RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 MFAP1P55081 439 aaKnown RBP10.93□□□□□ -0.66
SYNE1-209ENST00000367257 GORABQ5T7V8 394 aa10.93□□□□□ -0.66
SYNE1-209ENST00000367257 CPLX2Q6PUV4 134 aaKnown RBP10.93□□□□□ -0.66
SYNE1-209ENST00000367257 SNAPC4Q5SXM2 1469 aa10.92□□□□□ -0.66
SYNE1-209ENST00000367257 HSP90B1P14625 803 aaKnown RBP10.92□□□□□ -0.66
SYNE1-209ENST00000367257 TPRNQ4KMQ1 711 aa10.92□□□□□ -0.66
SYNE1-209ENST00000367257 SPRYD3Q8NCJ5 442 aa10.92□□□□□ -0.66
SYNE1-209ENST00000367257 KIAA0556O60303 1618 aa10.92□□□□□ -0.66
SYNE1-209ENST00000367257 AQRO60306 1485 aaKnown RBP eCLIP10.92□□□□□ -0.66
SYNE1-209ENST00000367257 ARAP1Q96P48 1450 aa10.92□□□□□ -0.66
SYNE1-209ENST00000367257 GOLGA6L19H0YKK7 550 aa10.92□□□□□ -0.66
SYNE1-209ENST00000367257 TEX35Q5T0J7 233 aa10.92□□□□□ -0.66
SYNE1-209ENST00000367257 ZKSCAN2Q63HK3 967 aa10.91□□□□□ -0.66
SYNE1-209ENST00000367257 LMOD2Q6P5Q4 547 aa10.91□□□□□ -0.66
SYNE1-209ENST00000367257 CCDC47Q96A33 483 aaKnown RBP10.91□□□□□ -0.66
SYNE1-209ENST00000367257 ACBD3Q9H3P7 528 aa10.91□□□□□ -0.66
SYNE1-209ENST00000367257 CCDC144AA2RUR9 1427 aa10.91□□□□□ -0.66
SYNE1-209ENST00000367257 CDR1P51861 262 aa10.91□□□□□ -0.66
SYNE1-209ENST00000367257 ANKRD20A12PQ8NF67 263 aa10.91□□□□□ -0.66
SYNE1-209ENST00000367257 MIA2Q96PC5 1412 aa10.9□□□□□ -0.66
SYNE1-209ENST00000367257 NUCB2P80303 420 aa10.9□□□□□ -0.66
SYNE1-209ENST00000367257 DDX19BQ9UMR2 479 aa10.9□□□□□ -0.66
SYNE1-209ENST00000367257 SF3A1Q15459 793 aaKnown RBP10.9□□□□□ -0.66
SYNE1-209ENST00000367257 CHMP5Q9NZZ3 219 aa10.9□□□□□ -0.66
SYNE1-209ENST00000367257 ISY1Q9ULR0 285 aaKnown RBP10.9□□□□□ -0.66
SYNE1-209ENST00000367257 API5Q9BZZ5 524 aaKnown RBP10.9□□□□□ -0.67
SYNE1-209ENST00000367257 PDCL3Q9H2J4 239 aa10.9□□□□□ -0.67
SYNE1-209ENST00000367257 TRIM6-TRIM34B2RNG4 842 aa10.89□□□□□ -0.67
SYNE1-209ENST00000367257 NFKBIBQ15653 356 aa10.89□□□□□ -0.67
SYNE1-209ENST00000367257 IQGAP2Q13576 1575 aa10.89□□□□□ -0.67
SYNE1-209ENST00000367257 RRP1P56182 461 aaKnown RBP10.89□□□□□ -0.67
SYNE1-209ENST00000367257 HSP90AB4PQ58FF6 505 aa10.88□□□□□ -0.67
SYNE1-209ENST00000367257 EFCAB5A4FU69 1503 aa10.88□□□□□ -0.67
SYNE1-209ENST00000367257 R3HCC1Q9Y3T6 440 aaKnown RBP10.88□□□□□ -0.67
SYNE1-209ENST00000367257 PDE4AP27815 886 aa10.88□□□□□ -0.67
SYNE1-209ENST00000367257 ARHGEF11O15085 1522 aa10.88□□□□□ -0.67
SYNE1-209ENST00000367257 ERCC6L2Q5T890 1561 aa10.88□□□□□ -0.67
SYNE1-209ENST00000367257 ADCY10Q96PN6 1610 aa10.88□□□□□ -0.67
SYNE1-209ENST00000367257 CLSTN1O94985 981 aa10.87□□□□□ -0.67
SYNE1-209ENST00000367257 IPO7O95373 1038 aaKnown RBP10.87□□□□□ -0.67
SYNE1-209ENST00000367257 EID1Q9Y6B2 187 aa10.87□□□□□ -0.67
SYNE1-209ENST00000367257 LETM1O95202 739 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-209ENST00000367257 SCAPERQ9BY12 1400 aa10.87□□□□□ -0.67
SYNE1-209ENST00000367257 BECN2A8MW95 431 aa10.87□□□□□ -0.67
SYNE1-209ENST00000367257 ARGLU1Q9NWB6 273 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-209ENST00000367257 DDX49Q9Y6V7 483 aaKnown RBP10.87□□□□□ -0.67
SYNE1-209ENST00000367257 RNF20Q5VTR2 975 aa10.87□□□□□ -0.67
SYNE1-209ENST00000367257 H3BQV1 296 aa10.86□□□□□ -0.67
SYNE1-209ENST00000367257 IFFO2Q5TF58 517 aa10.86□□□□□ -0.67
SYNE1-209ENST00000367257 RASSF8Q8NHQ8 419 aa10.86□□□□□ -0.67
SYNE1-209ENST00000367257 L3MBTL2Q969R5 705 aa10.86□□□□□ -0.67
SYNE1-209ENST00000367257 TSPYL1Q9H0U9 437 aa10.86□□□□□ -0.67
SYNE1-209ENST00000367257 DHX57Q6P158 1386 aaKnown RBP10.86□□□□□ -0.67
SYNE1-209ENST00000367257 NINLQ9Y2I6 1382 aa10.86□□□□□ -0.67
SYNE1-209ENST00000367257 ZKSCAN1P17029 563 aaPredicted RBP10.86□□□□□ -0.67
SYNE1-209ENST00000367257 EVC2Q86UK5 1308 aa10.86□□□□□ -0.67
SYNE1-209ENST00000367257 SYNE3Q6ZMZ3 975 aa10.86□□□□□ -0.67
SYNE1-209ENST00000367257 ABCA8O94911 1581 aa10.86□□□□□ -0.67
SYNE1-209ENST00000367257 FAM184AQ8NB25 1140 aa10.86□□□□□ -0.67
SYNE1-209ENST00000367257 CWC15Q9P013 229 aaKnown RBP10.86□□□□□ -0.67
SYNE1-209ENST00000367257 MRE11P49959 708 aa10.85□□□□□ -0.67
SYNE1-209ENST00000367257 CNTLNQ9NXG0 1405 aa10.85□□□□□ -0.67
SYNE1-209ENST00000367257 PAXIP1Q6ZW49 1069 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-209ENST00000367257 AKAP17AQ02040 695 aaKnown RBP10.85□□□□□ -0.67
SYNE1-209ENST00000367257 TPD52L1Q16890 204 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-209ENST00000367257 AEBP1Q8IUX7 1158 aa10.85□□□□□ -0.67
SYNE1-209ENST00000367257 CCP110O43303 1012 aa10.84□□□□□ -0.67
SYNE1-209ENST00000367257 IRX3P78415 501 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-209ENST00000367257 DIAPH3Q9NSV4 1193 aa10.84□□□□□ -0.67
SYNE1-209ENST00000367257 MAP3K1Q13233 1512 aa10.84□□□□□ -0.67
SYNE1-209ENST00000367257 VGFO15240 615 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-209ENST00000367257 PRKRIP1Q9H875 184 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-209ENST00000367257 TULP1O00294 542 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-209ENST00000367257 BCL11BQ9C0K0 894 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-209ENST00000367257 KIF7Q2M1P5 1343 aa10.83□□□□□ -0.68
SYNE1-209ENST00000367257 WASHC2AQ641Q2 1341 aa10.83□□□□□ -0.68
SYNE1-209ENST00000367257 WASHC2CQ9Y4E1 1318 aa10.83□□□□□ -0.68
SYNE1-209ENST00000367257 KANK4Q5T7N3 995 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-209ENST00000367257 AMOTL1Q8IY63 956 aa10.83□□□□□ -0.68
SYNE1-209ENST00000367257 CSB-PGBD3P0DP91 1061 aa10.82□□□□□ -0.68
SYNE1-209ENST00000367257 MCM2P49736 904 aa10.82□□□□□ -0.68
SYNE1-209ENST00000367257 TRIM29Q14134 588 aa10.82□□□□□ -0.68
SYNE1-209ENST00000367257 MYOM3Q5VTT5 1437 aa10.82□□□□□ -0.68
SYNE1-209ENST00000367257 ERCC4Q92889 916 aaPredicted RBP10.82□□□□□ -0.68
SYNE1-209ENST00000367257 KDM5BQ9UGL1 1544 aa10.82□□□□□ -0.68
SYNE1-209ENST00000367257 MAPK8IP2Q13387 824 aaPredicted RBP10.82□□□□□ -0.68
SYNE1-209ENST00000367257 INTS3Q68E01 1043 aaKnown RBP10.82□□□□□ -0.68
SYNE1-209ENST00000367257 AK7Q96M32 723 aa10.81□□□□□ -0.68
SYNE1-209ENST00000367257 KIAA0586Q9BVV6 1533 aa10.81□□□□□ -0.68
SYNE1-209ENST00000367257 NEXNQ0ZGT2 675 aa10.81□□□□□ -0.68
SYNE1-209ENST00000367257 CCDC39Q9UFE4 941 aa10.81□□□□□ -0.68
SYNE1-209ENST00000367257 USP47Q96K76 1375 aa10.81□□□□□ -0.68
SYNE1-209ENST00000367257 SLC4A3P48751 1232 aa10.81□□□□□ -0.68
SYNE1-209ENST00000367257 GGT6Q6P531 493 aa10.81□□□□□ -0.68
SYNE1-209ENST00000367257 MSH5O43196 834 aa10.8□□□□□ -0.68
SYNE1-209ENST00000367257 NAT10Q9H0A0 1025 aaKnown RBP10.8□□□□□ -0.68
SYNE1-209ENST00000367257 BRD4O60885 1362 aaPredicted RBP10.8□□□□□ -0.68
SYNE1-209ENST00000367257 DDX58O95786 925 aaKnown RBP10.8□□□□□ -0.68
SYNE1-209ENST00000367257 PAK3O75914 559 aaPredicted RBP10.8□□□□□ -0.68
SYNE1-209ENST00000367257 MBD3O95983 291 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms