RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 CHD1O14646 1710 aa13.14□□□□□ -0.31
COL17A1-203ENST00000393211 PTPRTO14522 1441 aa13.13□□□□□ -0.31
COL17A1-203ENST00000393211 SENP3-EIF4A1A0A087X0R7 540 aa13.13□□□□□ -0.31
COL17A1-203ENST00000393211 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.13□□□□□ -0.31
COL17A1-203ENST00000393211 KNSTRNQ9Y448 316 aa13.13□□□□□ -0.31
COL17A1-203ENST00000393211 ASXL1Q8IXJ9 1541 aa13.13□□□□□ -0.31
COL17A1-203ENST00000393211 UHRF1BP1LA0JNW5 1464 aa13.13□□□□□ -0.31
COL17A1-203ENST00000393211 EFCAB2Q5VUJ9 269 aa13.13□□□□□ -0.31
COL17A1-203ENST00000393211 NGEFQ8N5V2 710 aa13.13□□□□□ -0.31
COL17A1-203ENST00000393211 CRBNQ96SW2 442 aa13.13□□□□□ -0.31
COL17A1-203ENST00000393211 SALL2Q9Y467 1007 aaPredicted RBP13.13□□□□□ -0.31
COL17A1-203ENST00000393211 ZNF521Q96K83 1311 aa13.12□□□□□ -0.31
COL17A1-203ENST00000393211 PPP2R1AP30153 589 aa13.12□□□□□ -0.31
COL17A1-203ENST00000393211 CENPQQ7L2Z9 268 aaPredicted RBP13.12□□□□□ -0.31
COL17A1-203ENST00000393211 EIF3AQ14152 1382 aaKnown RBP13.12□□□□□ -0.31
COL17A1-203ENST00000393211 DEPDC5O75140 1603 aa13.11□□□□□ -0.31
COL17A1-203ENST00000393211 WDR43Q15061 677 aaKnown RBP eCLIP13.11□□□□□ -0.31
COL17A1-203ENST00000393211 ADAMTS8Q9UP79 889 aa13.11□□□□□ -0.31
COL17A1-203ENST00000393211 KDM2BQ8NHM5 1336 aa13.11□□□□□ -0.31
COL17A1-203ENST00000393211 AMER1Q5JTC6 1135 aaPredicted RBP13.1□□□□□ -0.31
COL17A1-203ENST00000393211 TET3O43151 1660 aa13.1□□□□□ -0.31
COL17A1-203ENST00000393211 GOLGA2Q08379 1002 aa13.1□□□□□ -0.31
COL17A1-203ENST00000393211 DUSP27Q5VZP5 1158 aa13.1□□□□□ -0.31
COL17A1-203ENST00000393211 MYOM1P52179 1685 aa13.09□□□□□ -0.31
COL17A1-203ENST00000393211 KDM5AP29375 1690 aaKnown RBP13.08□□□□□ -0.32
COL17A1-203ENST00000393211 PLIN1O60240 522 aa13.08□□□□□ -0.32
COL17A1-203ENST00000393211 NPM2Q86SE8 214 aaKnown RBP13.08□□□□□ -0.32
COL17A1-203ENST00000393211 ZCCHC11Q5TAX3 1644 aaKnown RBP13.08□□□□□ -0.32
COL17A1-203ENST00000393211 PLEKHH1Q9ULM0 1364 aa13.07□□□□□ -0.32
COL17A1-203ENST00000393211 TRMT2AQ8IZ69 625 aaKnown RBP13.07□□□□□ -0.32
COL17A1-203ENST00000393211 VWDEQ8N2E2 1590 aa13.07□□□□□ -0.32
COL17A1-203ENST00000393211 CLTCL1P53675 1640 aa13.06□□□□□ -0.32
COL17A1-203ENST00000393211 ZFYVE16Q7Z3T8 1539 aa13.06□□□□□ -0.32
COL17A1-203ENST00000393211 SLFN5Q08AF3 891 aa13.06□□□□□ -0.32
COL17A1-203ENST00000393211 TRAPPC8Q9Y2L5 1435 aa13.05□□□□□ -0.32
COL17A1-203ENST00000393211 MYOM2P54296 1465 aa13.05□□□□□ -0.32
COL17A1-203ENST00000393211 KANK1Q14678 1352 aa13.05□□□□□ -0.32
COL17A1-203ENST00000393211 FAM161AQ3B820 660 aa13.04□□□□□ -0.32
COL17A1-203ENST00000393211 SPAG9O60271 1321 aaKnown RBP13.04□□□□□ -0.32
COL17A1-203ENST00000393211 NINLQ9Y2I6 1382 aa13.04□□□□□ -0.32
COL17A1-203ENST00000393211 NKTRP30414 1462 aaKnown RBP13.04□□□□□ -0.32
COL17A1-203ENST00000393211 NEFMP07197 916 aa13.03□□□□□ -0.32
COL17A1-203ENST00000393211 C20orf194Q5TEA3 1177 aa13.02□□□□□ -0.33
COL17A1-203ENST00000393211 SBNO2Q9Y2G9 1366 aa13.02□□□□□ -0.33
COL17A1-203ENST00000393211 INO80Q9ULG1 1556 aaPredicted RBP13.01□□□□□ -0.33
COL17A1-203ENST00000393211 MYO3AQ8NEV4 1616 aa13.01□□□□□ -0.33
COL17A1-203ENST00000393211 MAP3K4Q9Y6R4 1608 aa13.01□□□□□ -0.33
COL17A1-203ENST00000393211 E9PSI1 815 aa13.01□□□□□ -0.33
COL17A1-203ENST00000393211 ERCC6L2Q5T890 1561 aa13.01□□□□□ -0.33
COL17A1-203ENST00000393211 AAMPQ13685 434 aa12.99□□□□□ -0.33
COL17A1-203ENST00000393211 ATP7AQ04656 1500 aa12.99□□□□□ -0.33
COL17A1-203ENST00000393211 DAXXQ9UER7 740 aaPredicted RBP12.99□□□□□ -0.33
COL17A1-203ENST00000393211 LAS1LQ9Y4W2 734 aaKnown RBP12.99□□□□□ -0.33
COL17A1-203ENST00000393211 IFT172Q9UG01 1749 aa12.98□□□□□ -0.33
COL17A1-203ENST00000393211 ABCA9Q8IUA7 1624 aa12.98□□□□□ -0.33
COL17A1-203ENST00000393211 ERVK-7P63135 1459 aa12.98□□□□□ -0.33
COL17A1-203ENST00000393211 KIF1BO60333 1816 aa12.98□□□□□ -0.33
COL17A1-203ENST00000393211 POLR3AO14802 1390 aaPredicted RBP12.98□□□□□ -0.33
COL17A1-203ENST00000393211 PDE3AQ14432 1141 aa12.98□□□□□ -0.33
COL17A1-203ENST00000393211 C8orf34Q49A92 452 aa12.98□□□□□ -0.33
COL17A1-203ENST00000393211 NRXN1Q9ULB1 1477 aa12.97□□□□□ -0.33
COL17A1-203ENST00000393211 ABCA6Q8N139 1617 aa12.97□□□□□ -0.33
COL17A1-203ENST00000393211 CGNL1Q0VF96 1302 aa12.97□□□□□ -0.33
COL17A1-203ENST00000393211 SETBP1Q9Y6X0 1596 aa12.97□□□□□ -0.33
COL17A1-203ENST00000393211 VIRMAQ69YN4 1812 aaKnown RBP12.97□□□□□ -0.33
COL17A1-203ENST00000393211 NCBP3Q53F19 620 aaKnown RBP12.95□□□□□ -0.34
COL17A1-203ENST00000393211 ZMYM3Q14202 1370 aa12.95□□□□□ -0.34
COL17A1-203ENST00000393211 LMTK2Q8IWU2 1503 aa12.95□□□□□ -0.34
COL17A1-203ENST00000393211 MROH1Q8NDA8 1641 aa12.95□□□□□ -0.34
COL17A1-203ENST00000393211 EFCAB6Q5THR3 1501 aa12.94□□□□□ -0.34
COL17A1-203ENST00000393211 APAF1O14727 1248 aa12.94□□□□□ -0.34
COL17A1-203ENST00000393211 USP32Q8NFA0 1604 aa12.93□□□□□ -0.34
COL17A1-203ENST00000393211 MAPK8IP3Q9UPT6 1336 aa12.93□□□□□ -0.34
COL17A1-203ENST00000393211 AFAP1Q8N556 730 aa12.93□□□□□ -0.34
COL17A1-203ENST00000393211 FANCAO15360 1455 aa12.93□□□□□ -0.34
COL17A1-203ENST00000393211 GSE1Q14687 1217 aa12.92□□□□□ -0.34
COL17A1-203ENST00000393211 NFKBIBQ15653 356 aa12.92□□□□□ -0.34
COL17A1-203ENST00000393211 SKAP1Q86WV1 359 aa12.91□□□□□ -0.34
COL17A1-203ENST00000393211 CCDC146Q8IYE0 955 aa12.91□□□□□ -0.34
COL17A1-203ENST00000393211 CENPJQ9HC77 1338 aaPredicted RBP12.9□□□□□ -0.34
COL17A1-203ENST00000393211 PUS7Q96PZ0 661 aaKnown RBP12.9□□□□□ -0.34
COL17A1-203ENST00000393211 CARD14Q9BXL6 1004 aa12.9□□□□□ -0.34
COL17A1-203ENST00000393211 SPINK5Q9NQ38 1064 aaPredicted RBP12.9□□□□□ -0.34
COL17A1-203ENST00000393211 ADGRB3O60242 1522 aa12.9□□□□□ -0.34
COL17A1-203ENST00000393211 SHPRHQ149N8 1683 aa12.89□□□□□ -0.35
COL17A1-203ENST00000393211 ZC3H13Q5T200 1668 aaKnown RBP12.89□□□□□ -0.35
COL17A1-203ENST00000393211 CFAP70Q5T0N1 1121 aa12.89□□□□□ -0.35
COL17A1-203ENST00000393211 KIF3BO15066 747 aa12.88□□□□□ -0.35
COL17A1-203ENST00000393211 BCAR3O75815 825 aa12.88□□□□□ -0.35
COL17A1-203ENST00000393211 WDR63Q8IWG1 891 aa12.88□□□□□ -0.35
COL17A1-203ENST00000393211 WWC1Q8IX03 1113 aa12.88□□□□□ -0.35
COL17A1-203ENST00000393211 CLUAP1Q96AJ1 413 aa12.88□□□□□ -0.35
COL17A1-203ENST00000393211 ADGRF5Q8IZF2 1346 aa12.88□□□□□ -0.35
COL17A1-203ENST00000393211 ADGRL1O94910 1474 aa12.88□□□□□ -0.35
COL17A1-203ENST00000393211 MROH2AA6NES4 1674 aa12.88□□□□□ -0.35
COL17A1-203ENST00000393211 CCDC27Q2M243 656 aa12.88□□□□□ -0.35
COL17A1-203ENST00000393211 PMFBP1Q8TBY8 1022 aa12.88□□□□□ -0.35
COL17A1-203ENST00000393211 RUNDC1Q96C34 613 aa12.88□□□□□ -0.35
COL17A1-203ENST00000393211 IQSEC2Q5JU85 1478 aa12.87□□□□□ -0.35
COL17A1-203ENST00000393211 PPRC1Q5VV67 1664 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms