RNA–Protein interactions for RNA: ENST00000346562.6

NPAS3-201, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NPAS3, Length 5,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-201ENST00000346562 SKOR2Q2VWA4 1001 aaPredicted RBP28.29■■■□□ 2.12
NPAS3-201ENST00000346562 FBXW7Q969H0 707 aa28.29■■■□□ 2.12
NPAS3-201ENST00000346562 MROH2BQ7Z745 1585 aa28.28■■■□□ 2.12
NPAS3-201ENST00000346562 MINK1Q8N4C8 1332 aaPredicted RBP28.27■■■□□ 2.12
NPAS3-201ENST00000346562 ST20-MTHFSA0A0A6YYL1 179 aa28.27■■■□□ 2.12
NPAS3-201ENST00000346562 DHX16O60231 1041 aaKnown RBP28.27■■■□□ 2.12
NPAS3-201ENST00000346562 PSME1Q06323 249 aa28.27■■■□□ 2.12
NPAS3-201ENST00000346562 APPP05067 770 aa28.27■■■□□ 2.12
NPAS3-201ENST00000346562 ANKRD20A12PQ8NF67 263 aa28.27■■■□□ 2.12
NPAS3-201ENST00000346562 CWC22Q9HCG8 908 aaKnown RBP28.27■■■□□ 2.12
NPAS3-201ENST00000346562 ANO2Q9NQ90 1003 aa28.26■■■□□ 2.11
NPAS3-201ENST00000346562 KRI1Q8N9T8 703 aaKnown RBP28.26■■■□□ 2.11
NPAS3-201ENST00000346562 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.25■■■□□ 2.11
NPAS3-201ENST00000346562 SYTL4Q96C24 671 aaPredicted RBP28.25■■■□□ 2.11
NPAS3-201ENST00000346562 PCMTD1Q96MG8 357 aaPredicted RBP28.25■■■□□ 2.11
NPAS3-201ENST00000346562 HOOK1Q9UJC3 728 aaKnown RBP28.25■■■□□ 2.11
NPAS3-201ENST00000346562 DIAPH1O60610 1272 aaKnown RBP28.25■■■□□ 2.11
NPAS3-201ENST00000346562 REC8O95072 547 aa28.25■■■□□ 2.11
NPAS3-201ENST00000346562 CADPSQ9ULU8 1353 aa28.25■■■□□ 2.11
NPAS3-201ENST00000346562 TRDNQ13061 729 aa28.24■■■□□ 2.11
NPAS3-201ENST00000346562 CPLX1O14810 134 aa28.24■■■□□ 2.11
NPAS3-201ENST00000346562 FAM161AQ3B820 660 aa28.24■■■□□ 2.11
NPAS3-201ENST00000346562 ERICH2A1L162 156 aa28.23■■■□□ 2.11
NPAS3-201ENST00000346562 ANO8Q9HCE9 1232 aaPredicted RBP28.23■■■□□ 2.11
NPAS3-201ENST00000346562 API5Q9BZZ5 524 aaKnown RBP28.23■■■□□ 2.11
NPAS3-201ENST00000346562 BCL2L13Q9BXK5 485 aa28.23■■■□□ 2.11
NPAS3-201ENST00000346562 RNF20Q5VTR2 975 aa28.23■■■□□ 2.11
NPAS3-201ENST00000346562 TOP2AP11388 1531 aaKnown RBP28.22■■■□□ 2.11
NPAS3-201ENST00000346562 SETQ01105 290 aaPredicted RBP28.22■■■□□ 2.11
NPAS3-201ENST00000346562 DDX19BQ9UMR2 479 aa28.22■■■□□ 2.11
NPAS3-201ENST00000346562 DDX49Q9Y6V7 483 aaKnown RBP28.22■■■□□ 2.11
NPAS3-201ENST00000346562 IPO7O95373 1038 aaKnown RBP28.21■■■□□ 2.11
NPAS3-201ENST00000346562 G3BP1Q13283 466 aaKnown RBP eCLIP28.21■■■□□ 2.11
NPAS3-201ENST00000346562 PTPRGP23470 1445 aa28.21■■■□□ 2.11
NPAS3-201ENST00000346562 CCDC43Q96MW1 224 aaKnown RBP28.2■■■□□ 2.11
NPAS3-201ENST00000346562 GPS2Q13227 327 aa28.2■■■□□ 2.1
NPAS3-201ENST00000346562 WWC1Q8IX03 1113 aa28.2■■■□□ 2.1
NPAS3-201ENST00000346562 CCAR2Q8N163 923 aaKnown RBP28.2■■■□□ 2.1
NPAS3-201ENST00000346562 NFXL1Q6ZNB6 911 aa28.19■■■□□ 2.1
NPAS3-201ENST00000346562 RBM33Q96EV2 1170 aaKnown RBP28.18■■■□□ 2.1
NPAS3-201ENST00000346562 CNKSR2Q8WXI2 1034 aa28.17■■■□□ 2.1
NPAS3-201ENST00000346562 HSP90AB4PQ58FF6 505 aa28.15■■■□□ 2.1
NPAS3-201ENST00000346562 AEBP2Q6ZN18 517 aaPredicted RBP28.15■■■□□ 2.1
NPAS3-201ENST00000346562 USP47Q96K76 1375 aa28.14■■■□□ 2.09
NPAS3-201ENST00000346562 RRP1P56182 461 aaKnown RBP28.13■■■□□ 2.09
NPAS3-201ENST00000346562 RIPK4P57078 832 aa28.12■■■□□ 2.09
NPAS3-201ENST00000346562 FOXD4L6Q3SYB3 417 aaPredicted RBP28.12■■■□□ 2.09
NPAS3-201ENST00000346562 FOXD4L3Q6VB84 417 aaPredicted RBP28.12■■■□□ 2.09
NPAS3-201ENST00000346562 FKBP5Q13451 457 aaPredicted RBP28.12■■■□□ 2.09
NPAS3-201ENST00000346562 NECTIN2Q92692 538 aa28.12■■■□□ 2.09
NPAS3-201ENST00000346562 ATF3P18847 181 aa28.11■■■□□ 2.09
NPAS3-201ENST00000346562 RAPGEF4Q8WZA2 1011 aa28.11■■■□□ 2.09
NPAS3-201ENST00000346562 COG6Q9Y2V7 657 aa28.1■■■□□ 2.09
NPAS3-201ENST00000346562 ERC2O15083 957 aa28.1■■■□□ 2.09
NPAS3-201ENST00000346562 CRBNQ96SW2 442 aa28.09■■■□□ 2.09
NPAS3-201ENST00000346562 CYB5RLQ6IPT4 315 aa28.09■■■□□ 2.09
NPAS3-201ENST00000346562 WASHC2AQ641Q2 1341 aa28.09■■■□□ 2.09
NPAS3-201ENST00000346562 DZIP1LQ8IYY4 767 aaKnown RBP28.08■■■□□ 2.09
NPAS3-201ENST00000346562 SAFBQ15424 915 aaKnown RBP eCLIP28.08■■■□□ 2.09
NPAS3-201ENST00000346562 BICD2Q8TD16 824 aa28.07■■■□□ 2.08
NPAS3-201ENST00000346562 TSPYL4Q9UJ04 414 aa28.07■■■□□ 2.08
NPAS3-201ENST00000346562 MIA2Q96PC5 1412 aa28.06■■■□□ 2.08
NPAS3-201ENST00000346562 KLHL34Q8N239 644 aa28.06■■■□□ 2.08
NPAS3-201ENST00000346562 PLIN1O60240 522 aa28.06■■■□□ 2.08
NPAS3-201ENST00000346562 GNAI1P63096 354 aa28.06■■■□□ 2.08
NPAS3-201ENST00000346562 PDE4AP27815 886 aa28.05■■■□□ 2.08
NPAS3-201ENST00000346562 OSCARQ8IYS5 282 aa28.05■■■□□ 2.08
NPAS3-201ENST00000346562 APAF1O14727 1248 aa28.04■■■□□ 2.08
NPAS3-201ENST00000346562 INTS3Q68E01 1043 aaKnown RBP28.04■■■□□ 2.08
NPAS3-201ENST00000346562 RUNDC1Q96C34 613 aa28.03■■■□□ 2.08
NPAS3-201ENST00000346562 RIC3Q7Z5B4 369 aa28.03■■■□□ 2.08
NPAS3-201ENST00000346562 DHX57Q6P158 1386 aaKnown RBP28.03■■■□□ 2.08
NPAS3-201ENST00000346562 BRMS1Q9HCU9 246 aa28.02■■■□□ 2.08
NPAS3-201ENST00000346562 ZBED9Q6R2W3 1325 aa28.02■■■□□ 2.08
NPAS3-201ENST00000346562 EXOC6Q8TAG9 804 aa28.02■■■□□ 2.08
NPAS3-201ENST00000346562 RALYLQ86SE5 291 aaKnown RBP28■■■□□ 2.07
NPAS3-201ENST00000346562 SMC3Q9UQE7 1217 aa28■■■□□ 2.07
NPAS3-201ENST00000346562 ZNF592Q92610 1267 aa28■■■□□ 2.07
NPAS3-201ENST00000346562 PRKRIP1Q9H875 184 aaPredicted RBP27.99■■■□□ 2.07
NPAS3-201ENST00000346562 TSHZ2Q9NRE2 1034 aa27.98■■■□□ 2.07
NPAS3-201ENST00000346562 DCAF8L1A6NGE4 600 aa27.98■■■□□ 2.07
NPAS3-201ENST00000346562 CCDC27Q2M243 656 aa27.97■■■□□ 2.07
NPAS3-201ENST00000346562 R3HCC1Q9Y3T6 440 aaKnown RBP27.97■■■□□ 2.07
NPAS3-201ENST00000346562 CT47A1Q5JQC4 288 aaPredicted RBP27.97■■■□□ 2.07
NPAS3-201ENST00000346562 NINLQ9Y2I6 1382 aa27.97■■■□□ 2.07
NPAS3-201ENST00000346562 SASS6Q6UVJ0 657 aa27.97■■■□□ 2.07
NPAS3-201ENST00000346562 NEUROD6Q96NK8 337 aa27.96■■■□□ 2.07
NPAS3-201ENST00000346562 SAMD1Q6SPF0 538 aaPredicted RBP27.96■■■□□ 2.07
NPAS3-201ENST00000346562 WASHC4Q2M389 1173 aa27.96■■■□□ 2.07
NPAS3-201ENST00000346562 VPS37CA5D8V6 355 aaPredicted RBP27.96■■■□□ 2.07
NPAS3-201ENST00000346562 STAC3Q96MF2 364 aa27.96■■■□□ 2.07
NPAS3-201ENST00000346562 XBP1P17861 261 aa27.96■■■□□ 2.07
NPAS3-201ENST00000346562 CCDC73Q6ZRK6 1079 aa27.95■■■□□ 2.07
NPAS3-201ENST00000346562 HOMER1Q86YM7 354 aa27.95■■■□□ 2.07
NPAS3-201ENST00000346562 NLRP2Q9NX02 1062 aa27.95■■■□□ 2.07
NPAS3-201ENST00000346562 FANCD2Q9BXW9 1451 aa27.95■■■□□ 2.07
NPAS3-201ENST00000346562 ODF2Q5BJF6 829 aa27.94■■■□□ 2.06
NPAS3-201ENST00000346562 WIZO95785 1651 aa27.94■■■□□ 2.06
NPAS3-201ENST00000346562 FYB1O15117 783 aa27.93■■■□□ 2.06
NPAS3-201ENST00000346562 CDR1P51861 262 aa27.93■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms