RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 TRPM2O94759 1503 aa12.85□□□□□ -0.35
COL6A3-204ENST00000392003 PER1O15534 1290 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-204ENST00000392003 KNSTRNQ9Y448 316 aa12.84□□□□□ -0.35
COL6A3-204ENST00000392003 ZNF518AQ6AHZ1 1483 aa12.84□□□□□ -0.35
COL6A3-204ENST00000392003 ABCA9Q8IUA7 1624 aa12.83□□□□□ -0.35
COL6A3-204ENST00000392003 EIF3AQ14152 1382 aaKnown RBP12.83□□□□□ -0.36
COL6A3-204ENST00000392003 PTPRTO14522 1441 aa12.83□□□□□ -0.36
COL6A3-204ENST00000392003 TET3O43151 1660 aa12.83□□□□□ -0.36
COL6A3-204ENST00000392003 BCL11BQ9C0K0 894 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-204ENST00000392003 PDE3BQ13370 1112 aa12.82□□□□□ -0.36
COL6A3-204ENST00000392003 SPHKAPQ2M3C7 1700 aa12.82□□□□□ -0.36
COL6A3-204ENST00000392003 ZMYND15Q9H091 742 aa12.82□□□□□ -0.36
COL6A3-204ENST00000392003 INO80Q9ULG1 1556 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-204ENST00000392003 PDIA4P13667 645 aaKnown RBP12.81□□□□□ -0.36
COL6A3-204ENST00000392003 SCAF11Q99590 1463 aaKnown RBP12.8□□□□□ -0.36
COL6A3-204ENST00000392003 DEPDC5O75140 1603 aa12.8□□□□□ -0.36
COL6A3-204ENST00000392003 RNF17Q9BXT8 1623 aaKnown RBP12.8□□□□□ -0.36
COL6A3-204ENST00000392003 MADDQ8WXG6 1647 aa12.8□□□□□ -0.36
COL6A3-204ENST00000392003 CEP152O94986 1710 aa12.79□□□□□ -0.36
COL6A3-204ENST00000392003 RNF123Q5XPI4 1314 aa12.79□□□□□ -0.36
COL6A3-204ENST00000392003 CLTCL1P53675 1640 aa12.79□□□□□ -0.36
COL6A3-204ENST00000392003 SENP3Q9H4L4 574 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-204ENST00000392003 WDR43Q15061 677 aaKnown RBP eCLIP12.77□□□□□ -0.36
COL6A3-204ENST00000392003 RCAN3Q9UKA8 241 aa12.77□□□□□ -0.37
COL6A3-204ENST00000392003 POGZQ7Z3K3 1410 aa12.77□□□□□ -0.37
COL6A3-204ENST00000392003 STAG3Q9UJ98 1225 aa12.76□□□□□ -0.37
COL6A3-204ENST00000392003 VWDEQ8N2E2 1590 aa12.76□□□□□ -0.37
COL6A3-204ENST00000392003 MLECQ14165 292 aa12.75□□□□□ -0.37
COL6A3-204ENST00000392003 ESF1Q9H501 851 aaKnown RBP12.75□□□□□ -0.37
COL6A3-204ENST00000392003 INSRP06213 1382 aa12.75□□□□□ -0.37
COL6A3-204ENST00000392003 IQGAP1P46940 1657 aa12.75□□□□□ -0.37
COL6A3-204ENST00000392003 CFAP70Q5T0N1 1121 aa12.75□□□□□ -0.37
COL6A3-204ENST00000392003 RRP1P56182 461 aaKnown RBP12.74□□□□□ -0.37
COL6A3-204ENST00000392003 FGD1P98174 961 aa12.74□□□□□ -0.37
COL6A3-204ENST00000392003 NUTM2DQ5VT03 806 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-204ENST00000392003 VSIG10Q8N0Z9 540 aa12.74□□□□□ -0.37
COL6A3-204ENST00000392003 NBR1Q14596 966 aa12.73□□□□□ -0.37
COL6A3-204ENST00000392003 FANCIQ9NVI1 1328 aa12.73□□□□□ -0.37
COL6A3-204ENST00000392003 NEO1Q92859 1461 aa12.73□□□□□ -0.37
COL6A3-204ENST00000392003 CFAP74Q9C0B2 1584 aa12.73□□□□□ -0.37
COL6A3-204ENST00000392003 NEURL4Q96JN8 1562 aa12.72□□□□□ -0.37
COL6A3-204ENST00000392003 EFCAB6Q5THR3 1501 aa12.72□□□□□ -0.37
COL6A3-204ENST00000392003 PPP2R1AP30153 589 aa12.72□□□□□ -0.37
COL6A3-204ENST00000392003 KIF1BO60333 1816 aa12.72□□□□□ -0.37
COL6A3-204ENST00000392003 ADGRF5Q8IZF2 1346 aa12.72□□□□□ -0.37
COL6A3-204ENST00000392003 ZMYM4Q5VZL5 1548 aa12.72□□□□□ -0.37
COL6A3-204ENST00000392003 MYOM2P54296 1465 aa12.71□□□□□ -0.37
COL6A3-204ENST00000392003 KIDINS220Q9ULH0 1771 aa12.71□□□□□ -0.37
COL6A3-204ENST00000392003 SYNMO15061 1565 aa12.71□□□□□ -0.37
COL6A3-204ENST00000392003 MLH3Q9UHC1 1453 aa12.71□□□□□ -0.38
COL6A3-204ENST00000392003 KIAA1210Q9ULL0 1709 aa12.71□□□□□ -0.38
COL6A3-204ENST00000392003 AMER1Q5JTC6 1135 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-204ENST00000392003 BLMP54132 1417 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-204ENST00000392003 MROH1Q8NDA8 1641 aa12.7□□□□□ -0.38
COL6A3-204ENST00000392003 ASXL1Q8IXJ9 1541 aa12.7□□□□□ -0.38
COL6A3-204ENST00000392003 MAP3K4Q9Y6R4 1608 aa12.7□□□□□ -0.38
COL6A3-204ENST00000392003 ADAMTS8Q9UP79 889 aa12.7□□□□□ -0.38
COL6A3-204ENST00000392003 UGGT1Q9NYU2 1555 aa12.69□□□□□ -0.38
COL6A3-204ENST00000392003 CDCA7LQ96GN5 454 aa12.69□□□□□ -0.38
COL6A3-204ENST00000392003 TRAK1Q9UPV9 953 aa12.69□□□□□ -0.38
COL6A3-204ENST00000392003 LMTK2Q8IWU2 1503 aa12.69□□□□□ -0.38
COL6A3-204ENST00000392003 RBM10P98175 930 aaKnown RBP12.68□□□□□ -0.38
COL6A3-204ENST00000392003 KDM5AP29375 1690 aaKnown RBP12.68□□□□□ -0.38
COL6A3-204ENST00000392003 NPC1L1Q9UHC9 1359 aa12.68□□□□□ -0.38
COL6A3-204ENST00000392003 VGFO15240 615 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-204ENST00000392003 CENPJQ9HC77 1338 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-204ENST00000392003 AAMPQ13685 434 aa12.67□□□□□ -0.38
COL6A3-204ENST00000392003 NOS1P29475 1434 aa12.67□□□□□ -0.38
COL6A3-204ENST00000392003 PPRC1Q5VV67 1664 aaKnown RBP12.67□□□□□ -0.38
COL6A3-204ENST00000392003 EXOC6Q8TAG9 804 aa12.67□□□□□ -0.38
COL6A3-204ENST00000392003 RPGRIP1LQ68CZ1 1315 aa12.66□□□□□ -0.38
COL6A3-204ENST00000392003 TMEM132EQ6IEE7 984 aa12.66□□□□□ -0.38
COL6A3-204ENST00000392003 ABCA6Q8N139 1617 aa12.66□□□□□ -0.38
COL6A3-204ENST00000392003 HECW2Q9P2P5 1572 aa12.65□□□□□ -0.38
COL6A3-204ENST00000392003 PIK3C2GO75747 1445 aa12.65□□□□□ -0.38
COL6A3-204ENST00000392003 YEATS2Q9ULM3 1422 aa12.65□□□□□ -0.38
COL6A3-204ENST00000392003 STK26Q9P289 416 aa12.64□□□□□ -0.39
COL6A3-204ENST00000392003 NPATQ14207 1427 aa12.64□□□□□ -0.39
COL6A3-204ENST00000392003 IDI1Q13907 227 aa12.64□□□□□ -0.39
COL6A3-204ENST00000392003 SLC52A1Q9NWF4 448 aa12.64□□□□□ -0.39
COL6A3-204ENST00000392003 GOLGA2Q08379 1002 aa12.63□□□□□ -0.39
COL6A3-204ENST00000392003 SAFB2Q14151 953 aaKnown RBP eCLIP12.63□□□□□ -0.39
COL6A3-204ENST00000392003 RIMBP3CA6NJZ7 1639 aa12.63□□□□□ -0.39
COL6A3-204ENST00000392003 RIMBP3BA6NNM3 1639 aa12.63□□□□□ -0.39
COL6A3-204ENST00000392003 RIMBP3Q9UFD9 1639 aa12.63□□□□□ -0.39
COL6A3-204ENST00000392003 ERVK-7P63135 1459 aa12.63□□□□□ -0.39
COL6A3-204ENST00000392003 CFAP65Q6ZU64 1925 aaKnown RBP12.63□□□□□ -0.39
COL6A3-204ENST00000392003 ADGRB3O60242 1522 aa12.63□□□□□ -0.39
COL6A3-204ENST00000392003 SBNO2Q9Y2G9 1366 aa12.63□□□□□ -0.39
COL6A3-204ENST00000392003 PLPPR3Q6T4P5 718 aa12.63□□□□□ -0.39
COL6A3-204ENST00000392003 C14orf93Q9H972 538 aaKnown RBP12.63□□□□□ -0.39
COL6A3-204ENST00000392003 FBXO31Q5XUX0 539 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-204ENST00000392003 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-204ENST00000392003 MROH2AA6NES4 1674 aa12.61□□□□□ -0.39
COL6A3-204ENST00000392003 NRXN1Q9ULB1 1477 aa12.61□□□□□ -0.39
COL6A3-204ENST00000392003 ANP32AP39687 249 aaKnown RBP12.61□□□□□ -0.39
COL6A3-204ENST00000392003 IFT172Q9UG01 1749 aa12.61□□□□□ -0.39
COL6A3-204ENST00000392003 TRHP20396 242 aaPredicted RBP12.6□□□□□ -0.39
COL6A3-204ENST00000392003 PLIN1O60240 522 aa12.6□□□□□ -0.39
COL6A3-204ENST00000392003 MORC1Q86VD1 984 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms