RNA–Protein interactions for RNA: ENST00000343483.6

HOXA9-201, Transcript of homeobox A9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA9, Length 2,060 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-201ENST00000343483 ADAMTSL3P82987 1691 aa25.49■■□□□ 1.67
HOXA9-201ENST00000343483 ADGRF5Q8IZF2 1346 aa25.48■■□□□ 1.67
HOXA9-201ENST00000343483 REREQ9P2R6 1566 aa25.47■■□□□ 1.67
HOXA9-201ENST00000343483 TMF1P82094 1093 aa25.47■■□□□ 1.67
HOXA9-201ENST00000343483 PLPPR3Q6T4P5 718 aa25.47■■□□□ 1.67
HOXA9-201ENST00000343483 CFAP65Q6ZU64 1925 aaKnown RBP25.46■■□□□ 1.67
HOXA9-201ENST00000343483 SCAF11Q99590 1463 aaKnown RBP25.46■■□□□ 1.67
HOXA9-201ENST00000343483 AEBP2Q6ZN18 517 aaPredicted RBP25.45■■□□□ 1.66
HOXA9-201ENST00000343483 NOS1P29475 1434 aa25.45■■□□□ 1.66
HOXA9-201ENST00000343483 IQGAP1P46940 1657 aa25.45■■□□□ 1.66
HOXA9-201ENST00000343483 CFAP70Q5T0N1 1121 aa25.44■■□□□ 1.66
HOXA9-201ENST00000343483 ZC3H13Q5T200 1668 aaKnown RBP25.44■■□□□ 1.66
HOXA9-201ENST00000343483 HNRNPUQ00839 825 aaKnown RBP eCLIP25.44■■□□□ 1.66
HOXA9-201ENST00000343483 ARHGAP31Q2M1Z3 1444 aa25.43■■□□□ 1.66
HOXA9-201ENST00000343483 IFT172Q9UG01 1749 aa25.42■■□□□ 1.66
HOXA9-201ENST00000343483 FAM9BQ8IZU0 186 aa25.42■■□□□ 1.66
HOXA9-201ENST00000343483 AGLP35573 1532 aa25.42■■□□□ 1.66
HOXA9-201ENST00000343483 KIAA1210Q9ULL0 1709 aa25.42■■□□□ 1.66
HOXA9-201ENST00000343483 RIMS1Q86UR5 1692 aaKnown RBP25.41■■□□□ 1.66
HOXA9-201ENST00000343483 EIF3AQ14152 1382 aaKnown RBP25.4■■□□□ 1.66
HOXA9-201ENST00000343483 NRXN1Q9ULB1 1477 aa25.39■■□□□ 1.66
HOXA9-201ENST00000343483 SYNMO15061 1565 aa25.39■■□□□ 1.66
HOXA9-201ENST00000343483 FER1L4A9Z1Z3 1794 aa25.38■■□□□ 1.65
HOXA9-201ENST00000343483 CEBPAP49715 358 aaPredicted RBP25.36■■□□□ 1.65
HOXA9-201ENST00000343483 PTPRMP28827 1452 aa25.36■■□□□ 1.65
HOXA9-201ENST00000343483 PIK3C2BO00750 1634 aa25.35■■□□□ 1.65
HOXA9-201ENST00000343483 RPGRIP1LQ68CZ1 1315 aa25.35■■□□□ 1.65
HOXA9-201ENST00000343483 IDI1Q13907 227 aa25.33■■□□□ 1.65
HOXA9-201ENST00000343483 PPLO60437 1756 aa25.33■■□□□ 1.64
HOXA9-201ENST00000343483 PIK3C2GO75747 1445 aa25.32■■□□□ 1.64
HOXA9-201ENST00000343483 PANK3Q9H999 370 aa25.32■■□□□ 1.64
HOXA9-201ENST00000343483 KTN1Q86UP2 1357 aaKnown RBP25.31■■□□□ 1.64
HOXA9-201ENST00000343483 RALBP1Q15311 655 aa25.31■■□□□ 1.64
HOXA9-201ENST00000343483 SLC52A1Q9NWF4 448 aa25.31■■□□□ 1.64
HOXA9-201ENST00000343483 PER1O15534 1290 aaPredicted RBP25.3■■□□□ 1.64
HOXA9-201ENST00000343483 CDCA8Q53HL2 280 aa25.3■■□□□ 1.64
HOXA9-201ENST00000343483 FKBP8Q14318 412 aa25.3■■□□□ 1.64
HOXA9-201ENST00000343483 NUTM2DQ5VT03 806 aaPredicted RBP25.29■■□□□ 1.64
HOXA9-201ENST00000343483 MYBBP1AQ9BQG0 1328 aaKnown RBP25.28■■□□□ 1.64
HOXA9-201ENST00000343483 PREX1Q8TCU6 1659 aa25.28■■□□□ 1.64
HOXA9-201ENST00000343483 NEFLP07196 543 aa25.27■■□□□ 1.64
HOXA9-201ENST00000343483 FBXO31Q5XUX0 539 aaPredicted RBP25.27■■□□□ 1.64
HOXA9-201ENST00000343483 TMC1Q8TDI8 760 aa25.27■■□□□ 1.64
HOXA9-201ENST00000343483 C14orf93Q9H972 538 aaKnown RBP25.27■■□□□ 1.64
HOXA9-201ENST00000343483 CLTCQ00610 1675 aaKnown RBP25.26■■□□□ 1.63
HOXA9-201ENST00000343483 ESF1Q9H501 851 aaKnown RBP25.26■■□□□ 1.63
HOXA9-201ENST00000343483 VGFO15240 615 aaPredicted RBP25.25■■□□□ 1.63
HOXA9-201ENST00000343483 PPP6R1Q9UPN7 881 aa25.25■■□□□ 1.63
HOXA9-201ENST00000343483 SETBP1Q9Y6X0 1596 aa25.25■■□□□ 1.63
HOXA9-201ENST00000343483 NEXMIFQ5QGS0 1516 aa25.24■■□□□ 1.63
HOXA9-201ENST00000343483 PARD3Q8TEW0 1356 aa25.24■■□□□ 1.63
HOXA9-201ENST00000343483 ERVK-7P63135 1459 aa25.22■■□□□ 1.63
HOXA9-201ENST00000343483 CC2D1BQ5T0F9 858 aaKnown RBP25.22■■□□□ 1.63
HOXA9-201ENST00000343483 TMEM132EQ6IEE7 984 aa25.22■■□□□ 1.63
HOXA9-201ENST00000343483 TRAK1Q9UPV9 953 aa25.22■■□□□ 1.63
HOXA9-201ENST00000343483 BRD4O60885 1362 aaPredicted RBP25.21■■□□□ 1.63
HOXA9-201ENST00000343483 SLC24A1O60721 1099 aa25.21■■□□□ 1.63
HOXA9-201ENST00000343483 C3P01024 1663 aa25.21■■□□□ 1.63
HOXA9-201ENST00000343483 BCANQ96GW7 911 aa25.21■■□□□ 1.63
HOXA9-201ENST00000343483 ADGRB1O14514 1584 aa25.2■■□□□ 1.62
HOXA9-201ENST00000343483 ZMYM3Q14202 1370 aa25.2■■□□□ 1.62
HOXA9-201ENST00000343483 CENPJQ9HC77 1338 aaPredicted RBP25.19■■□□□ 1.62
HOXA9-201ENST00000343483 PNISRQ8TF01 805 aaKnown RBP25.19■■□□□ 1.62
HOXA9-201ENST00000343483 NLRP13Q86W25 1043 aa25.17■■□□□ 1.62
HOXA9-201ENST00000343483 TMEM131LA2VDJ0 1609 aa25.17■■□□□ 1.62
HOXA9-201ENST00000343483 ZBED9Q6R2W3 1325 aa25.17■■□□□ 1.62
HOXA9-201ENST00000343483 KNSTRNQ9Y448 316 aa25.16■■□□□ 1.62
HOXA9-201ENST00000343483 MYO3AQ8NEV4 1616 aa25.16■■□□□ 1.62
HOXA9-201ENST00000343483 KDM5AP29375 1690 aaKnown RBP25.16■■□□□ 1.62
HOXA9-201ENST00000343483 SENP3Q9H4L4 574 aaPredicted RBP25.15■■□□□ 1.62
HOXA9-201ENST00000343483 STAG3Q9UJ98 1225 aa25.15■■□□□ 1.62
HOXA9-201ENST00000343483 SBNO2Q9Y2G9 1366 aa25.15■■□□□ 1.62
HOXA9-201ENST00000343483 ZFYVE9O95405 1425 aa25.14■■□□□ 1.61
HOXA9-201ENST00000343483 MYO5BQ9ULV0 1848 aa25.12■■□□□ 1.61
HOXA9-201ENST00000343483 MYOM1P52179 1685 aa25.12■■□□□ 1.61
HOXA9-201ENST00000343483 SPATA31D1Q6ZQQ2 1576 aa25.09■■□□□ 1.61
HOXA9-201ENST00000343483 LRPPRCP42704 1394 aaKnown RBP25.08■■□□□ 1.6
HOXA9-201ENST00000343483 AMER1Q5JTC6 1135 aaPredicted RBP25.07■■□□□ 1.6
HOXA9-201ENST00000343483 QRICH2Q9H0J4 1663 aa25.07■■□□□ 1.6
HOXA9-201ENST00000343483 ASXL1Q8IXJ9 1541 aa25.04■■□□□ 1.6
HOXA9-201ENST00000343483 HSPA2P54652 639 aa25.04■■□□□ 1.6
HOXA9-201ENST00000343483 SENP3-EIF4A1A0A087X0R7 540 aa25.03■■□□□ 1.6
HOXA9-201ENST00000343483 STK26Q9P289 416 aa25.03■■□□□ 1.6
HOXA9-201ENST00000343483 A2ML1A8K2U0 1454 aa25.02■■□□□ 1.6
HOXA9-201ENST00000343483 LMTK3Q96Q04 1460 aa25.02■■□□□ 1.6
HOXA9-201ENST00000343483 SETD1BQ9UPS6 1966 aaKnown RBP25■■□□□ 1.59
HOXA9-201ENST00000343483 ARHGEF28Q8N1W1 1705 aaKnown RBP25■■□□□ 1.59
HOXA9-201ENST00000343483 SAFB2Q14151 953 aaKnown RBP eCLIP24.99■■□□□ 1.59
HOXA9-201ENST00000343483 CARD14Q9BXL6 1004 aa24.98■■□□□ 1.59
HOXA9-201ENST00000343483 NPC1L1Q9UHC9 1359 aa24.97■■□□□ 1.59
HOXA9-201ENST00000343483 PPP2R1AP30153 589 aa24.97■■□□□ 1.59
HOXA9-201ENST00000343483 EVC2Q86UK5 1308 aa24.97■■□□□ 1.59
HOXA9-201ENST00000343483 RIMS2Q9UQ26 1411 aa24.97■■□□□ 1.59
HOXA9-201ENST00000343483 TSHZ2Q9NRE2 1034 aa24.96■■□□□ 1.59
HOXA9-201ENST00000343483 ALKQ9UM73 1620 aa24.94■■□□□ 1.58
HOXA9-201ENST00000343483 YTHDC2Q9H6S0 1430 aaKnown RBP24.94■■□□□ 1.58
HOXA9-201ENST00000343483 SLC12A5Q9H2X9 1139 aa24.94■■□□□ 1.58
HOXA9-201ENST00000343483 TULP4Q9NRJ4 1543 aa24.93■■□□□ 1.58
HOXA9-201ENST00000343483 TNRQ92752 1358 aa24.92■■□□□ 1.58
HOXA9-201ENST00000343483 IRX6P78412 446 aaPredicted RBP24.91■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms