RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 EHBP1L1Q8N3D4 1523 aa12.9□□□□□ -0.34
PTCHD4-202ENST00000398738 GRIN2AQ12879 1464 aa12.9□□□□□ -0.34
PTCHD4-202ENST00000398738 NUP160Q12769 1436 aa12.9□□□□□ -0.34
PTCHD4-202ENST00000398738 MAP3K13O43283 966 aa12.9□□□□□ -0.34
PTCHD4-202ENST00000398738 TRPC6Q9Y210 931 aa12.9□□□□□ -0.34
PTCHD4-202ENST00000398738 EFCAB3Q8N7B9 438 aa12.9□□□□□ -0.34
PTCHD4-202ENST00000398738 CEP170Q5SW79 1584 aa12.89□□□□□ -0.35
PTCHD4-202ENST00000398738 CABP2Q9NPB3 220 aa12.89□□□□□ -0.35
PTCHD4-202ENST00000398738 PHF8Q9UPP1 1060 aa12.89□□□□□ -0.35
PTCHD4-202ENST00000398738 DAPK1P53355 1430 aa12.88□□□□□ -0.35
PTCHD4-202ENST00000398738 BRD4O60885 1362 aaPredicted RBP12.88□□□□□ -0.35
PTCHD4-202ENST00000398738 CHRM1P11229 460 aaPredicted RBP12.88□□□□□ -0.35
PTCHD4-202ENST00000398738 SLKQ9H2G2 1235 aaPredicted RBP12.88□□□□□ -0.35
PTCHD4-202ENST00000398738 ABCC5O15440 1437 aa12.88□□□□□ -0.35
PTCHD4-202ENST00000398738 MIA2Q96PC5 1412 aa12.88□□□□□ -0.35
PTCHD4-202ENST00000398738 NBPF1Q3BBV0 1214 aa12.87□□□□□ -0.35
PTCHD4-202ENST00000398738 KTN1Q86UP2 1357 aaKnown RBP12.87□□□□□ -0.35
PTCHD4-202ENST00000398738 SEMA3EO15041 775 aa12.86□□□□□ -0.35
PTCHD4-202ENST00000398738 NUP155O75694 1391 aa12.86□□□□□ -0.35
PTCHD4-202ENST00000398738 HECW1Q76N89 1606 aa12.86□□□□□ -0.35
PTCHD4-202ENST00000398738 PDE3BQ13370 1112 aa12.86□□□□□ -0.35
PTCHD4-202ENST00000398738 LRPPRCP42704 1394 aaKnown RBP12.86□□□□□ -0.35
PTCHD4-202ENST00000398738 ROCK2O75116 1388 aaKnown RBP12.85□□□□□ -0.35
PTCHD4-202ENST00000398738 PANK3Q9H999 370 aa12.85□□□□□ -0.35
PTCHD4-202ENST00000398738 ADAMTS8Q9UP79 889 aa12.85□□□□□ -0.35
PTCHD4-202ENST00000398738 BCORL1Q5H9F3 1711 aa12.85□□□□□ -0.35
PTCHD4-202ENST00000398738 PSEN1P49768 467 aa12.84□□□□□ -0.35
PTCHD4-202ENST00000398738 FAM161AQ3B820 660 aa12.84□□□□□ -0.35
PTCHD4-202ENST00000398738 EPRSP07814 1512 aaKnown RBP12.84□□□□□ -0.35
PTCHD4-202ENST00000398738 LRRIQ1Q96JM4 1722 aa12.84□□□□□ -0.35
PTCHD4-202ENST00000398738 RIMBP3CA6NJZ7 1639 aa12.84□□□□□ -0.35
PTCHD4-202ENST00000398738 RIMBP3BA6NNM3 1639 aa12.84□□□□□ -0.35
PTCHD4-202ENST00000398738 RIMBP3Q9UFD9 1639 aa12.84□□□□□ -0.35
PTCHD4-202ENST00000398738 TCOF1Q13428 1488 aaKnown RBP12.83□□□□□ -0.36
PTCHD4-202ENST00000398738 CCDC146Q8IYE0 955 aa12.83□□□□□ -0.36
PTCHD4-202ENST00000398738 POGKQ9P215 609 aa12.83□□□□□ -0.36
PTCHD4-202ENST00000398738 C8orf34Q49A92 452 aa12.82□□□□□ -0.36
PTCHD4-202ENST00000398738 WDR43Q15061 677 aaKnown RBP eCLIP12.81□□□□□ -0.36
PTCHD4-202ENST00000398738 LMOD2Q6P5Q4 547 aa12.81□□□□□ -0.36
PTCHD4-202ENST00000398738 CENPQQ7L2Z9 268 aaPredicted RBP12.81□□□□□ -0.36
PTCHD4-202ENST00000398738 ARID4BQ4LE39 1312 aaPredicted RBP12.81□□□□□ -0.36
PTCHD4-202ENST00000398738 KIAA1107Q9UPP5 1409 aa12.81□□□□□ -0.36
PTCHD4-202ENST00000398738 GZF1Q9H116 711 aaPredicted RBP12.8□□□□□ -0.36
PTCHD4-202ENST00000398738 UBE2Q2Q8WVN8 375 aa12.8□□□□□ -0.36
PTCHD4-202ENST00000398738 PHF12Q96QT6 1004 aa12.8□□□□□ -0.36
PTCHD4-202ENST00000398738 CTTNBP2Q8WZ74 1663 aa12.8□□□□□ -0.36
PTCHD4-202ENST00000398738 PZPP20742 1482 aa12.79□□□□□ -0.36
PTCHD4-202ENST00000398738 PDAP1Q13442 181 aaKnown RBP12.79□□□□□ -0.36
PTCHD4-202ENST00000398738 GCC2Q8IWJ2 1684 aa12.78□□□□□ -0.36
PTCHD4-202ENST00000398738 ROCK1Q13464 1354 aa12.78□□□□□ -0.36
PTCHD4-202ENST00000398738 ARHGEF11O15085 1522 aa12.78□□□□□ -0.36
PTCHD4-202ENST00000398738 BCAR3O75815 825 aa12.78□□□□□ -0.36
PTCHD4-202ENST00000398738 CANXP27824 592 aaKnown RBP12.77□□□□□ -0.36
PTCHD4-202ENST00000398738 PER1O15534 1290 aaPredicted RBP12.77□□□□□ -0.37
PTCHD4-202ENST00000398738 TSPY4P0CV99 314 aa12.77□□□□□ -0.37
PTCHD4-202ENST00000398738 TSPY10P0CW01 314 aa12.77□□□□□ -0.37
PTCHD4-202ENST00000398738 PRG4Q92954 1404 aaPredicted RBP12.77□□□□□ -0.37
PTCHD4-202ENST00000398738 SEC24BO95487 1268 aa12.77□□□□□ -0.37
PTCHD4-202ENST00000398738 HNRNPMP52272 730 aaKnown RBP eCLIP12.77□□□□□ -0.372e-9■■■□□ 17.3
PTCHD4-202ENST00000398738 NCKAP5LQ9HCH0 1330 aa12.76□□□□□ -0.37
PTCHD4-202ENST00000398738 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.76□□□□□ -0.37
PTCHD4-202ENST00000398738 FBXO22Q8NEZ5 403 aa12.76□□□□□ -0.37
PTCHD4-202ENST00000398738 KDM2BQ8NHM5 1336 aa12.76□□□□□ -0.37
PTCHD4-202ENST00000398738 MS4A4AQ96JQ5 239 aa12.75□□□□□ -0.37
PTCHD4-202ENST00000398738 GOLGA2Q08379 1002 aa12.75□□□□□ -0.37
PTCHD4-202ENST00000398738 NEUROD2Q15784 382 aa12.75□□□□□ -0.37
PTCHD4-202ENST00000398738 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.75□□□□□ -0.37
PTCHD4-202ENST00000398738 SAMD9Q5K651 1589 aa12.75□□□□□ -0.37
PTCHD4-202ENST00000398738 SGIP1Q9BQI5 828 aa12.75□□□□□ -0.37
PTCHD4-202ENST00000398738 CHMP7Q8WUX9 453 aaPredicted RBP12.74□□□□□ -0.37
PTCHD4-202ENST00000398738 ANKRD50Q9ULJ7 1429 aa12.74□□□□□ -0.37
PTCHD4-202ENST00000398738 KIAA0586Q9BVV6 1533 aa12.74□□□□□ -0.37
PTCHD4-202ENST00000398738 DUSP27Q5VZP5 1158 aa12.74□□□□□ -0.37
PTCHD4-202ENST00000398738 ANKRD30AQ9BXX3 1397 aa12.74□□□□□ -0.37
PTCHD4-202ENST00000398738 IGHDP01880 384 aa12.73□□□□□ -0.37
PTCHD4-202ENST00000398738 ZNF467Q7Z7K2 595 aaPredicted RBP12.73□□□□□ -0.37
PTCHD4-202ENST00000398738 KNSTRNQ9Y448 316 aa12.73□□□□□ -0.37
PTCHD4-202ENST00000398738 PARD3Q8TEW0 1356 aa12.73□□□□□ -0.37
PTCHD4-202ENST00000398738 NAP1L5Q96NT1 182 aaPredicted RBP12.73□□□□□ -0.37
PTCHD4-202ENST00000398738 APAF1O14727 1248 aa12.72□□□□□ -0.37
PTCHD4-202ENST00000398738 RSPH6AQ9H0K4 717 aa12.72□□□□□ -0.37
PTCHD4-202ENST00000398738 RRAGDQ9NQL2 400 aaPredicted RBP12.72□□□□□ -0.37
PTCHD4-202ENST00000398738 COG6Q9Y2V7 657 aa12.72□□□□□ -0.37
PTCHD4-202ENST00000398738 PLEKHH1Q9ULM0 1364 aa12.72□□□□□ -0.37
PTCHD4-202ENST00000398738 FAM43AQ8N2R8 423 aa12.71□□□□□ -0.37
PTCHD4-202ENST00000398738 DISP3Q9P2K9 1392 aa12.71□□□□□ -0.37
PTCHD4-202ENST00000398738 PANK1Q8TE04 598 aa12.71□□□□□ -0.37
PTCHD4-202ENST00000398738 KDM5CP41229 1560 aa12.71□□□□□ -0.37
PTCHD4-202ENST00000398738 WDR70Q9NW82 654 aa12.71□□□□□ -0.38
PTCHD4-202ENST00000398738 TMF1P82094 1093 aa12.7□□□□□ -0.38
PTCHD4-202ENST00000398738 KIF12Q96FN5 646 aa12.7□□□□□ -0.38
PTCHD4-202ENST00000398738 ERCC6L2Q5T890 1561 aa12.7□□□□□ -0.38
PTCHD4-202ENST00000398738 MBD5Q9P267 1494 aa12.7□□□□□ -0.38
PTCHD4-202ENST00000398738 IQGAP2Q13576 1575 aa12.69□□□□□ -0.38
PTCHD4-202ENST00000398738 BCL2L13Q9BXK5 485 aa12.69□□□□□ -0.38
PTCHD4-202ENST00000398738 RALGAPBQ86X10 1494 aa12.69□□□□□ -0.38
PTCHD4-202ENST00000398738 PPP2R1AP30153 589 aa12.68□□□□□ -0.38
PTCHD4-202ENST00000398738 BECN1Q14457 450 aa12.68□□□□□ -0.38
PTCHD4-202ENST00000398738 PIP4P2Q8N4L2 257 aa12.68□□□□□ -0.38
PTCHD4-202ENST00000398738 CLUAP1Q96AJ1 413 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms