RNA–Protein interactions for RNA: ENST00000397443.6

CPNE1-204, Transcript of copine 1, humanhuman

APPRIS P1 TSL 5

Gene CPNE1, Length 1,928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-204ENST00000397443 MYOM2P54296 1465 aa30.05■■■□□ 2.4
CPNE1-204ENST00000397443 STAC3Q96MF2 364 aa30.05■■■□□ 2.4
CPNE1-204ENST00000397443 RALGAPBQ86X10 1494 aa30.04■■■□□ 2.4
CPNE1-204ENST00000397443 MYO3AQ8NEV4 1616 aa30.04■■■□□ 2.4
CPNE1-204ENST00000397443 ROCK2O75116 1388 aaKnown RBP30.03■■■□□ 2.4
CPNE1-204ENST00000397443 NBPF1Q3BBV0 1214 aa30.03■■■□□ 2.4
CPNE1-204ENST00000397443 UBR1Q8IWV7 1749 aa30.03■■■□□ 2.4
CPNE1-204ENST00000397443 TRPM1Q7Z4N2 1603 aa30.03■■■□□ 2.4
CPNE1-204ENST00000397443 VGFO15240 615 aaPredicted RBP30.02■■■□□ 2.4
CPNE1-204ENST00000397443 KDM4FA0A1W2PPD8 638 aa30.01■■■□□ 2.39
CPNE1-204ENST00000397443 CARD11Q9BXL7 1154 aa30.01■■■□□ 2.39
CPNE1-204ENST00000397443 RIMS2Q9UQ26 1411 aa30■■■□□ 2.39
CPNE1-204ENST00000397443 ZNF316A6NFI3 1004 aaPredicted RBP30■■■□□ 2.39
CPNE1-204ENST00000397443 CFAP70Q5T0N1 1121 aa29.98■■■□□ 2.39
CPNE1-204ENST00000397443 NRXN1Q9ULB1 1477 aa29.97■■■□□ 2.39
CPNE1-204ENST00000397443 SETD1BQ9UPS6 1966 aaKnown RBP29.95■■■□□ 2.38
CPNE1-204ENST00000397443 KDM5AP29375 1690 aaKnown RBP29.95■■■□□ 2.38
CPNE1-204ENST00000397443 CEP170BQ9Y4F5 1589 aaPredicted RBP29.95■■■□□ 2.38
CPNE1-204ENST00000397443 HSPA5P11021 654 aaKnown RBP29.94■■■□□ 2.38
CPNE1-204ENST00000397443 EIF4G2P78344 907 aaKnown RBP eCLIP29.94■■■□□ 2.38
CPNE1-204ENST00000397443 PIK3C2GO75747 1445 aa29.94■■■□□ 2.38
CPNE1-204ENST00000397443 TMEM2Q9UHN6 1383 aa29.93■■■□□ 2.38
CPNE1-204ENST00000397443 ZFYVE9O95405 1425 aa29.92■■■□□ 2.38
CPNE1-204ENST00000397443 THEMISQ8N1K5 641 aaPredicted RBP29.91■■■□□ 2.38
CPNE1-204ENST00000397443 USP47Q96K76 1375 aa29.9■■■□□ 2.38
CPNE1-204ENST00000397443 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.89■■■□□ 2.38
CPNE1-204ENST00000397443 HDGFP51858 240 aaKnown RBP29.88■■■□□ 2.37
CPNE1-204ENST00000397443 BCANQ96GW7 911 aa29.87■■■□□ 2.37
CPNE1-204ENST00000397443 GPRASP1Q5JY77 1395 aa29.87■■■□□ 2.37
CPNE1-204ENST00000397443 C14orf93Q9H972 538 aaKnown RBP29.86■■■□□ 2.37
CPNE1-204ENST00000397443 LTKP29376 864 aa29.86■■■□□ 2.37
CPNE1-204ENST00000397443 TXNDC2Q86VQ3 553 aa29.86■■■□□ 2.37
CPNE1-204ENST00000397443 KIAA1210Q9ULL0 1709 aa29.85■■■□□ 2.37
CPNE1-204ENST00000397443 TMEM132EQ6IEE7 984 aa29.85■■■□□ 2.37
CPNE1-204ENST00000397443 ZNF142P52746 1687 aaPredicted RBP29.84■■■□□ 2.37
CPNE1-204ENST00000397443 EID1Q9Y6B2 187 aa29.84■■■□□ 2.37
CPNE1-204ENST00000397443 SLIT1O75093 1534 aa29.8■■■□□ 2.36
CPNE1-204ENST00000397443 ARHGAP23Q9P227 1491 aa29.79■■■□□ 2.36
CPNE1-204ENST00000397443 ST20-MTHFSA0A0A6YYL1 179 aa29.79■■■□□ 2.36
CPNE1-204ENST00000397443 LAMC1P11047 1609 aa29.78■■■□□ 2.36
CPNE1-204ENST00000397443 ALKQ9UM73 1620 aa29.76■■■□□ 2.35
CPNE1-204ENST00000397443 ADGRB1O14514 1584 aa29.74■■■□□ 2.35
CPNE1-204ENST00000397443 IQGAP1P46940 1657 aa29.74■■■□□ 2.35
CPNE1-204ENST00000397443 SCAF11Q99590 1463 aaKnown RBP29.74■■■□□ 2.35
CPNE1-204ENST00000397443 SETBP1Q9Y6X0 1596 aa29.74■■■□□ 2.35
CPNE1-204ENST00000397443 TRAK1Q9UPV9 953 aa29.73■■■□□ 2.35
CPNE1-204ENST00000397443 NRXN3Q9Y4C0 1643 aa29.73■■■□□ 2.35
CPNE1-204ENST00000397443 STK26Q9P289 416 aa29.73■■■□□ 2.35
CPNE1-204ENST00000397443 PLEKHG1Q9ULL1 1385 aa29.72■■■□□ 2.35
CPNE1-204ENST00000397443 ASXL1Q8IXJ9 1541 aa29.71■■■□□ 2.35
CPNE1-204ENST00000397443 ANKLE2Q86XL3 938 aa29.71■■■□□ 2.35
CPNE1-204ENST00000397443 SLC26A8Q96RN1 970 aa29.7■■■□□ 2.34
CPNE1-204ENST00000397443 C11orf95C9JLR9 678 aaPredicted RBP29.67■■■□□ 2.34
CPNE1-204ENST00000397443 HSPA2P54652 639 aa29.65■■■□□ 2.34
CPNE1-204ENST00000397443 SETD1AO15047 1707 aaKnown RBP29.65■■■□□ 2.34
CPNE1-204ENST00000397443 EIF3AQ14152 1382 aaKnown RBP29.65■■■□□ 2.34
CPNE1-204ENST00000397443 ADAMTS13Q76LX8 1427 aa29.65■■■□□ 2.34
CPNE1-204ENST00000397443 METP08581 1390 aa29.65■■■□□ 2.34
CPNE1-204ENST00000397443 POLR3GLQ9BT43 218 aa29.63■■■□□ 2.33
CPNE1-204ENST00000397443 YTHDC2Q9H6S0 1430 aaKnown RBP29.63■■■□□ 2.33
CPNE1-204ENST00000397443 NCKAP5LQ9HCH0 1330 aa29.62■■■□□ 2.33
CPNE1-204ENST00000397443 WASHC2AQ641Q2 1341 aa29.6■■■□□ 2.33
CPNE1-204ENST00000397443 TESK2Q96S53 571 aa29.59■■■□□ 2.33
CPNE1-204ENST00000397443 SAFB2Q14151 953 aaKnown RBP eCLIP29.59■■■□□ 2.333e-13■□□□□ 9.1
CPNE1-204ENST00000397443 CENPJQ9HC77 1338 aaPredicted RBP29.57■■■□□ 2.32
CPNE1-204ENST00000397443 LMTK3Q96Q04 1460 aa29.57■■■□□ 2.32
CPNE1-204ENST00000397443 DDX10Q13206 875 aaKnown RBP29.56■■■□□ 2.32
CPNE1-204ENST00000397443 ARHGEF28Q8N1W1 1705 aaKnown RBP29.55■■■□□ 2.32
CPNE1-204ENST00000397443 KIF7Q2M1P5 1343 aa29.55■■■□□ 2.32
CPNE1-204ENST00000397443 DIEXFQ68CQ4 756 aaKnown RBP29.55■■■□□ 2.32
CPNE1-204ENST00000397443 POLR1AO95602 1720 aaPredicted RBP29.55■■■□□ 2.32
CPNE1-204ENST00000397443 MED14O60244 1454 aa29.54■■■□□ 2.32
CPNE1-204ENST00000397443 LRPPRCP42704 1394 aaKnown RBP29.54■■■□□ 2.32
CPNE1-204ENST00000397443 CCDC7Q96M83 1385 aa29.54■■■□□ 2.32
CPNE1-204ENST00000397443 TBX22Q9Y458 520 aa29.53■■■□□ 2.32
CPNE1-204ENST00000397443 PRAM1Q96QH2 718 aa29.53■■■□□ 2.32
CPNE1-204ENST00000397443 NPHP4O75161 1426 aaPredicted RBP29.52■■■□□ 2.32
CPNE1-204ENST00000397443 DISP3Q9P2K9 1392 aa29.52■■■□□ 2.32
CPNE1-204ENST00000397443 POGKQ9P215 609 aa29.52■■■□□ 2.32
CPNE1-204ENST00000397443 TMF1P82094 1093 aa29.5■■■□□ 2.31
CPNE1-204ENST00000397443 WAPLQ7Z5K2 1190 aa29.49■■■□□ 2.31
CPNE1-204ENST00000397443 QRICH2Q9H0J4 1663 aa29.49■■■□□ 2.31
CPNE1-204ENST00000397443 DIP2AQ14689 1571 aa29.48■■■□□ 2.31
CPNE1-204ENST00000397443 ABCC11Q96J66 1382 aa29.48■■■□□ 2.31
CPNE1-204ENST00000397443 PTPRUQ92729 1446 aa29.48■■■□□ 2.31
CPNE1-204ENST00000397443 AMOTL2Q9Y2J4 779 aa29.46■■■□□ 2.31
CPNE1-204ENST00000397443 PLEKHH1Q9ULM0 1364 aa29.45■■■□□ 2.3
CPNE1-204ENST00000397443 MINK1Q8N4C8 1332 aaPredicted RBP29.44■■■□□ 2.3
CPNE1-204ENST00000397443 DLC1Q96QB1 1528 aa29.42■■■□□ 2.3
CPNE1-204ENST00000397443 ROBO2Q9HCK4 1378 aa29.41■■■□□ 2.3
CPNE1-204ENST00000397443 KNDC1Q76NI1 1749 aa29.4■■■□□ 2.3
CPNE1-204ENST00000397443 TECPR2O15040 1411 aa29.39■■■□□ 2.3
CPNE1-204ENST00000397443 SBNO2Q9Y2G9 1366 aa29.39■■■□□ 2.3
CPNE1-204ENST00000397443 CPS1P31327 1500 aa29.38■■■□□ 2.29
CPNE1-204ENST00000397443 KCNA6P17658 529 aa29.37■■■□□ 2.29
CPNE1-204ENST00000397443 SLC24A1O60721 1099 aa29.35■■■□□ 2.29
CPNE1-204ENST00000397443 PIK3R4Q99570 1358 aa29.35■■■□□ 2.29
CPNE1-204ENST00000397443 CDCA8Q53HL2 280 aa29.34■■■□□ 2.29
CPNE1-204ENST00000397443 FAM135BQ49AJ0 1406 aa29.34■■■□□ 2.29
CPNE1-204ENST00000397443 STRCQ7RTU9 1775 aa29.34■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms