RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 PDE3BQ13370 1112 aa12.17□□□□□ -0.46
COL4A6-202ENST00000372216 DIAPH1O60610 1272 aaKnown RBP12.16□□□□□ -0.46
COL4A6-202ENST00000372216 SNAPC4Q5SXM2 1469 aa12.16□□□□□ -0.46
COL4A6-202ENST00000372216 LRRC9Q6ZRR7 1453 aa12.16□□□□□ -0.46
COL4A6-202ENST00000372216 CEP89Q96ST8 783 aa12.16□□□□□ -0.46
COL4A6-202ENST00000372216 CFTRP13569 1480 aa12.16□□□□□ -0.46
COL4A6-202ENST00000372216 AFAP1Q8N556 730 aa12.15□□□□□ -0.46
COL4A6-202ENST00000372216 SLKQ9H2G2 1235 aaPredicted RBP12.15□□□□□ -0.46
COL4A6-202ENST00000372216 ANKRD50Q9ULJ7 1429 aa12.15□□□□□ -0.47
COL4A6-202ENST00000372216 BCL2L13Q9BXK5 485 aa12.14□□□□□ -0.47
COL4A6-202ENST00000372216 NUTM2GQ5VZR2 741 aa12.14□□□□□ -0.47
COL4A6-202ENST00000372216 DCAF8L1A6NGE4 600 aa12.14□□□□□ -0.47
COL4A6-202ENST00000372216 KDM4AO75164 1064 aa12.14□□□□□ -0.47
COL4A6-202ENST00000372216 DHX16O60231 1041 aaKnown RBP12.13□□□□□ -0.47
COL4A6-202ENST00000372216 SYNJ1O43426 1573 aa12.13□□□□□ -0.47
COL4A6-202ENST00000372216 CABP2Q9NPB3 220 aa12.13□□□□□ -0.47
COL4A6-202ENST00000372216 MTMR7Q9Y216 660 aa12.13□□□□□ -0.47
COL4A6-202ENST00000372216 FYB1O15117 783 aa12.13□□□□□ -0.47
COL4A6-202ENST00000372216 TOPBP1Q92547 1522 aa12.12□□□□□ -0.47
COL4A6-202ENST00000372216 TMEM132EQ6IEE7 984 aa12.12□□□□□ -0.47
COL4A6-202ENST00000372216 E9PSI1 815 aa12.12□□□□□ -0.47
COL4A6-202ENST00000372216 TCERG1O14776 1098 aaKnown RBP12.12□□□□□ -0.47
COL4A6-202ENST00000372216 HTATSF1O43719 755 aaKnown RBP12.12□□□□□ -0.47
COL4A6-202ENST00000372216 NEXNQ0ZGT2 675 aa12.12□□□□□ -0.47
COL4A6-202ENST00000372216 MIA2Q96PC5 1412 aa12.11□□□□□ -0.47
COL4A6-202ENST00000372216 SLC4A3P48751 1232 aa12.11□□□□□ -0.47
COL4A6-202ENST00000372216 FOSBP53539 338 aa12.11□□□□□ -0.47
COL4A6-202ENST00000372216 RIPK4P57078 832 aa12.11□□□□□ -0.47
COL4A6-202ENST00000372216 TPD52L1Q16890 204 aaPredicted RBP12.1□□□□□ -0.47
COL4A6-202ENST00000372216 GBP4Q96PP9 640 aa12.1□□□□□ -0.47
COL4A6-202ENST00000372216 TPM4P67936 248 aa12.1□□□□□ -0.47
COL4A6-202ENST00000372216 TXNDC2Q86VQ3 553 aa12.1□□□□□ -0.47
COL4A6-202ENST00000372216 RILPL2Q969X0 211 aa12.1□□□□□ -0.47
COL4A6-202ENST00000372216 ZKSCAN2Q63HK3 967 aa12.1□□□□□ -0.47
COL4A6-202ENST00000372216 C9orf78Q9NZ63 289 aaPredicted RBP12.1□□□□□ -0.47
COL4A6-202ENST00000372216 HMGXB3Q12766 1538 aa12.1□□□□□ -0.47
COL4A6-202ENST00000372216 RAPGEF4Q8WZA2 1011 aa12.09□□□□□ -0.47
COL4A6-202ENST00000372216 ERICH3Q5RHP9 1530 aa12.09□□□□□ -0.47
COL4A6-202ENST00000372216 APAF1O14727 1248 aa12.09□□□□□ -0.47
COL4A6-202ENST00000372216 VPS37DQ86XT2 251 aa12.09□□□□□ -0.47
COL4A6-202ENST00000372216 NLRP2Q9NX02 1062 aa12.08□□□□□ -0.47
COL4A6-202ENST00000372216 RRBP1Q9P2E9 1410 aaKnown RBP12.08□□□□□ -0.47
COL4A6-202ENST00000372216 FAM177BA6PVY3 158 aa12.08□□□□□ -0.48
COL4A6-202ENST00000372216 ESCO1Q5FWF5 840 aa12.08□□□□□ -0.48
COL4A6-202ENST00000372216 HMOX1P09601 288 aa12.08□□□□□ -0.48
COL4A6-202ENST00000372216 ANKRD45Q5TZF3 282 aa12.08□□□□□ -0.48
COL4A6-202ENST00000372216 ZNF428Q96B54 188 aa12.08□□□□□ -0.48
COL4A6-202ENST00000372216 PRKRIP1Q9H875 184 aaPredicted RBP12.08□□□□□ -0.48
COL4A6-202ENST00000372216 NOL10Q9BSC4 688 aaKnown RBP12.08□□□□□ -0.48
COL4A6-202ENST00000372216 PLIN1O60240 522 aa12.08□□□□□ -0.48
COL4A6-202ENST00000372216 GGNBP2Q9H3C7 697 aa12.08□□□□□ -0.48
COL4A6-202ENST00000372216 HECW1Q76N89 1606 aa12.07□□□□□ -0.48
COL4A6-202ENST00000372216 PROSER2Q86WR7 435 aaPredicted RBP12.07□□□□□ -0.48
COL4A6-202ENST00000372216 POLA1P09884 1462 aaPredicted RBP12.07□□□□□ -0.48
COL4A6-202ENST00000372216 PTMSP20962 102 aa12.07□□□□□ -0.48
COL4A6-202ENST00000372216 STAC3Q96MF2 364 aa12.07□□□□□ -0.48
COL4A6-202ENST00000372216 GPRASP1Q5JY77 1395 aa12.07□□□□□ -0.48
COL4A6-202ENST00000372216 EFCAB5A4FU69 1503 aa12.07□□□□□ -0.48
COL4A6-202ENST00000372216 DDX58O95786 925 aaKnown RBP12.07□□□□□ -0.48
COL4A6-202ENST00000372216 EHBP1L1Q8N3D4 1523 aa12.07□□□□□ -0.48
COL4A6-202ENST00000372216 TSPYL4Q9UJ04 414 aa12.06□□□□□ -0.48
COL4A6-202ENST00000372216 APPP05067 770 aa12.06□□□□□ -0.48
COL4A6-202ENST00000372216 SF3A1Q15459 793 aaKnown RBP12.06□□□□□ -0.48
COL4A6-202ENST00000372216 DNMBPQ6XZF7 1577 aa12.06□□□□□ -0.48
COL4A6-202ENST00000372216 NLRP6P59044 892 aa12.06□□□□□ -0.48
COL4A6-202ENST00000372216 TOP2BQ02880 1626 aa12.06□□□□□ -0.48
COL4A6-202ENST00000372216 IBSPP21815 317 aaPredicted RBP12.06□□□□□ -0.48
COL4A6-202ENST00000372216 PCMTD1Q96MG8 357 aaPredicted RBP12.05□□□□□ -0.48
COL4A6-202ENST00000372216 USP35Q9P2H5 1018 aa12.05□□□□□ -0.48
COL4A6-202ENST00000372216 PLEKHH2Q8IVE3 1493 aa12.05□□□□□ -0.48
COL4A6-202ENST00000372216 CCAR2Q8N163 923 aaKnown RBP12.05□□□□□ -0.48
COL4A6-202ENST00000372216 RUNDC1Q96C34 613 aa12.05□□□□□ -0.48
COL4A6-202ENST00000372216 BCL11BQ9C0K0 894 aaPredicted RBP12.05□□□□□ -0.48
COL4A6-202ENST00000372216 SCAPERQ9BY12 1400 aa12.05□□□□□ -0.48
COL4A6-202ENST00000372216 KIF16BQ96L93 1317 aa12.05□□□□□ -0.48
COL4A6-202ENST00000372216 H3BQV1 296 aa12.05□□□□□ -0.48
COL4A6-202ENST00000372216 IFFO2Q5TF58 517 aa12.05□□□□□ -0.48
COL4A6-202ENST00000372216 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.05□□□□□ -0.48
COL4A6-202ENST00000372216 RBM19Q9Y4C8 960 aaKnown RBP12.05□□□□□ -0.48
COL4A6-202ENST00000372216 MCTP1Q6DN14 999 aa12.04□□□□□ -0.48
COL4A6-202ENST00000372216 ABTB2Q8N961 1025 aa12.04□□□□□ -0.48
COL4A6-202ENST00000372216 C9orf84Q5VXU9 1444 aa12.04□□□□□ -0.48
COL4A6-202ENST00000372216 AKAP17AQ02040 695 aaKnown RBP12.04□□□□□ -0.48
COL4A6-202ENST00000372216 AMOTL1Q8IY63 956 aa12.04□□□□□ -0.48
COL4A6-202ENST00000372216 FKBP5Q13451 457 aaPredicted RBP12.03□□□□□ -0.48
COL4A6-202ENST00000372216 ST18O60284 1047 aa12.03□□□□□ -0.48
COL4A6-202ENST00000372216 CFAP70Q5T0N1 1121 aa12.03□□□□□ -0.48
COL4A6-202ENST00000372216 COG6Q9Y2V7 657 aa12.03□□□□□ -0.48
COL4A6-202ENST00000372216 THEMISQ8N1K5 641 aaPredicted RBP12.03□□□□□ -0.48
COL4A6-202ENST00000372216 SYAP1Q96A49 352 aaPredicted RBP12.03□□□□□ -0.48
COL4A6-202ENST00000372216 CRBNQ96SW2 442 aa12.03□□□□□ -0.48
COL4A6-202ENST00000372216 PRAM1Q96QH2 718 aa12.02□□□□□ -0.48
COL4A6-202ENST00000372216 ARAP1Q96P48 1450 aa12.02□□□□□ -0.48
COL4A6-202ENST00000372216 CCDC34Q96HJ3 373 aa12.02□□□□□ -0.48
COL4A6-202ENST00000372216 CSPP1Q1MSJ5 1256 aa12.02□□□□□ -0.49
COL4A6-202ENST00000372216 NUTM2BA6NNL0 878 aaPredicted RBP12.02□□□□□ -0.49
COL4A6-202ENST00000372216 NUTM2EB1AL46 878 aaPredicted RBP12.02□□□□□ -0.49
COL4A6-202ENST00000372216 RRP1P56182 461 aaKnown RBP12.02□□□□□ -0.49
COL4A6-202ENST00000372216 NUTM2AQ8IVF1 878 aaPredicted RBP12.02□□□□□ -0.49
COL4A6-202ENST00000372216 IFIT2P09913 472 aaKnown RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms