RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 NEXMIFQ5QGS0 1516 aa19.77■□□□□ 0.76
GPNMB-203ENST00000409458 ZMYM3Q14202 1370 aa19.77■□□□□ 0.76
GPNMB-203ENST00000409458 WASHC2AQ641Q2 1341 aa19.76■□□□□ 0.75
GPNMB-203ENST00000409458 ESF1Q9H501 851 aaKnown RBP19.76■□□□□ 0.75
GPNMB-203ENST00000409458 FER1L4A9Z1Z3 1794 aa19.75■□□□□ 0.75
GPNMB-203ENST00000409458 ADGRF5Q8IZF2 1346 aa19.75■□□□□ 0.75
GPNMB-203ENST00000409458 DDX10Q13206 875 aaKnown RBP19.75■□□□□ 0.75
GPNMB-203ENST00000409458 IQGAP1P46940 1657 aa19.75■□□□□ 0.75
GPNMB-203ENST00000409458 C11orf95C9JLR9 678 aaPredicted RBP19.74■□□□□ 0.75
GPNMB-203ENST00000409458 RPGRIP1LQ68CZ1 1315 aa19.73■□□□□ 0.75
GPNMB-203ENST00000409458 MIER1Q8N108 512 aa19.73■□□□□ 0.75
GPNMB-203ENST00000409458 CCDC7Q96M83 1385 aa19.73■□□□□ 0.75
GPNMB-203ENST00000409458 PIK3C2GO75747 1445 aa19.72■□□□□ 0.75
GPNMB-203ENST00000409458 C3P01024 1663 aa19.7■□□□□ 0.74
GPNMB-203ENST00000409458 ST20-MTHFSA0A0A6YYL1 179 aa19.69■□□□□ 0.74
GPNMB-203ENST00000409458 KIF7Q2M1P5 1343 aa19.69■□□□□ 0.74
GPNMB-203ENST00000409458 CFAP70Q5T0N1 1121 aa19.67■□□□□ 0.74
GPNMB-203ENST00000409458 A2ML1A8K2U0 1454 aa19.67■□□□□ 0.74
GPNMB-203ENST00000409458 TNRQ92752 1358 aa19.66■□□□□ 0.74
GPNMB-203ENST00000409458 SETBP1Q9Y6X0 1596 aa19.66■□□□□ 0.74
GPNMB-203ENST00000409458 SCAF11Q99590 1463 aaKnown RBP19.66■□□□□ 0.74
GPNMB-203ENST00000409458 ZFYVE9O95405 1425 aa19.65■□□□□ 0.74
GPNMB-203ENST00000409458 NUTM2DQ5VT03 806 aaPredicted RBP19.65■□□□□ 0.74
GPNMB-203ENST00000409458 ADGRB1O14514 1584 aa19.63■□□□□ 0.73
GPNMB-203ENST00000409458 STAG3Q9UJ98 1225 aa19.62■□□□□ 0.73
GPNMB-203ENST00000409458 KDM5AP29375 1690 aaKnown RBP19.62■□□□□ 0.73
GPNMB-203ENST00000409458 VGFO15240 615 aaPredicted RBP19.62■□□□□ 0.73
GPNMB-203ENST00000409458 UBR1Q8IWV7 1749 aa19.61■□□□□ 0.73
GPNMB-203ENST00000409458 RIMS1Q86UR5 1692 aaKnown RBP19.61■□□□□ 0.73
GPNMB-203ENST00000409458 CEBPAP49715 358 aaPredicted RBP19.6■□□□□ 0.73
GPNMB-203ENST00000409458 C14orf93Q9H972 538 aaKnown RBP19.6■□□□□ 0.73
GPNMB-203ENST00000409458 TESK2Q96S53 571 aa19.59■□□□□ 0.73
GPNMB-203ENST00000409458 ADAMTSL3P82987 1691 aa19.59■□□□□ 0.73
GPNMB-203ENST00000409458 RIMS2Q9UQ26 1411 aa19.59■□□□□ 0.73
GPNMB-203ENST00000409458 MYO3AQ8NEV4 1616 aa19.58■□□□□ 0.72
GPNMB-203ENST00000409458 NLRP1Q9C000 1473 aa19.57■□□□□ 0.72
GPNMB-203ENST00000409458 EIF3AQ14152 1382 aaKnown RBP19.57■□□□□ 0.72
GPNMB-203ENST00000409458 ASXL1Q8IXJ9 1541 aa19.57■□□□□ 0.72
GPNMB-203ENST00000409458 DISP3Q9P2K9 1392 aa19.56■□□□□ 0.72
GPNMB-203ENST00000409458 POLR3GLQ9BT43 218 aa19.56■□□□□ 0.72
GPNMB-203ENST00000409458 PLPPR3Q6T4P5 718 aa19.53■□□□□ 0.72
GPNMB-203ENST00000409458 ALKQ9UM73 1620 aa19.52■□□□□ 0.72
GPNMB-203ENST00000409458 ARHGEF28Q8N1W1 1705 aaKnown RBP19.52■□□□□ 0.72
GPNMB-203ENST00000409458 SETD1AO15047 1707 aaKnown RBP19.52■□□□□ 0.71
GPNMB-203ENST00000409458 TMEM132EQ6IEE7 984 aa19.52■□□□□ 0.71
GPNMB-203ENST00000409458 NRXN3Q9Y4C0 1643 aa19.51■□□□□ 0.71
GPNMB-203ENST00000409458 SENP3Q9H4L4 574 aaPredicted RBP19.51■□□□□ 0.71
GPNMB-203ENST00000409458 QRICH2Q9H0J4 1663 aa19.5■□□□□ 0.71
GPNMB-203ENST00000409458 ANP32CO43423 234 aa19.5■□□□□ 0.71
GPNMB-203ENST00000409458 TMF1P82094 1093 aa19.5■□□□□ 0.71
GPNMB-203ENST00000409458 PTPRMP28827 1452 aa19.49■□□□□ 0.71
GPNMB-203ENST00000409458 TMEM2Q9UHN6 1383 aa19.49■□□□□ 0.71
GPNMB-203ENST00000409458 TRAK1Q9UPV9 953 aa19.47■□□□□ 0.71
GPNMB-203ENST00000409458 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.46■□□□□ 0.71
GPNMB-203ENST00000409458 SBNO2Q9Y2G9 1366 aa19.45■□□□□ 0.7
GPNMB-203ENST00000409458 CENPJQ9HC77 1338 aaPredicted RBP19.45■□□□□ 0.7
GPNMB-203ENST00000409458 SLIT1O75093 1534 aa19.44■□□□□ 0.7
GPNMB-203ENST00000409458 CEP170BQ9Y4F5 1589 aaPredicted RBP19.44■□□□□ 0.7
GPNMB-203ENST00000409458 MYOM1P52179 1685 aa19.43■□□□□ 0.7
GPNMB-203ENST00000409458 YTHDC2Q9H6S0 1430 aaKnown RBP19.43■□□□□ 0.7
GPNMB-203ENST00000409458 ARHGAP23Q9P227 1491 aa19.43■□□□□ 0.7
GPNMB-203ENST00000409458 ZNF142P52746 1687 aaPredicted RBP19.42■□□□□ 0.7
GPNMB-203ENST00000409458 HDGFP51858 240 aaKnown RBP19.4■□□□□ 0.7
GPNMB-203ENST00000409458 CDCA8Q53HL2 280 aa19.39■□□□□ 0.69
GPNMB-203ENST00000409458 STK26Q9P289 416 aa19.39■□□□□ 0.69
GPNMB-203ENST00000409458 CCER2I3L3R5 266 aa19.38■□□□□ 0.69
GPNMB-203ENST00000409458 LTKP29376 864 aa19.38■□□□□ 0.69
GPNMB-203ENST00000409458 PLEKHG1Q9ULL1 1385 aa19.38■□□□□ 0.69
GPNMB-203ENST00000409458 SLC24A1O60721 1099 aa19.37■□□□□ 0.69
GPNMB-203ENST00000409458 DLC1Q96QB1 1528 aa19.37■□□□□ 0.69
GPNMB-203ENST00000409458 TULP4Q9NRJ4 1543 aa19.37■□□□□ 0.69
GPNMB-203ENST00000409458 KNDC1Q76NI1 1749 aa19.37■□□□□ 0.69
GPNMB-203ENST00000409458 PRKRIP1Q9H875 184 aaPredicted RBP19.36■□□□□ 0.69
GPNMB-203ENST00000409458 ADAMTS13Q76LX8 1427 aa19.36■□□□□ 0.69
GPNMB-203ENST00000409458 METP08581 1390 aa19.36■□□□□ 0.69
GPNMB-203ENST00000409458 LRPPRCP42704 1394 aaKnown RBP19.36■□□□□ 0.69
GPNMB-203ENST00000409458 YTHDC1Q96MU7 727 aaKnown RBP19.36■□□□□ 0.69
GPNMB-203ENST00000409458 TXNDC2Q86VQ3 553 aa19.34■□□□□ 0.69
GPNMB-203ENST00000409458 THEMISQ8N1K5 641 aaPredicted RBP19.34■□□□□ 0.69
GPNMB-203ENST00000409458 EID1Q9Y6B2 187 aa19.33■□□□□ 0.68
GPNMB-203ENST00000409458 BCANQ96GW7 911 aa19.32■□□□□ 0.68
GPNMB-203ENST00000409458 PRAM1Q96QH2 718 aa19.32■□□□□ 0.68
GPNMB-203ENST00000409458 PANK3Q9H999 370 aa19.32■□□□□ 0.68
GPNMB-203ENST00000409458 MED14O60244 1454 aa19.32■□□□□ 0.68
GPNMB-203ENST00000409458 SETD1BQ9UPS6 1966 aaKnown RBP19.31■□□□□ 0.68
GPNMB-203ENST00000409458 SAFB2Q14151 953 aaKnown RBP eCLIP19.31■□□□□ 0.68
GPNMB-203ENST00000409458 ABCC11Q96J66 1382 aa19.3■□□□□ 0.68
GPNMB-203ENST00000409458 CPS1P31327 1500 aa19.3■□□□□ 0.68
GPNMB-203ENST00000409458 PER1O15534 1290 aaPredicted RBP19.3■□□□□ 0.68
GPNMB-203ENST00000409458 TECPR2O15040 1411 aa19.29■□□□□ 0.68
GPNMB-203ENST00000409458 DIP2AQ14689 1571 aa19.29■□□□□ 0.68
GPNMB-203ENST00000409458 CNGB1Q14028 1251 aaPredicted RBP19.28■□□□□ 0.68
GPNMB-203ENST00000409458 POGKQ9P215 609 aa19.28■□□□□ 0.68
GPNMB-203ENST00000409458 EVC2Q86UK5 1308 aa19.28■□□□□ 0.68
GPNMB-203ENST00000409458 PLEKHH1Q9ULM0 1364 aa19.28■□□□□ 0.68
GPNMB-203ENST00000409458 MINK1Q8N4C8 1332 aaPredicted RBP19.26■□□□□ 0.67
GPNMB-203ENST00000409458 WAPLQ7Z5K2 1190 aa19.24■□□□□ 0.67
GPNMB-203ENST00000409458 FAM135BQ49AJ0 1406 aa19.24■□□□□ 0.67
GPNMB-203ENST00000409458 PTPRUQ92729 1446 aa19.24■□□□□ 0.67
GPNMB-203ENST00000409458 CCDC184Q52MB2 194 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms