RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 MYOM2P54296 1465 aa12.03□□□□□ -0.48
TDP1-203ENST00000393454 ERVK-7P63135 1459 aa12.03□□□□□ -0.48
TDP1-203ENST00000393454 RPGRIP1LQ68CZ1 1315 aa12.03□□□□□ -0.48
TDP1-203ENST00000393454 STAG3Q9UJ98 1225 aa12.02□□□□□ -0.48
TDP1-203ENST00000393454 LAMC1P11047 1609 aa12.02□□□□□ -0.48
TDP1-203ENST00000393454 POLR1AO95602 1720 aaPredicted RBP12.02□□□□□ -0.48
TDP1-203ENST00000393454 ZMYM3Q14202 1370 aa12.02□□□□□ -0.49
TDP1-203ENST00000393454 PPLO60437 1756 aa12.01□□□□□ -0.49
TDP1-203ENST00000393454 ANP32CO43423 234 aa12.01□□□□□ -0.49
TDP1-203ENST00000393454 CFAP70Q5T0N1 1121 aa12.01□□□□□ -0.49
TDP1-203ENST00000393454 NUTM2DQ5VT03 806 aaPredicted RBP12.01□□□□□ -0.49
TDP1-203ENST00000393454 KIAA1210Q9ULL0 1709 aa11.99□□□□□ -0.49
TDP1-203ENST00000393454 MYO5BQ9ULV0 1848 aa11.99□□□□□ -0.49
TDP1-203ENST00000393454 VGFO15240 615 aaPredicted RBP11.99□□□□□ -0.49
TDP1-203ENST00000393454 SPATA31D1Q6ZQQ2 1576 aa11.98□□□□□ -0.49
TDP1-203ENST00000393454 YTHDC1Q96MU7 727 aaKnown RBP11.98□□□□□ -0.49
TDP1-203ENST00000393454 TMEM131LA2VDJ0 1609 aa11.98□□□□□ -0.49
TDP1-203ENST00000393454 NRXN1Q9ULB1 1477 aa11.98□□□□□ -0.49
TDP1-203ENST00000393454 NEXMIFQ5QGS0 1516 aa11.97□□□□□ -0.49
TDP1-203ENST00000393454 PLPPR3Q6T4P5 718 aa11.97□□□□□ -0.49
TDP1-203ENST00000393454 SENP3Q9H4L4 574 aaPredicted RBP11.97□□□□□ -0.49
TDP1-203ENST00000393454 SCAF11Q99590 1463 aaKnown RBP11.97□□□□□ -0.49
TDP1-203ENST00000393454 IQGAP1P46940 1657 aa11.96□□□□□ -0.49
TDP1-203ENST00000393454 PIK3C2GO75747 1445 aa11.95□□□□□ -0.5
TDP1-203ENST00000393454 C14orf93Q9H972 538 aaKnown RBP11.95□□□□□ -0.5
TDP1-203ENST00000393454 EIF3AQ14152 1382 aaKnown RBP11.95□□□□□ -0.5
TDP1-203ENST00000393454 TMF1P82094 1093 aa11.95□□□□□ -0.5
TDP1-203ENST00000393454 TNRQ92752 1358 aa11.94□□□□□ -0.5
TDP1-203ENST00000393454 CEBPAP49715 358 aaPredicted RBP11.94□□□□□ -0.5
TDP1-203ENST00000393454 TESK2Q96S53 571 aa11.94□□□□□ -0.5
TDP1-203ENST00000393454 FER1L4A9Z1Z3 1794 aa11.93□□□□□ -0.5
TDP1-203ENST00000393454 TMEM132EQ6IEE7 984 aa11.93□□□□□ -0.5
TDP1-203ENST00000393454 DISP3Q9P2K9 1392 aa11.92□□□□□ -0.5
TDP1-203ENST00000393454 ZFYVE9O95405 1425 aa11.92□□□□□ -0.5
TDP1-203ENST00000393454 A2ML1A8K2U0 1454 aa11.92□□□□□ -0.5
TDP1-203ENST00000393454 SETBP1Q9Y6X0 1596 aa11.91□□□□□ -0.5
TDP1-203ENST00000393454 PHF23Q9BUL5 403 aaPredicted RBP11.91□□□□□ -0.5
TDP1-203ENST00000393454 TRAK1Q9UPV9 953 aa11.91□□□□□ -0.5
TDP1-203ENST00000393454 RIMS2Q9UQ26 1411 aa11.9□□□□□ -0.5
TDP1-203ENST00000393454 CNGB1Q14028 1251 aaPredicted RBP11.9□□□□□ -0.5
TDP1-203ENST00000393454 CCER2I3L3R5 266 aa11.9□□□□□ -0.51
TDP1-203ENST00000393454 C3P01024 1663 aa11.89□□□□□ -0.51
TDP1-203ENST00000393454 CENPBP07199 599 aaPredicted RBP11.88□□□□□ -0.51
TDP1-203ENST00000393454 CDCA8Q53HL2 280 aa11.88□□□□□ -0.51
TDP1-203ENST00000393454 ADGRB1O14514 1584 aa11.88□□□□□ -0.51
TDP1-203ENST00000393454 HDGFP51858 240 aaKnown RBP11.88□□□□□ -0.51
TDP1-203ENST00000393454 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.88□□□□□ -0.51
TDP1-203ENST00000393454 STK26Q9P289 416 aa11.88□□□□□ -0.51
TDP1-203ENST00000393454 CENPJQ9HC77 1338 aaPredicted RBP11.87□□□□□ -0.51
TDP1-203ENST00000393454 SLC24A1O60721 1099 aa11.87□□□□□ -0.51
TDP1-203ENST00000393454 BCANQ96GW7 911 aa11.87□□□□□ -0.51
TDP1-203ENST00000393454 PRKRIP1Q9H875 184 aaPredicted RBP11.87□□□□□ -0.51
TDP1-203ENST00000393454 UBR1Q8IWV7 1749 aa11.85□□□□□ -0.51
TDP1-203ENST00000393454 NLRP1Q9C000 1473 aa11.85□□□□□ -0.51
TDP1-203ENST00000393454 RIMS1Q86UR5 1692 aaKnown RBP11.85□□□□□ -0.51
TDP1-203ENST00000393454 MYO3AQ8NEV4 1616 aa11.85□□□□□ -0.51
TDP1-203ENST00000393454 ALKQ9UM73 1620 aa11.85□□□□□ -0.51
TDP1-203ENST00000393454 PANK3Q9H999 370 aa11.84□□□□□ -0.51
TDP1-203ENST00000393454 KDM5AP29375 1690 aaKnown RBP11.84□□□□□ -0.51
TDP1-203ENST00000393454 TMEM2Q9UHN6 1383 aa11.83□□□□□ -0.51
TDP1-203ENST00000393454 QRICH2Q9H0J4 1663 aa11.83□□□□□ -0.52
TDP1-203ENST00000393454 SAFB2Q14151 953 aaKnown RBP eCLIP11.83□□□□□ -0.52
TDP1-203ENST00000393454 ASXL1Q8IXJ9 1541 aa11.82□□□□□ -0.52
TDP1-203ENST00000393454 YTHDC2Q9H6S0 1430 aaKnown RBP11.82□□□□□ -0.52
TDP1-203ENST00000393454 ARHGEF28Q8N1W1 1705 aaKnown RBP11.82□□□□□ -0.52
TDP1-203ENST00000393454 POGKQ9P215 609 aa11.82□□□□□ -0.52
TDP1-203ENST00000393454 SBNO2Q9Y2G9 1366 aa11.81□□□□□ -0.52
TDP1-203ENST00000393454 TXNDC2Q86VQ3 553 aa11.8□□□□□ -0.52
TDP1-203ENST00000393454 EID1Q9Y6B2 187 aa11.8□□□□□ -0.52
TDP1-203ENST00000393454 THEMISQ8N1K5 641 aaPredicted RBP11.8□□□□□ -0.52
TDP1-203ENST00000393454 PRAM1Q96QH2 718 aa11.8□□□□□ -0.52
TDP1-203ENST00000393454 ADAMTSL3P82987 1691 aa11.8□□□□□ -0.52
TDP1-203ENST00000393454 LTKP29376 864 aa11.79□□□□□ -0.52
TDP1-203ENST00000393454 MRS2Q9HD23 443 aa11.79□□□□□ -0.52
TDP1-203ENST00000393454 PTPRMP28827 1452 aa11.79□□□□□ -0.52
TDP1-203ENST00000393454 PER1O15534 1290 aaPredicted RBP11.79□□□□□ -0.52
TDP1-203ENST00000393454 CCDC184Q52MB2 194 aa11.79□□□□□ -0.52
TDP1-203ENST00000393454 EVC2Q86UK5 1308 aa11.78□□□□□ -0.52
TDP1-203ENST00000393454 TMC1Q8TDI8 760 aa11.78□□□□□ -0.52
TDP1-203ENST00000393454 KNSTRNQ9Y448 316 aa11.78□□□□□ -0.52
TDP1-203ENST00000393454 NRXN3Q9Y4C0 1643 aa11.78□□□□□ -0.52
TDP1-203ENST00000393454 KTN1Q86UP2 1357 aaKnown RBP11.78□□□□□ -0.52
TDP1-203ENST00000393454 RALBP1Q15311 655 aa11.77□□□□□ -0.52
TDP1-203ENST00000393454 CC2D1BQ5T0F9 858 aaKnown RBP11.77□□□□□ -0.52
TDP1-203ENST00000393454 MINK1Q8N4C8 1332 aaPredicted RBP11.77□□□□□ -0.52
TDP1-203ENST00000393454 SETD1AO15047 1707 aaKnown RBP11.77□□□□□ -0.52
TDP1-203ENST00000393454 MYOM1P52179 1685 aa11.77□□□□□ -0.53
TDP1-203ENST00000393454 LRPPRCP42704 1394 aaKnown RBP11.77□□□□□ -0.53
TDP1-203ENST00000393454 METP08581 1390 aa11.76□□□□□ -0.53
TDP1-203ENST00000393454 PLEKHG1Q9ULL1 1385 aa11.75□□□□□ -0.53
TDP1-203ENST00000393454 CEP170BQ9Y4F5 1589 aaPredicted RBP11.75□□□□□ -0.53
TDP1-203ENST00000393454 SLIT1O75093 1534 aa11.75□□□□□ -0.53
TDP1-203ENST00000393454 SRPK2P78362 688 aaKnown RBP11.75□□□□□ -0.53
TDP1-203ENST00000393454 WAPLQ7Z5K2 1190 aa11.75□□□□□ -0.53
TDP1-203ENST00000393454 FAM9BQ8IZU0 186 aa11.75□□□□□ -0.53
TDP1-203ENST00000393454 CABP2Q9NPB3 220 aa11.75□□□□□ -0.53
TDP1-203ENST00000393454 SLC26A8Q96RN1 970 aa11.74□□□□□ -0.53
TDP1-203ENST00000393454 TULP4Q9NRJ4 1543 aa11.74□□□□□ -0.53
TDP1-203ENST00000393454 ARHGAP23Q9P227 1491 aa11.74□□□□□ -0.53
TDP1-203ENST00000393454 ABCC11Q96J66 1382 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms