RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 IFT172Q9UG01 1749 aa17.51■□□□□ 0.39
CHMP3-204ENST00000409727 STAC3Q96MF2 364 aa17.5■□□□□ 0.39
CHMP3-204ENST00000409727 FER1L4A9Z1Z3 1794 aa17.5■□□□□ 0.39
CHMP3-204ENST00000409727 MYOM2P54296 1465 aa17.49■□□□□ 0.39
CHMP3-204ENST00000409727 DDX10Q13206 875 aaKnown RBP17.49■□□□□ 0.39
CHMP3-204ENST00000409727 MYO5BQ9ULV0 1848 aa17.48■□□□□ 0.39
CHMP3-204ENST00000409727 PPLO60437 1756 aa17.48■□□□□ 0.39
CHMP3-204ENST00000409727 TMEM131LA2VDJ0 1609 aa17.48■□□□□ 0.39
CHMP3-204ENST00000409727 RPGRIP1LQ68CZ1 1315 aa17.47■□□□□ 0.39
CHMP3-204ENST00000409727 CFAP70Q5T0N1 1121 aa17.46■□□□□ 0.39
CHMP3-204ENST00000409727 TNRQ92752 1358 aa17.46■□□□□ 0.39
CHMP3-204ENST00000409727 C11orf95C9JLR9 678 aaPredicted RBP17.46■□□□□ 0.38
CHMP3-204ENST00000409727 NEXMIFQ5QGS0 1516 aa17.45■□□□□ 0.38
CHMP3-204ENST00000409727 ST20-MTHFSA0A0A6YYL1 179 aa17.45■□□□□ 0.38
CHMP3-204ENST00000409727 GPRASP1Q5JY77 1395 aa17.45■□□□□ 0.38
CHMP3-204ENST00000409727 WASHC2AQ641Q2 1341 aa17.44■□□□□ 0.38
CHMP3-204ENST00000409727 C3P01024 1663 aa17.44■□□□□ 0.38
CHMP3-204ENST00000409727 VGFO15240 615 aaPredicted RBP17.43■□□□□ 0.38
CHMP3-204ENST00000409727 NRXN1Q9ULB1 1477 aa17.43■□□□□ 0.38
CHMP3-204ENST00000409727 MSH5O43196 834 aa17.41■□□□□ 0.38
CHMP3-204ENST00000409727 POLR3GLQ9BT43 218 aa17.41■□□□□ 0.38
CHMP3-204ENST00000409727 PIK3C2GO75747 1445 aa17.41■□□□□ 0.38
CHMP3-204ENST00000409727 A2ML1A8K2U0 1454 aa17.41■□□□□ 0.38
CHMP3-204ENST00000409727 LAMC1P11047 1609 aa17.41■□□□□ 0.38
CHMP3-204ENST00000409727 RIMS1Q86UR5 1692 aaKnown RBP17.4■□□□□ 0.38
CHMP3-204ENST00000409727 MIER1Q8N108 512 aa17.4■□□□□ 0.38
CHMP3-204ENST00000409727 CCDC7Q96M83 1385 aa17.39■□□□□ 0.37
CHMP3-204ENST00000409727 KIAA1210Q9ULL0 1709 aa17.39■□□□□ 0.37
CHMP3-204ENST00000409727 KIF7Q2M1P5 1343 aa17.39■□□□□ 0.37
CHMP3-204ENST00000409727 TMEM132EQ6IEE7 984 aa17.37■□□□□ 0.37
CHMP3-204ENST00000409727 C14orf93Q9H972 538 aaKnown RBP17.37■□□□□ 0.37
CHMP3-204ENST00000409727 RIMS2Q9UQ26 1411 aa17.36■□□□□ 0.37
CHMP3-204ENST00000409727 SCAF11Q99590 1463 aaKnown RBP17.36■□□□□ 0.37
CHMP3-204ENST00000409727 IQGAP1P46940 1657 aa17.36■□□□□ 0.37
CHMP3-204ENST00000409727 ZFYVE9O95405 1425 aa17.35■□□□□ 0.37
CHMP3-204ENST00000409727 ADAMTSL3P82987 1691 aa17.35■□□□□ 0.37
CHMP3-204ENST00000409727 NLRP1Q9C000 1473 aa17.34■□□□□ 0.37
CHMP3-204ENST00000409727 UBR1Q8IWV7 1749 aa17.33■□□□□ 0.36
CHMP3-204ENST00000409727 POLR1AO95602 1720 aaPredicted RBP17.32■□□□□ 0.36
CHMP3-204ENST00000409727 TESK2Q96S53 571 aa17.32■□□□□ 0.36
CHMP3-204ENST00000409727 TRAK1Q9UPV9 953 aa17.32■□□□□ 0.36
CHMP3-204ENST00000409727 EIF3AQ14152 1382 aaKnown RBP17.31■□□□□ 0.36
CHMP3-204ENST00000409727 SETBP1Q9Y6X0 1596 aa17.31■□□□□ 0.36
CHMP3-204ENST00000409727 ADGRB1O14514 1584 aa17.3■□□□□ 0.36
CHMP3-204ENST00000409727 TMEM2Q9UHN6 1383 aa17.3■□□□□ 0.36
CHMP3-204ENST00000409727 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.29■□□□□ 0.36
CHMP3-204ENST00000409727 BCANQ96GW7 911 aa17.29■□□□□ 0.36
CHMP3-204ENST00000409727 MYO3AQ8NEV4 1616 aa17.29■□□□□ 0.36
CHMP3-204ENST00000409727 DISP3Q9P2K9 1392 aa17.29■□□□□ 0.36
CHMP3-204ENST00000409727 STK26Q9P289 416 aa17.29■□□□□ 0.36
CHMP3-204ENST00000409727 HDGFP51858 240 aaKnown RBP17.28■□□□□ 0.36
CHMP3-204ENST00000409727 KDM5AP29375 1690 aaKnown RBP17.28■□□□□ 0.36
CHMP3-204ENST00000409727 TMF1P82094 1093 aa17.27■□□□□ 0.36
CHMP3-204ENST00000409727 ALKQ9UM73 1620 aa17.27■□□□□ 0.35
CHMP3-204ENST00000409727 ASXL1Q8IXJ9 1541 aa17.25■□□□□ 0.35
CHMP3-204ENST00000409727 LTKP29376 864 aa17.24■□□□□ 0.35
CHMP3-204ENST00000409727 TXNDC2Q86VQ3 553 aa17.24■□□□□ 0.35
CHMP3-204ENST00000409727 ANP32CO43423 234 aa17.24■□□□□ 0.35
CHMP3-204ENST00000409727 THEMISQ8N1K5 641 aaPredicted RBP17.24■□□□□ 0.35
CHMP3-204ENST00000409727 CENPJQ9HC77 1338 aaPredicted RBP17.24■□□□□ 0.35
CHMP3-204ENST00000409727 EID1Q9Y6B2 187 aa17.23■□□□□ 0.35
CHMP3-204ENST00000409727 CEP170BQ9Y4F5 1589 aaPredicted RBP17.23■□□□□ 0.35
CHMP3-204ENST00000409727 PTPRMP28827 1452 aa17.23■□□□□ 0.35
CHMP3-204ENST00000409727 SAFB2Q14151 953 aaKnown RBP eCLIP17.22■□□□□ 0.35
CHMP3-204ENST00000409727 NRXN3Q9Y4C0 1643 aa17.21■□□□□ 0.35
CHMP3-204ENST00000409727 CNGB1Q14028 1251 aaPredicted RBP17.21■□□□□ 0.35
CHMP3-204ENST00000409727 YTHDC2Q9H6S0 1430 aaKnown RBP17.21■□□□□ 0.34
CHMP3-204ENST00000409727 ARHGEF28Q8N1W1 1705 aaKnown RBP17.19■□□□□ 0.34
CHMP3-204ENST00000409727 QRICH2Q9H0J4 1663 aa17.19■□□□□ 0.34
CHMP3-204ENST00000409727 SLIT1O75093 1534 aa17.19■□□□□ 0.34
CHMP3-204ENST00000409727 METP08581 1390 aa17.18■□□□□ 0.34
CHMP3-204ENST00000409727 SETD1AO15047 1707 aaKnown RBP17.18■□□□□ 0.34
CHMP3-204ENST00000409727 ARHGAP23Q9P227 1491 aa17.18■□□□□ 0.34
CHMP3-204ENST00000409727 PRAM1Q96QH2 718 aa17.17■□□□□ 0.34
CHMP3-204ENST00000409727 SLC26A8Q96RN1 970 aa17.17■□□□□ 0.34
CHMP3-204ENST00000409727 POGKQ9P215 609 aa17.17■□□□□ 0.34
CHMP3-204ENST00000409727 PLEKHG1Q9ULL1 1385 aa17.17■□□□□ 0.34
CHMP3-204ENST00000409727 CDCA8Q53HL2 280 aa17.16■□□□□ 0.34
CHMP3-204ENST00000409727 ADAMTS13Q76LX8 1427 aa17.15■□□□□ 0.34
CHMP3-204ENST00000409727 ZNF142P52746 1687 aaPredicted RBP17.14■□□□□ 0.33
CHMP3-204ENST00000409727 LRPPRCP42704 1394 aaKnown RBP17.14■□□□□ 0.33
CHMP3-204ENST00000409727 SBNO2Q9Y2G9 1366 aa17.14■□□□□ 0.33
CHMP3-204ENST00000409727 SLC24A1O60721 1099 aa17.14■□□□□ 0.33
CHMP3-204ENST00000409727 MINK1Q8N4C8 1332 aaPredicted RBP17.13■□□□□ 0.33
CHMP3-204ENST00000409727 SETD1BQ9UPS6 1966 aaKnown RBP17.13■□□□□ 0.33
CHMP3-204ENST00000409727 WAPLQ7Z5K2 1190 aa17.13■□□□□ 0.33
CHMP3-204ENST00000409727 YTHDC1Q96MU7 727 aaKnown RBP17.13■□□□□ 0.33
CHMP3-204ENST00000409727 PANK3Q9H999 370 aa17.12■□□□□ 0.33
CHMP3-204ENST00000409727 ANKLE2Q86XL3 938 aa17.11■□□□□ 0.33
CHMP3-204ENST00000409727 PLEKHH1Q9ULM0 1364 aa17.11■□□□□ 0.33
CHMP3-204ENST00000409727 EVC2Q86UK5 1308 aa17.1■□□□□ 0.33
CHMP3-204ENST00000409727 KDM4FA0A1W2PPD8 638 aa17.1■□□□□ 0.33
CHMP3-204ENST00000409727 ABCC11Q96J66 1382 aa17.09■□□□□ 0.33
CHMP3-204ENST00000409727 PRKRIP1Q9H875 184 aaPredicted RBP17.09■□□□□ 0.33
CHMP3-204ENST00000409727 TULP4Q9NRJ4 1543 aa17.08■□□□□ 0.33
CHMP3-204ENST00000409727 CABP2Q9NPB3 220 aa17.08■□□□□ 0.33
CHMP3-204ENST00000409727 MYOM1P52179 1685 aa17.08■□□□□ 0.32
CHMP3-204ENST00000409727 TMC1Q8TDI8 760 aa17.07■□□□□ 0.32
CHMP3-204ENST00000409727 DLC1Q96QB1 1528 aa17.07■□□□□ 0.32
CHMP3-204ENST00000409727 MED14O60244 1454 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms