RNA–Protein interactions for RNA: ENST00000379826.4

SMAD9-202, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMAD9, Length 5,592 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-202ENST00000379826 MRC2Q9UBG0 1479 aa14.42□□□□□ -0.1
SMAD9-202ENST00000379826 ARHGAP5Q13017 1502 aa14.42□□□□□ -0.1
SMAD9-202ENST00000379826 SAMD9Q5K651 1589 aa14.41□□□□□ -0.1
SMAD9-202ENST00000379826 GOLGA6L22H0YM25 854 aa14.41□□□□□ -0.1
SMAD9-202ENST00000379826 WDR62O43379 1518 aa14.4□□□□□ -0.1
SMAD9-202ENST00000379826 CGNL1Q0VF96 1302 aa14.4□□□□□ -0.1
SMAD9-202ENST00000379826 POGKQ9P215 609 aa14.4□□□□□ -0.1
SMAD9-202ENST00000379826 KIAA0586Q9BVV6 1533 aa14.4□□□□□ -0.1
SMAD9-202ENST00000379826 PIP4K2BP78356 416 aa14.39□□□□□ -0.11
SMAD9-202ENST00000379826 PZPP20742 1482 aa14.39□□□□□ -0.11
SMAD9-202ENST00000379826 SF3B2Q13435 895 aaKnown RBP14.39□□□□□ -0.11
SMAD9-202ENST00000379826 RALGAPBQ86X10 1494 aa14.39□□□□□ -0.11
SMAD9-202ENST00000379826 NUP153P49790 1475 aaKnown RBP14.38□□□□□ -0.11
SMAD9-202ENST00000379826 RAPGEF6Q8TEU7 1601 aa14.38□□□□□ -0.11
SMAD9-202ENST00000379826 ZNF608Q9ULD9 1512 aaPredicted RBP14.38□□□□□ -0.11
SMAD9-202ENST00000379826 APBB1O00213 710 aa14.37□□□□□ -0.11
SMAD9-202ENST00000379826 GPATCH8Q9UKJ3 1502 aaKnown RBP14.37□□□□□ -0.11
SMAD9-202ENST00000379826 DNMT1P26358 1616 aaKnown RBP14.37□□□□□ -0.11
SMAD9-202ENST00000379826 IFT140Q96RY7 1462 aa14.37□□□□□ -0.11
SMAD9-202ENST00000379826 WASHC2CQ9Y4E1 1318 aa14.35□□□□□ -0.11
SMAD9-202ENST00000379826 SLFN5Q08AF3 891 aa14.35□□□□□ -0.11
SMAD9-202ENST00000379826 SPATA31E1Q6ZUB1 1445 aa14.34□□□□□ -0.11
SMAD9-202ENST00000379826 CFAP70Q5T0N1 1121 aa14.34□□□□□ -0.11
SMAD9-202ENST00000379826 KIF14Q15058 1648 aa14.34□□□□□ -0.11
SMAD9-202ENST00000379826 PNNQ9H307 717 aaKnown RBP14.34□□□□□ -0.11
SMAD9-202ENST00000379826 MAGI1Q96QZ7 1491 aaPredicted RBP14.33□□□□□ -0.11
SMAD9-202ENST00000379826 DUSP27Q5VZP5 1158 aa14.33□□□□□ -0.12
SMAD9-202ENST00000379826 ZKSCAN2Q63HK3 967 aa14.33□□□□□ -0.12
SMAD9-202ENST00000379826 SYNJ2O15056 1496 aa14.32□□□□□ -0.12
SMAD9-202ENST00000379826 RUNDC1Q96C34 613 aa14.32□□□□□ -0.12
SMAD9-202ENST00000379826 PDZRN3Q9UPQ7 1066 aa14.32□□□□□ -0.12
SMAD9-202ENST00000379826 RNF123Q5XPI4 1314 aa14.32□□□□□ -0.12
SMAD9-202ENST00000379826 RSPH6AQ9H0K4 717 aa14.32□□□□□ -0.12
SMAD9-202ENST00000379826 GRIN2AQ12879 1464 aa14.32□□□□□ -0.12
SMAD9-202ENST00000379826 ABCA5Q8WWZ7 1642 aa14.31□□□□□ -0.12
SMAD9-202ENST00000379826 PARD3Q8TEW0 1356 aa14.31□□□□□ -0.12
SMAD9-202ENST00000379826 KIF21AQ7Z4S6 1674 aa14.31□□□□□ -0.12
SMAD9-202ENST00000379826 KDM5BQ9UGL1 1544 aa14.31□□□□□ -0.12
SMAD9-202ENST00000379826 CASC1Q6TDU7 716 aa14.31□□□□□ -0.12
SMAD9-202ENST00000379826 KLHL34Q8N239 644 aa14.31□□□□□ -0.12
SMAD9-202ENST00000379826 IPO8O15397 1037 aaKnown RBP14.3□□□□□ -0.12
SMAD9-202ENST00000379826 KIAA0556O60303 1618 aa14.3□□□□□ -0.12
SMAD9-202ENST00000379826 TCP11L2Q8N4U5 519 aa14.3□□□□□ -0.12
SMAD9-202ENST00000379826 GBP4Q96PP9 640 aa14.3□□□□□ -0.12
SMAD9-202ENST00000379826 DENND4BO75064 1496 aaPredicted RBP14.3□□□□□ -0.12
SMAD9-202ENST00000379826 IGHDP01880 384 aa14.3□□□□□ -0.12
SMAD9-202ENST00000379826 TMEM132EQ6IEE7 984 aa14.3□□□□□ -0.12
SMAD9-202ENST00000379826 DZIP1LQ8IYY4 767 aaKnown RBP14.3□□□□□ -0.12
SMAD9-202ENST00000379826 AFAP1Q8N556 730 aa14.3□□□□□ -0.12
SMAD9-202ENST00000379826 ITSN2Q9NZM3 1697 aa14.29□□□□□ -0.12
SMAD9-202ENST00000379826 ELL2O00472 640 aaPredicted RBP14.29□□□□□ -0.12
SMAD9-202ENST00000379826 ADAMTS12P58397 1594 aa14.29□□□□□ -0.12
SMAD9-202ENST00000379826 LRPPRCP42704 1394 aaKnown RBP14.29□□□□□ -0.12
SMAD9-202ENST00000379826 CCDC141Q6ZP82 1450 aa14.29□□□□□ -0.12
SMAD9-202ENST00000379826 PRKCSHP14314 528 aaPredicted RBP14.28□□□□□ -0.12
SMAD9-202ENST00000379826 C22orf23Q9BZE7 217 aa14.28□□□□□ -0.12
SMAD9-202ENST00000379826 CSB-PGBD3P0DP91 1061 aa14.28□□□□□ -0.12
SMAD9-202ENST00000379826 PBRM1Q86U86 1689 aa14.28□□□□□ -0.12
SMAD9-202ENST00000379826 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.28□□□□□ -0.12
SMAD9-202ENST00000379826 PTMAP06454 111 aaKnown RBP14.27□□□□□ -0.12
SMAD9-202ENST00000379826 C8orf34Q49A92 452 aa14.27□□□□□ -0.12
SMAD9-202ENST00000379826 ANKRD45Q5TZF3 282 aa14.27□□□□□ -0.12
SMAD9-202ENST00000379826 TSR2Q969E8 191 aaKnown RBP14.27□□□□□ -0.12
SMAD9-202ENST00000379826 SOX12O15370 315 aa14.27□□□□□ -0.13
SMAD9-202ENST00000379826 MTHFSP49914 203 aa14.27□□□□□ -0.13
SMAD9-202ENST00000379826 PRAG1Q86YV5 1406 aa14.26□□□□□ -0.13
SMAD9-202ENST00000379826 PLEKHH2Q8IVE3 1493 aa14.26□□□□□ -0.13
SMAD9-202ENST00000379826 ARID3AQ99856 593 aa14.26□□□□□ -0.13
SMAD9-202ENST00000379826 LRRIQ1Q96JM4 1722 aa14.26□□□□□ -0.13
SMAD9-202ENST00000379826 MSNP26038 577 aaKnown RBP14.25□□□□□ -0.13
SMAD9-202ENST00000379826 KDM5CP41229 1560 aa14.25□□□□□ -0.13
SMAD9-202ENST00000379826 WWC1Q8IX03 1113 aa14.25□□□□□ -0.13
SMAD9-202ENST00000379826 PLEKHH1Q9ULM0 1364 aa14.25□□□□□ -0.13
SMAD9-202ENST00000379826 PDE3AQ14432 1141 aa14.25□□□□□ -0.13
SMAD9-202ENST00000379826 SLC12A5Q9H2X9 1139 aa14.25□□□□□ -0.13
SMAD9-202ENST00000379826 NKTRP30414 1462 aaKnown RBP14.25□□□□□ -0.13
SMAD9-202ENST00000379826 DDX11L8A8MPP1 907 aa14.25□□□□□ -0.13
SMAD9-202ENST00000379826 LNPKQ9C0E8 428 aa14.25□□□□□ -0.13
SMAD9-202ENST00000379826 FOXD4L5Q5VV16 416 aaPredicted RBP14.24□□□□□ -0.13
SMAD9-202ENST00000379826 FOXD4L4Q8WXT5 416 aaPredicted RBP14.24□□□□□ -0.13
SMAD9-202ENST00000379826 CABP2Q9NPB3 220 aa14.24□□□□□ -0.13
SMAD9-202ENST00000379826 HDGFL2Q7Z4V5 671 aaPredicted RBP14.24□□□□□ -0.13
SMAD9-202ENST00000379826 FAM135AQ9P2D6 1515 aa14.24□□□□□ -0.13
SMAD9-202ENST00000379826 CHMP5Q9NZZ3 219 aa14.23□□□□□ -0.13
SMAD9-202ENST00000379826 RIPK4P57078 832 aa14.23□□□□□ -0.13
SMAD9-202ENST00000379826 PER1O15534 1290 aaPredicted RBP14.23□□□□□ -0.13
SMAD9-202ENST00000379826 BCORL1Q5H9F3 1711 aa14.22□□□□□ -0.13
SMAD9-202ENST00000379826 DNTTIP2Q5QJE6 756 aaKnown RBP14.22□□□□□ -0.13
SMAD9-202ENST00000379826 CHMP4BQ9H444 224 aaKnown RBP14.22□□□□□ -0.13
SMAD9-202ENST00000379826 GGNBP2Q9H3C7 697 aa14.22□□□□□ -0.13
SMAD9-202ENST00000379826 DDX19BQ9UMR2 479 aa14.22□□□□□ -0.13
SMAD9-202ENST00000379826 DISP1Q96F81 1524 aa14.22□□□□□ -0.13
SMAD9-202ENST00000379826 FAM43AQ8N2R8 423 aa14.22□□□□□ -0.13
SMAD9-202ENST00000379826 DMRT2Q9Y5R5 561 aa14.22□□□□□ -0.13
SMAD9-202ENST00000379826 EXOSC9Q06265 439 aaKnown RBP14.21□□□□□ -0.13
SMAD9-202ENST00000379826 UHRF1BP1Q6BDS2 1440 aa14.21□□□□□ -0.13
SMAD9-202ENST00000379826 NOL8Q76FK4 1167 aaKnown RBP14.21□□□□□ -0.13
SMAD9-202ENST00000379826 TESK2Q96S53 571 aa14.21□□□□□ -0.13
SMAD9-202ENST00000379826 MINK1Q8N4C8 1332 aaPredicted RBP14.21□□□□□ -0.13
SMAD9-202ENST00000379826 DNAJC5Q9H3Z4 198 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms