RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 NAP1L1P55209 391 aaKnown RBP8.89□□□□□ -0.99
SYNE1-208ENST00000367256 CNKSR2Q8WXI2 1034 aa8.89□□□□□ -0.99
SYNE1-208ENST00000367256 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.89□□□□□ -0.99
SYNE1-208ENST00000367256 CWC15Q9P013 229 aaKnown RBP8.89□□□□□ -0.99
SYNE1-208ENST00000367256 HSP90B2PQ58FF3 399 aa8.89□□□□□ -0.99
SYNE1-208ENST00000367256 NOL10Q9BSC4 688 aaKnown RBP8.89□□□□□ -0.99
SYNE1-208ENST00000367256 NUCB2P80303 420 aa8.89□□□□□ -0.99
SYNE1-208ENST00000367256 DCTN1Q14203 1278 aa8.89□□□□□ -0.99
SYNE1-208ENST00000367256 CCDC47Q96A33 483 aaKnown RBP8.89□□□□□ -0.99
SYNE1-208ENST00000367256 GTF2E1P29083 439 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-208ENST00000367256 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.89□□□□□ -0.99
SYNE1-208ENST00000367256 RAD21O60216 631 aa8.88□□□□□ -0.99
SYNE1-208ENST00000367256 IFT57Q9NWB7 429 aa8.88□□□□□ -0.99
SYNE1-208ENST00000367256 CT47A1Q5JQC4 288 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-208ENST00000367256 PRKCSHP14314 528 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-208ENST00000367256 HMGN5P82970 282 aaKnown RBP8.88□□□□□ -0.99
SYNE1-208ENST00000367256 DHX8Q14562 1220 aaKnown RBP8.88□□□□□ -0.99
SYNE1-208ENST00000367256 CCDC66A2RUB6 948 aa8.88□□□□□ -0.99
SYNE1-208ENST00000367256 CCDC191Q8NCU4 936 aa8.88□□□□□ -0.99
SYNE1-208ENST00000367256 BICD2Q8TD16 824 aa8.88□□□□□ -0.99
SYNE1-208ENST00000367256 CTDP1Q9Y5B0 961 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-208ENST00000367256 MRE11P49959 708 aa8.87□□□□□ -0.99
SYNE1-208ENST00000367256 CAGE1Q8TC20 777 aa8.87□□□□□ -0.99
SYNE1-208ENST00000367256 CPLX1O14810 134 aa8.87□□□□□ -0.99
SYNE1-208ENST00000367256 RUFY2Q8WXA3 655 aa8.87□□□□□ -0.99
SYNE1-208ENST00000367256 FBXW7Q969H0 707 aa8.87□□□□□ -0.99
SYNE1-208ENST00000367256 CCDC43Q96MW1 224 aaKnown RBP8.87□□□□□ -0.99
SYNE1-208ENST00000367256 MNS1Q8NEH6 495 aa8.87□□□□□ -0.99
SYNE1-208ENST00000367256 ANKRD45Q5TZF3 282 aa8.87□□□□□ -0.99
SYNE1-208ENST00000367256 CCDC39Q9UFE4 941 aa8.87□□□□□ -0.99
SYNE1-208ENST00000367256 CUX1P39880 1505 aa8.87□□□□□ -0.99
SYNE1-208ENST00000367256 AMPHP49418 695 aa8.87□□□□□ -0.99
SYNE1-208ENST00000367256 ZKSCAN1P17029 563 aaPredicted RBP8.86□□□□□ -0.99
SYNE1-208ENST00000367256 ZKSCAN2Q63HK3 967 aa8.86□□□□□ -0.99
SYNE1-208ENST00000367256 EPS15P42566 896 aa8.86□□□□□ -0.99
SYNE1-208ENST00000367256 NAT10Q9H0A0 1025 aaKnown RBP8.86□□□□□ -0.99
SYNE1-208ENST00000367256 RDXP35241 583 aaKnown RBP8.86□□□□□ -0.99
SYNE1-208ENST00000367256 DHX57Q6P158 1386 aaKnown RBP8.86□□□□□ -0.99
SYNE1-208ENST00000367256 H0YHG0 523 aa8.86□□□□□ -0.99
SYNE1-208ENST00000367256 ODF2Q5BJF6 829 aa8.86□□□□□ -0.99
SYNE1-208ENST00000367256 MYO6Q9UM54 1294 aa8.86□□□□□ -0.99
SYNE1-208ENST00000367256 RRP7AQ9Y3A4 280 aaKnown RBP8.85□□□□□ -0.99
SYNE1-208ENST00000367256 DDX19BQ9UMR2 479 aa8.85□□□□□ -0.99
SYNE1-208ENST00000367256 GGT6Q6P531 493 aa8.85□□□□□ -0.99
SYNE1-208ENST00000367256 CCDC88BA6NC98 1476 aa8.85□□□□□ -0.99
SYNE1-208ENST00000367256 DHX16O60231 1041 aaKnown RBP8.85□□□□□ -0.99
SYNE1-208ENST00000367256 NFXL1Q6ZNB6 911 aa8.85□□□□□ -0.99
SYNE1-208ENST00000367256 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-208ENST00000367256 PODXL2Q9NZ53 605 aa8.84□□□□□ -0.99
SYNE1-208ENST00000367256 SLC4A3P48751 1232 aa8.84□□□□□ -0.99
SYNE1-208ENST00000367256 CPLX2Q6PUV4 134 aaKnown RBP8.84□□□□□ -0.99
SYNE1-208ENST00000367256 HSP90AB2PQ58FF8 381 aa8.84□□□□□ -0.99
SYNE1-208ENST00000367256 LTV1Q96GA3 475 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-208ENST00000367256 CCP110O43303 1012 aa8.84□□□□□ -0.99
SYNE1-208ENST00000367256 APPP05067 770 aa8.84□□□□□ -0.99
SYNE1-208ENST00000367256 SASS6Q6UVJ0 657 aa8.84□□□□□ -0.99
SYNE1-208ENST00000367256 PRKRIP1Q9H875 184 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-208ENST00000367256 LETM1O95202 739 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-208ENST00000367256 VPS37DQ86XT2 251 aa8.84□□□□□ -0.99
SYNE1-208ENST00000367256 NGDNQ8NEJ9 315 aaKnown RBP8.84□□□□□ -0.99
SYNE1-208ENST00000367256 CCDC144AA2RUR9 1427 aa8.83□□□□□ -1
SYNE1-208ENST00000367256 C1orf141Q5JVX7 400 aa8.83□□□□□ -1
SYNE1-208ENST00000367256 RNF20Q5VTR2 975 aa8.83□□□□□ -1
SYNE1-208ENST00000367256 RAPGEF2Q9Y4G8 1499 aa8.83□□□□□ -1
SYNE1-208ENST00000367256 CCDC73Q6ZRK6 1079 aa8.83□□□□□ -1
SYNE1-208ENST00000367256 VPS37CA5D8V6 355 aaPredicted RBP8.83□□□□□ -1
SYNE1-208ENST00000367256 USP47Q96K76 1375 aa8.83□□□□□ -1
SYNE1-208ENST00000367256 TRHP20396 242 aaPredicted RBP8.83□□□□□ -1
SYNE1-208ENST00000367256 FOSBP53539 338 aa8.83□□□□□ -1
SYNE1-208ENST00000367256 CCDC173Q0VFZ6 552 aa8.83□□□□□ -1
SYNE1-208ENST00000367256 MBD3O95983 291 aa8.83□□□□□ -1
SYNE1-208ENST00000367256 NEXNQ0ZGT2 675 aa8.83□□□□□ -1
SYNE1-208ENST00000367256 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.83□□□□□ -1
SYNE1-208ENST00000367256 C9orf78Q9NZ63 289 aaPredicted RBP8.83□□□□□ -1
SYNE1-208ENST00000367256 TAF3Q5VWG9 929 aa8.83□□□□□ -1
SYNE1-208ENST00000367256 IFIT2P09913 472 aaKnown RBP8.82□□□□□ -1
SYNE1-208ENST00000367256 L3MBTL2Q969R5 705 aa8.82□□□□□ -1
SYNE1-208ENST00000367256 NASPP49321 788 aaPredicted RBP8.82□□□□□ -1
SYNE1-208ENST00000367256 NINLQ9Y2I6 1382 aa8.82□□□□□ -1
SYNE1-208ENST00000367256 OLFM4Q6UX06 510 aa8.82□□□□□ -1
SYNE1-208ENST00000367256 TTC5Q8N0Z6 440 aa8.82□□□□□ -1
SYNE1-208ENST00000367256 ERICH2A1L162 156 aa8.82□□□□□ -1
SYNE1-208ENST00000367256 EID1Q9Y6B2 187 aa8.82□□□□□ -1
SYNE1-208ENST00000367256 TRDNQ13061 729 aa8.81□□□□□ -1
SYNE1-208ENST00000367256 ERCC4Q92889 916 aaPredicted RBP8.81□□□□□ -1
SYNE1-208ENST00000367256 KIF7Q2M1P5 1343 aa8.81□□□□□ -1
SYNE1-208ENST00000367256 PDILTQ8N807 584 aa8.81□□□□□ -1
SYNE1-208ENST00000367256 BRMS1Q9HCU9 246 aa8.81□□□□□ -1
SYNE1-208ENST00000367256 SAFBQ15424 915 aaKnown RBP eCLIP8.81□□□□□ -1
SYNE1-208ENST00000367256 KANK4Q5T7N3 995 aaPredicted RBP8.81□□□□□ -1
SYNE1-208ENST00000367256 CNTLNQ9NXG0 1405 aa8.81□□□□□ -1
SYNE1-208ENST00000367256 PLIN1O60240 522 aa8.81□□□□□ -1
SYNE1-208ENST00000367256 BCL2L13Q9BXK5 485 aa8.81□□□□□ -1
SYNE1-208ENST00000367256 CAVIN1Q6NZI2 390 aaKnown RBP8.8□□□□□ -1
SYNE1-208ENST00000367256 BCL11BQ9C0K0 894 aaPredicted RBP8.8□□□□□ -1
SYNE1-208ENST00000367256 STAC3Q96MF2 364 aa8.8□□□□□ -1
SYNE1-208ENST00000367256 MIA2Q96PC5 1412 aa8.8□□□□□ -1
SYNE1-208ENST00000367256 SMC3Q9UQE7 1217 aa8.8□□□□□ -1
SYNE1-208ENST00000367256 NUTM2DQ5VT03 806 aaPredicted RBP8.8□□□□□ -1
SYNE1-208ENST00000367256 RRP9O43818 475 aaKnown RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms