5E8 1435 aa15.54■□□□□ 0.08
COL6A3-206ENST00000409809 ESPNB1AK53 854 aa15.54■□□□□ 0.08
COL6A3-206ENST00000409809 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.54■□□□□ 0.08
COL6A3-206ENST00000409809 TSPY26PQ9H489 355 aa15.54■□□□□ 0.08
COL6A3-206ENST00000409809 CIZ1Q9ULV3 898 aaPredicted RBP15.54■□□□□ 0.08
COL6A3-206ENST00000409809 OLFM4Q6UX06 510 aa15.53■□□□□ 0.08
COL6A3-206ENST00000409809 ANO8Q9HCE9 1232 aaPredicted RBP15.53■□□□□ 0.08
COL6A3-206ENST00000409809 PDE4CQ08493 712 aa15.53■□□□□ 0.08
COL6A3-206ENST00000409809 INTS3Q68E01 1043 aaKnown RBP15.53■□□□□ 0.08
COL6A3-206ENST00000409809 UQCRHLA0A096LP55 91 aa15.53■□□□□ 0.08
COL6A3-206ENST00000409809 UQCRHP07919 91 aa15.53■□□□□ 0.08
COL6A3-206ENST00000409809 TRAK2O60296 914 aa15.53■□□□□ 0.08
COL6A3-206ENST00000409809 LUZP1Q86V48 1076 aa15.52■□□□□ 0.07
COL6A3-206ENST00000409809 PDS5BQ9NTI5 1447 aa15.52■□□□□ 0.07
COL6A3-206ENST00000409809 TRIM29Q14134 588 aa15.52■□□□□ 0.07
COL6A3-206ENST00000409809 CWC22Q9HCG8 908 aaKnown RBP15.52■□□□□ 0.07
COL6A3-206ENST00000409809 ZSCAN30Q86W11 494 aa15.52■□□□□ 0.07
COL6A3-206ENST00000409809 AXDND1Q5T1B0 1012 aaPredicted RBP15.51■□□□□ 0.07
COL6A3-206ENST00000409809 AKAP17AQ02040 695 aaKnown RBP15.51■□□□□ 0.07
COL6A3-206ENST00000409809 ZKSCAN2Q63HK3 967 aa15.51■□□□□ 0.07
COL6A3-206ENST00000409809 MICALCLQ6ZW33 695 aa15.51■□□□□ 0.07
COL6A3-206ENST00000409809 BICD2Q8TD16 824 aa15.51■□□□□ 0.07
COL6A3-206ENST00000409809 RAB3GAP2Q9H2M9 1393 aa15.51■□□□□ 0.07
COL6A3-206ENST00000409809 MAP9Q49MG5 647 aa15.5■□□□□ 0.07
COL6A3-206ENST00000409809 HDGFL2Q7Z4V5 671 aaPredicted RBP15.5■□□□□ 0.07
COL6A3-206ENST00000409809 C14orf37Q86TY3 774 aa15.5■□□□□ 0.07
COL6A3-206ENST00000409809 ABCC8Q09428 1581 aa15.5■□□□□ 0.07
COL6A3-206ENST00000409809 TOP2AP11388 1531 aaKnown RBP15.49■□□□□ 0.07
COL6A3-206ENST00000409809 DYNC1I1O14576 645 aa15.49■□□□□ 0.07
COL6A3-206ENST00000409809 SSR1P43307 286 aaKnown RBP15.49■□□□□ 0.07
COL6A3-206ENST00000409809 RGL3Q3MIN7 710 aa15.49■□□□□ 0.07
COL6A3-206ENST00000409809 CGNQ9P2M7 1197 aaKnown RBP15.49■□□□□ 0.07
COL6A3-206ENST00000409809 TTLL5Q6EMB2 1281 aa15.48■□□□□ 0.07
COL6A3-206ENST00000409809 IL27Q8NEV9 243 aa15.48■□□□□ 0.07
COL6A3-206ENST00000409809 EZRP15311 586 aaKnown RBP15.48■□□□□ 0.07
COL6A3-206ENST00000409809 C22orf23Q9BZE7 217 aa15.48■□□□□ 0.07
COL6A3-206ENST00000409809 CCDC192P0DO97 292 aa15.48■□□□□ 0.07
COL6A3-206ENST00000409809 TAF7LQ5H9L4 462 aa15.48■□□□□ 0.07
COL6A3-206ENST00000409809 SIN3AQ96ST3 1273 aa15.48■□□□□ 0.07
COL6A3-206ENST00000409809 UACAQ9BZF9 1416 aa15.48■□□□□ 0.07
COL6A3-206ENST00000409809 SHTN1A0MZ66 631 aa15.47■□□□□ 0.07
COL6A3-206ENST00000409809 NPHP1O15259 732 aa15.47■□□□□ 0.07
COL6A3-206ENST00000409809 SYNE3Q6ZMZ3 975 aa15.47■□□□□ 0.07
COL6A3-206ENST00000409809 DCAF11Q8TEB1 546 aa15.47■□□□□ 0.07
COL6A3-206ENST00000409809 SPATA24Q86W54 205 aa15.47■□□□□ 0.07
COL6A3-206ENST00000409809 SLC26A8Q96RN1 970 aa15.47■□□□□ 0.07
COL6A3-206ENST00000409809 TRIM5Q9C035 493 aa15.47■□□□□ 0.07
COL6A3-206ENST00000409809 GORABQ5T7V8 394 aa15.46■□□□□ 0.07
COL6A3-206ENST00000409809 CREBRFQ8IUR6 639 aa15.46■□□□□ 0.07
COL6A3-206ENST00000409809 TAOK2Q9UL54 1235 aa15.46■□□□□ 0.07
COL6A3-206ENST00000409809 GRPEL1Q9HAV7 217 aa15.46■□□□□ 0.07
COL6A3-206ENST00000409809 KINO60870 393 aaKnown RBP15.45■□□□□ 0.06
COL6A3-206ENST00000409809 PRM3Q9NNZ6 103 aa15.45■□□□□ 0.06
COL6A3-206ENST00000409809 MCTP1Q6DN14 999 aa15.45■□□□□ 0.06
COL6A3-206ENST00000409809 TIGD1Q96MW7 591 aa15.45■□□□□ 0.06
COL6A3-206ENST00000409809 SMC3Q9UQE7 1217 aa15.45■□□□□ 0.06
COL6A3-206ENST00000409809 U2AF1L5P0DN76 240 aaPredicted RBP15.45■□□□□ 0.06
COL6A3-206ENST00000409809 U2AF1Q01081 240 aaKnown RBP eCLIP15.45■□□□□ 0.06
COL6A3-206ENST00000409809 NCBP3Q53F19 620 aaKnown RBP15.45■□□□□ 0.06
COL6A3-206ENST00000409809 SENP3Q9H4L4 574 aaPredicted RBP15.45■□□□□ 0.06
COL6A3-206ENST00000409809 POTEB2H3BUK9 544 aa15.44■□□□□ 0.06
COL6A3-206ENST00000409809 LRRCC1Q9C099 1032 aa15.44■□□□□ 0.06
COL6A3-206ENST00000409809 PCMTD1Q96MG8 357 aaPredicted RBP15.44■□□□□ 0.06
COL6A3-206ENST00000409809 CBFA2T2O43439 604 aa15.44■□□□□ 0.06
COL6A3-206ENST00000409809 GBP2P32456 591 aaPredicted RBP15.43■□□□□ 0.06
COL6A3-206ENST00000409809 IRX3P78415 501 aaPredicted RBP15.43■□□□□ 0.06
COL6A3-206ENST00000409809 FILIP1LQ4L180 1135 aa15.43■□□□□ 0.06
COL6A3-206ENST00000409809 RSPH4AQ5TD94 716 aa15.43■□□□□ 0.06
COL6A3-206ENST00000409809 TERF2IPQ9NYB0 399 aa15.43■□□□□ 0.06
COL6A3-206ENST00000409809 IVLP07476 585 aa15.42■□□□□ 0.06
COL6A3-206ENST00000409809 SAFBQ15424 915 aaKnown RBP eCLIP15.42■□□□□ 0.06
COL6A3-206ENST00000409809 BRPF3Q9ULD4 1205 aa15.42■□□□□ 0.06
COL6A3-206ENST00000409809 CARMIL1Q5VZK9 1371 aa15.42■□□□□ 0.06
COL6A3-206ENST00000409809 PSMA5P28066 241 aa15.42■□□□□ 0.06
COL6A3-206ENST00000409809 CNTLNQ9NXG0 1405 aa15.42■□□□□ 0.06
COL6A3-206ENST00000409809 DACH1Q9UI36 760 aa15.42■□□□□ 0.06
COL6A3-206ENST00000409809 SETSIPP0DME0 302 aa15.41■□□□□ 0.06
COL6A3-206ENST00000409809 KIAA1328Q86T90 577 aa15.41■□□□□ 0.06
COL6A3-206ENST00000409809 JMYQ8N9B5 988 aa15.41■□□□□ 0.06
COL6A3-206ENST00000409809 PRIMPOLQ96LW4 560 aa15.41■□□□□ 0.06
COL6A3-206ENST00000409809 GTPBP4Q9BZE4 634 aaKnown RBP15.41■□□□□ 0.06
COL6A3-206ENST00000409809 CPLX1O14810 134 aa15.4■□□□□ 0.06
COL6A3-206ENST00000409809 ZNHIT6Q9NWK9 470 aaKnown RBP15.4■□□□□ 0.06
COL6A3-206ENST00000409809 CUX2O14529 1486 aa15.4■□□□□ 0.06
COL6A3-206ENST00000409809 CCDC18Q5T9S5 1454 aa15.4■□□□□ 0.06
COL6A3-206ENST00000409809 KIF3BO15066 747 aa15.4■□□□□ 0.06
COL6A3-206ENST00000409809 TMCO3Q6UWJ1 677 aa15.4■□□□□ 0.06
COL6A3-206ENST00000409809 NEMFO60524 1076 aa15.39■□□□□ 0.05
COL6A3-206ENST00000409809 TUBB4BP68371 445 aa15.39■□□□□ 0.05
COL6A3-206ENST00000409809 NF2P35240 595 aa15.39■□□□□ 0.05
COL6A3-206ENST00000409809 FOXD4L1Q9NU39 408 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms