RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 FOXD4L6Q3SYB3 417 aaPredicted RBP17.76■□□□□ 0.43
RTF1-201ENST00000389629 FOXD4L3Q6VB84 417 aaPredicted RBP17.76■□□□□ 0.43
RTF1-201ENST00000389629 NGEFQ8N5V2 710 aa17.76■□□□□ 0.43
RTF1-201ENST00000389629 PDZRN3Q9UPQ7 1066 aa17.76■□□□□ 0.43
RTF1-201ENST00000389629 R3HCC1Q9Y3T6 440 aaKnown RBP17.76■□□□□ 0.43
RTF1-201ENST00000389629 RUNDC1Q96C34 613 aa17.75■□□□□ 0.43
RTF1-201ENST00000389629 CUL7Q14999 1698 aa17.75■□□□□ 0.43
RTF1-201ENST00000389629 ANKRD45Q5TZF3 282 aa17.74■□□□□ 0.43
RTF1-201ENST00000389629 DRC7Q8IY82 874 aa17.74■□□□□ 0.43
RTF1-201ENST00000389629 ERBINQ96RT1 1412 aa17.74■□□□□ 0.43
RTF1-201ENST00000389629 PDE3AQ14432 1141 aa17.74■□□□□ 0.43
RTF1-201ENST00000389629 GRIN2BQ13224 1484 aa17.73■□□□□ 0.43
RTF1-201ENST00000389629 PTPRGP23470 1445 aa17.73■□□□□ 0.43
RTF1-201ENST00000389629 SLFN5Q08AF3 891 aa17.73■□□□□ 0.43
RTF1-201ENST00000389629 DHX29Q7Z478 1369 aaKnown RBP17.72■□□□□ 0.43
RTF1-201ENST00000389629 TCP11L2Q8N4U5 519 aa17.72■□□□□ 0.43
RTF1-201ENST00000389629 A0A0U1RQG5 324 aaPredicted RBP17.72■□□□□ 0.43
RTF1-201ENST00000389629 ELL2O00472 640 aaPredicted RBP17.72■□□□□ 0.43
RTF1-201ENST00000389629 UGGT2Q9NYU1 1516 aa17.72■□□□□ 0.43
RTF1-201ENST00000389629 NASPP49321 788 aaPredicted RBP17.71■□□□□ 0.43
RTF1-201ENST00000389629 ESPNB1AK53 854 aa17.71■□□□□ 0.42
RTF1-201ENST00000389629 LNPKQ9C0E8 428 aa17.71■□□□□ 0.42
RTF1-201ENST00000389629 DDX19BQ9UMR2 479 aa17.71■□□□□ 0.42
RTF1-201ENST00000389629 MCM4P33991 863 aa17.7■□□□□ 0.42
RTF1-201ENST00000389629 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.7■□□□□ 0.42
RTF1-201ENST00000389629 DUSP27Q5VZP5 1158 aa17.69■□□□□ 0.42
RTF1-201ENST00000389629 GRPEL1Q9HAV7 217 aa17.69■□□□□ 0.42
RTF1-201ENST00000389629 GOLGA6L4A6NEF3 574 aa17.69■□□□□ 0.42
RTF1-201ENST00000389629 RRP9O43818 475 aaKnown RBP17.69■□□□□ 0.42
RTF1-201ENST00000389629 PLPPR3Q6T4P5 718 aa17.69■□□□□ 0.42
RTF1-201ENST00000389629 HDGFL2Q7Z4V5 671 aaPredicted RBP17.69■□□□□ 0.42
RTF1-201ENST00000389629 CAMSAP2Q08AD1 1489 aa17.68■□□□□ 0.42
RTF1-201ENST00000389629 CC2D2AQ9P2K1 1620 aa17.68■□□□□ 0.42
RTF1-201ENST00000389629 SNAPC4Q5SXM2 1469 aa17.68■□□□□ 0.42
RTF1-201ENST00000389629 MCCP23508 829 aa17.68■□□□□ 0.42
RTF1-201ENST00000389629 SYAP1Q96A49 352 aaPredicted RBP17.68■□□□□ 0.42
RTF1-201ENST00000389629 CFAP70Q5T0N1 1121 aa17.67■□□□□ 0.42
RTF1-201ENST00000389629 ZRSR1Q15695 479 aaKnown RBP17.67■□□□□ 0.42
RTF1-201ENST00000389629 MCTP1Q6DN14 999 aa17.67■□□□□ 0.42
RTF1-201ENST00000389629 CFAP44Q96MT7 982 aa17.67■□□□□ 0.42
RTF1-201ENST00000389629 RNF123Q5XPI4 1314 aa17.66■□□□□ 0.42
RTF1-201ENST00000389629 MTHFSP49914 203 aa17.66■□□□□ 0.42
RTF1-201ENST00000389629 SOX12O15370 315 aa17.65■□□□□ 0.42
RTF1-201ENST00000389629 ZMYND15Q9H091 742 aa17.65■□□□□ 0.42
RTF1-201ENST00000389629 IQGAP2Q13576 1575 aa17.65■□□□□ 0.42
RTF1-201ENST00000389629 THOC2Q8NI27 1593 aaKnown RBP17.65■□□□□ 0.42
RTF1-201ENST00000389629 KIAA1211Q6ZU35 1233 aa17.65■□□□□ 0.42
RTF1-201ENST00000389629 TPM2P07951 284 aa17.64■□□□□ 0.42
RTF1-201ENST00000389629 ST18O60284 1047 aa17.64■□□□□ 0.41
RTF1-201ENST00000389629 AAMPQ13685 434 aa17.64■□□□□ 0.41
RTF1-201ENST00000389629 KCNJ4P48050 445 aa17.63■□□□□ 0.41
RTF1-201ENST00000389629 TAOK2Q9UL54 1235 aa17.63■□□□□ 0.41
RTF1-201ENST00000389629 RNF214Q8ND24 703 aa17.63■□□□□ 0.41
RTF1-201ENST00000389629 TERF2IPQ9NYB0 399 aa17.63■□□□□ 0.41
RTF1-201ENST00000389629 RIPK4P57078 832 aa17.62■□□□□ 0.41
RTF1-201ENST00000389629 DISP3Q9P2K9 1392 aa17.62■□□□□ 0.41
RTF1-201ENST00000389629 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.61■□□□□ 0.41
RTF1-201ENST00000389629 CAVIN1Q6NZI2 390 aaKnown RBP17.61■□□□□ 0.41
RTF1-201ENST00000389629 IGHDP01880 384 aa17.61■□□□□ 0.41
RTF1-201ENST00000389629 TSR2Q969E8 191 aaKnown RBP17.61■□□□□ 0.41
RTF1-201ENST00000389629 C8orf34Q49A92 452 aa17.61■□□□□ 0.41
RTF1-201ENST00000389629 WWC1Q8IX03 1113 aa17.6■□□□□ 0.41
RTF1-201ENST00000389629 PLEKHG5O94827 1062 aa17.6■□□□□ 0.41
RTF1-201ENST00000389629 TCOF1Q13428 1488 aaKnown RBP17.59■□□□□ 0.41
RTF1-201ENST00000389629 EXOSC9Q06265 439 aaKnown RBP17.59■□□□□ 0.41
RTF1-201ENST00000389629 TMEM132EQ6IEE7 984 aa17.58■□□□□ 0.41
RTF1-201ENST00000389629 SLC12A5Q9H2X9 1139 aa17.58■□□□□ 0.41
RTF1-201ENST00000389629 PLEKHH2Q8IVE3 1493 aa17.58■□□□□ 0.41
RTF1-201ENST00000389629 EVC2Q86UK5 1308 aa17.58■□□□□ 0.41
RTF1-201ENST00000389629 OS9Q13438 667 aaPredicted RBP17.58■□□□□ 0.4
RTF1-201ENST00000389629 TRIM6-TRIM34B2RNG4 842 aa17.58■□□□□ 0.4
RTF1-201ENST00000389629 PANK2Q9BZ23 570 aa17.58■□□□□ 0.4
RTF1-201ENST00000389629 PARD3Q8TEW0 1356 aa17.58■□□□□ 0.4
RTF1-201ENST00000389629 STAC3Q96MF2 364 aa17.57■□□□□ 0.4
RTF1-201ENST00000389629 RALGAPBQ86X10 1494 aa17.57■□□□□ 0.4
RTF1-201ENST00000389629 C14orf37Q86TY3 774 aa17.57■□□□□ 0.4
RTF1-201ENST00000389629 TBC1D2Q9BYX2 928 aa17.57■□□□□ 0.4
RTF1-201ENST00000389629 CSPP1Q1MSJ5 1256 aa17.57■□□□□ 0.4
RTF1-201ENST00000389629 MPNDQ8N594 471 aa17.57■□□□□ 0.4
RTF1-201ENST00000389629 PLB1Q6P1J6 1458 aa17.57■□□□□ 0.4
RTF1-201ENST00000389629 HAP1P54257 671 aaPredicted RBP17.56■□□□□ 0.4
RTF1-201ENST00000389629 LRPPRCP42704 1394 aaKnown RBP17.56■□□□□ 0.4
RTF1-201ENST00000389629 AFAP1Q8N556 730 aa17.56■□□□□ 0.4
RTF1-201ENST00000389629 URB2Q14146 1524 aaKnown RBP17.56■□□□□ 0.4
RTF1-201ENST00000389629 SLC4A10Q6U841 1118 aa17.56■□□□□ 0.4
RTF1-201ENST00000389629 GGNBP2Q9H3C7 697 aa17.56■□□□□ 0.4
RTF1-201ENST00000389629 NKTRP30414 1462 aaKnown RBP17.55■□□□□ 0.4
RTF1-201ENST00000389629 TEX14Q8IWB6 1497 aa17.55■□□□□ 0.4
RTF1-201ENST00000389629 ARHGEF11O15085 1522 aa17.55■□□□□ 0.4
RTF1-201ENST00000389629 CCDC173Q0VFZ6 552 aa17.55■□□□□ 0.4
RTF1-201ENST00000389629 ARHGAP5Q13017 1502 aa17.55■□□□□ 0.4
RTF1-201ENST00000389629 MVPQ14764 893 aaKnown RBP17.55■□□□□ 0.4
RTF1-201ENST00000389629 FGD1P98174 961 aa17.55■□□□□ 0.4
RTF1-201ENST00000389629 KIAA0586Q9BVV6 1533 aa17.55■□□□□ 0.4
RTF1-201ENST00000389629 PODXL2Q9NZ53 605 aa17.55■□□□□ 0.4
RTF1-201ENST00000389629 KIF16BQ96L93 1317 aa17.55■□□□□ 0.4
RTF1-201ENST00000389629 NINLQ9Y2I6 1382 aa17.54■□□□□ 0.4
RTF1-201ENST00000389629 XRCC6P12956 609 aaKnown RBP eCLIP17.54■□□□□ 0.4
RTF1-201ENST00000389629 DIAPH1O60610 1272 aaKnown RBP17.54■□□□□ 0.4
RTF1-201ENST00000389629 NAP1L2Q9ULW6 460 aaPredicted RBP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms