RNA–Protein interactions for RNA: ENST00000379989.6

CDKL5-201, Transcript of cyclin dependent kinase like 5, humanhuman

TSL 1 (best) BASIC

Gene CDKL5, Length 3,463 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-201ENST00000379989 NEO1Q92859 1461 aa9.74□□□□□ -0.85
CDKL5-201ENST00000379989 GLI2P10070 1586 aa9.74□□□□□ -0.85
CDKL5-201ENST00000379989 EIF4G2P78344 907 aaKnown RBP eCLIP9.73□□□□□ -0.85
CDKL5-201ENST00000379989 VWDEQ8N2E2 1590 aa9.73□□□□□ -0.85
CDKL5-201ENST00000379989 ROCK2O75116 1388 aaKnown RBP9.73□□□□□ -0.85
CDKL5-201ENST00000379989 NUP155O75694 1391 aa9.73□□□□□ -0.85
CDKL5-201ENST00000379989 PLPPR3Q6T4P5 718 aa9.73□□□□□ -0.85
CDKL5-201ENST00000379989 TET3O43151 1660 aa9.73□□□□□ -0.85
CDKL5-201ENST00000379989 FAM9BQ8IZU0 186 aa9.73□□□□□ -0.85
CDKL5-201ENST00000379989 LMTK2Q8IWU2 1503 aa9.72□□□□□ -0.85
CDKL5-201ENST00000379989 SMAP1Q8IYB5 467 aaPredicted RBP9.72□□□□□ -0.85
CDKL5-201ENST00000379989 MAP3K4Q9Y6R4 1608 aa9.72□□□□□ -0.85
CDKL5-201ENST00000379989 XRCC6P12956 609 aaKnown RBP eCLIP9.72□□□□□ -0.85
CDKL5-201ENST00000379989 PRDM15P57071 1507 aaPredicted RBP9.72□□□□□ -0.85
CDKL5-201ENST00000379989 ATP7AQ04656 1500 aa9.72□□□□□ -0.85
CDKL5-201ENST00000379989 ZNF777Q9ULD5 760 aaPredicted RBP9.71□□□□□ -0.85
CDKL5-201ENST00000379989 FANCAO15360 1455 aa9.71□□□□□ -0.85
CDKL5-201ENST00000379989 ZNF518AQ6AHZ1 1483 aa9.71□□□□□ -0.85
CDKL5-201ENST00000379989 KDM5CP41229 1560 aa9.71□□□□□ -0.86
CDKL5-201ENST00000379989 NPM1P06748 294 aaKnown RBP eCLIP9.71□□□□□ -0.86
CDKL5-201ENST00000379989 CNGB1Q14028 1251 aaPredicted RBP9.71□□□□□ -0.86
CDKL5-201ENST00000379989 SPATA31E1Q6ZUB1 1445 aa9.71□□□□□ -0.86
CDKL5-201ENST00000379989 RNF17Q9BXT8 1623 aaKnown RBP9.71□□□□□ -0.86
CDKL5-201ENST00000379989 ZNF326Q5BKZ1 582 aaKnown RBP9.7□□□□□ -0.86
CDKL5-201ENST00000379989 PANK2Q9BZ23 570 aa9.7□□□□□ -0.86
CDKL5-201ENST00000379989 ASXL2Q76L83 1435 aa9.7□□□□□ -0.86
CDKL5-201ENST00000379989 KANK1Q14678 1352 aa9.7□□□□□ -0.86
CDKL5-201ENST00000379989 KTN1Q86UP2 1357 aaKnown RBP9.7□□□□□ -0.86
CDKL5-201ENST00000379989 MLH3Q9UHC1 1453 aa9.7□□□□□ -0.86
CDKL5-201ENST00000379989 ERBB4Q15303 1308 aa9.7□□□□□ -0.86
CDKL5-201ENST00000379989 NCBP3Q53F19 620 aaKnown RBP9.69□□□□□ -0.86
CDKL5-201ENST00000379989 NUDCQ9Y266 331 aa9.69□□□□□ -0.86
CDKL5-201ENST00000379989 TRPM2O94759 1503 aa9.69□□□□□ -0.86
CDKL5-201ENST00000379989 KIAA1210Q9ULL0 1709 aa9.69□□□□□ -0.86
CDKL5-201ENST00000379989 DIP2BQ9P265 1576 aa9.69□□□□□ -0.86
CDKL5-201ENST00000379989 ARID3CA6NKF2 412 aa9.69□□□□□ -0.86
CDKL5-201ENST00000379989 PKD2Q13563 968 aa9.68□□□□□ -0.86
CDKL5-201ENST00000379989 L3MBTL2Q969R5 705 aa9.68□□□□□ -0.86
CDKL5-201ENST00000379989 TMEM51Q9NW97 253 aa9.68□□□□□ -0.86
CDKL5-201ENST00000379989 CCDC144AA2RUR9 1427 aa9.68□□□□□ -0.86
CDKL5-201ENST00000379989 PTPRTO14522 1441 aa9.68□□□□□ -0.86
CDKL5-201ENST00000379989 ESPNB1AK53 854 aa9.68□□□□□ -0.86
CDKL5-201ENST00000379989 HNRNPMP52272 730 aaKnown RBP eCLIP9.68□□□□□ -0.86
CDKL5-201ENST00000379989 ARXQ96QS3 562 aa9.68□□□□□ -0.86
CDKL5-201ENST00000379989 CEP152O94986 1710 aa9.67□□□□□ -0.86
CDKL5-201ENST00000379989 ADGRL1O94910 1474 aa9.67□□□□□ -0.86
CDKL5-201ENST00000379989 GPRASP1Q5JY77 1395 aa9.67□□□□□ -0.86
CDKL5-201ENST00000379989 ZNF830Q96NB3 372 aaPredicted RBP9.67□□□□□ -0.86
CDKL5-201ENST00000379989 SPAG9O60271 1321 aaKnown RBP9.67□□□□□ -0.86
CDKL5-201ENST00000379989 CNTLNQ9NXG0 1405 aa9.66□□□□□ -0.86
CDKL5-201ENST00000379989 FSD2A1L4K1 749 aa9.66□□□□□ -0.86
CDKL5-201ENST00000379989 DHX29Q7Z478 1369 aaKnown RBP9.66□□□□□ -0.86
CDKL5-201ENST00000379989 RIPK4P57078 832 aa9.66□□□□□ -0.86
CDKL5-201ENST00000379989 ZC3H13Q5T200 1668 aaKnown RBP9.66□□□□□ -0.86
CDKL5-201ENST00000379989 SPHKAPQ2M3C7 1700 aa9.66□□□□□ -0.86
CDKL5-201ENST00000379989 KIAA1211Q6ZU35 1233 aa9.66□□□□□ -0.86
CDKL5-201ENST00000379989 MRS2Q9HD23 443 aa9.66□□□□□ -0.86
CDKL5-201ENST00000379989 UTP14CQ5TAP6 766 aaKnown RBP9.65□□□□□ -0.86
CDKL5-201ENST00000379989 TRPM1Q7Z4N2 1603 aa9.65□□□□□ -0.86
CDKL5-201ENST00000379989 HECW2Q9P2P5 1572 aa9.65□□□□□ -0.86
CDKL5-201ENST00000379989 PLCD3Q8N3E9 789 aa9.65□□□□□ -0.86
CDKL5-201ENST00000379989 EXOC6Q8TAG9 804 aa9.65□□□□□ -0.87
CDKL5-201ENST00000379989 PRDM10Q9NQV6 1147 aa9.65□□□□□ -0.87
CDKL5-201ENST00000379989 GOLGA6L3A6NEY3 463 aa9.64□□□□□ -0.87
CDKL5-201ENST00000379989 NCLP19338 710 aaKnown RBP9.64□□□□□ -0.87
CDKL5-201ENST00000379989 DMTNQ08495 405 aa9.64□□□□□ -0.87
CDKL5-201ENST00000379989 SKAP1Q86WV1 359 aa9.64□□□□□ -0.87
CDKL5-201ENST00000379989 ZFP91Q96JP5 570 aaPredicted RBP9.64□□□□□ -0.87
CDKL5-201ENST00000379989 MAP7D2Q96T17 732 aa9.64□□□□□ -0.87
CDKL5-201ENST00000379989 POGZQ7Z3K3 1410 aa9.64□□□□□ -0.87
CDKL5-201ENST00000379989 TRAPPC8Q9Y2L5 1435 aa9.64□□□□□ -0.87
CDKL5-201ENST00000379989 REREQ9P2R6 1566 aa9.64□□□□□ -0.87
CDKL5-201ENST00000379989 CCDC7Q96M83 1385 aa9.64□□□□□ -0.87
CDKL5-201ENST00000379989 VGLL3A8MV65 326 aa9.63□□□□□ -0.87
CDKL5-201ENST00000379989 PPP4R3BQ5MIZ7 849 aa9.63□□□□□ -0.87
CDKL5-201ENST00000379989 FTSJ3Q8IY81 847 aaKnown RBP9.63□□□□□ -0.87
CDKL5-201ENST00000379989 KIDINS220Q9ULH0 1771 aa9.62□□□□□ -0.87
CDKL5-201ENST00000379989 DHX37Q8IY37 1157 aaKnown RBP9.62□□□□□ -0.87
CDKL5-201ENST00000379989 PRKRIP1Q9H875 184 aaPredicted RBP9.62□□□□□ -0.87
CDKL5-201ENST00000379989 SCAPERQ9BY12 1400 aa9.62□□□□□ -0.87
CDKL5-201ENST00000379989 E9PCH4 1651 aa9.62□□□□□ -0.87
CDKL5-201ENST00000379989 PRAG1Q86YV5 1406 aa9.62□□□□□ -0.87
CDKL5-201ENST00000379989 ZMYM4Q5VZL5 1548 aa9.62□□□□□ -0.87
CDKL5-201ENST00000379989 HSPA5P11021 654 aaKnown RBP9.62□□□□□ -0.87
CDKL5-201ENST00000379989 CD109Q6YHK3 1445 aa9.62□□□□□ -0.87
CDKL5-201ENST00000379989 EFCAB6Q5THR3 1501 aa9.61□□□□□ -0.87
CDKL5-201ENST00000379989 MYOM2P54296 1465 aa9.61□□□□□ -0.87
CDKL5-201ENST00000379989 BRD2P25440 801 aaKnown RBP9.61□□□□□ -0.87
CDKL5-201ENST00000379989 FAM13BQ9NYF5 915 aa9.61□□□□□ -0.87
CDKL5-201ENST00000379989 MROH1Q8NDA8 1641 aa9.6□□□□□ -0.87
CDKL5-201ENST00000379989 A2MP01023 1474 aa9.6□□□□□ -0.87
CDKL5-201ENST00000379989 PLA2R1Q13018 1463 aa9.6□□□□□ -0.87
CDKL5-201ENST00000379989 ZSCAN20P17040 1043 aaPredicted RBP9.59□□□□□ -0.87
CDKL5-201ENST00000379989 INSRP06213 1382 aa9.59□□□□□ -0.87
CDKL5-201ENST00000379989 PPP6R1Q9UPN7 881 aa9.59□□□□□ -0.87
CDKL5-201ENST00000379989 USP47Q96K76 1375 aa9.59□□□□□ -0.87
CDKL5-201ENST00000379989 ARHGAP31Q2M1Z3 1444 aa9.59□□□□□ -0.87
CDKL5-201ENST00000379989 KIF1BO60333 1816 aa9.58□□□□□ -0.88
CDKL5-201ENST00000379989 RRP1P56182 461 aaKnown RBP9.58□□□□□ -0.88
CDKL5-201ENST00000379989 CHRM1P11229 460 aaPredicted RBP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms