RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 TMEM131LA2VDJ0 1609 aa20.64■□□□□ 0.89
CBX3-201ENST00000337620 PPLO60437 1756 aa20.63■□□□□ 0.89
CBX3-201ENST00000337620 TNRQ92752 1358 aa20.63■□□□□ 0.89
CBX3-201ENST00000337620 MYO5BQ9ULV0 1848 aa20.62■□□□□ 0.89
CBX3-201ENST00000337620 GPRASP1Q5JY77 1395 aa20.62■□□□□ 0.89
CBX3-201ENST00000337620 VGFO15240 615 aaPredicted RBP20.61■□□□□ 0.89
CBX3-201ENST00000337620 CFAP70Q5T0N1 1121 aa20.6■□□□□ 0.89
CBX3-201ENST00000337620 DDX10Q13206 875 aaKnown RBP20.6■□□□□ 0.89
CBX3-201ENST00000337620 NEXMIFQ5QGS0 1516 aa20.6■□□□□ 0.89
CBX3-201ENST00000337620 NRXN1Q9ULB1 1477 aa20.59■□□□□ 0.89
CBX3-201ENST00000337620 C3P01024 1663 aa20.59■□□□□ 0.89
CBX3-201ENST00000337620 ST20-MTHFSA0A0A6YYL1 179 aa20.59■□□□□ 0.89
CBX3-201ENST00000337620 A2ML1A8K2U0 1454 aa20.56■□□□□ 0.88
CBX3-201ENST00000337620 LAMC1P11047 1609 aa20.56■□□□□ 0.88
CBX3-201ENST00000337620 C11orf95C9JLR9 678 aaPredicted RBP20.56■□□□□ 0.88
CBX3-201ENST00000337620 WASHC2AQ641Q2 1341 aa20.56■□□□□ 0.88
CBX3-201ENST00000337620 KIAA1210Q9ULL0 1709 aa20.55■□□□□ 0.88
CBX3-201ENST00000337620 PIK3C2GO75747 1445 aa20.55■□□□□ 0.88
CBX3-201ENST00000337620 SENP3Q9H4L4 574 aaPredicted RBP20.54■□□□□ 0.88
CBX3-201ENST00000337620 RIMS1Q86UR5 1692 aaKnown RBP20.53■□□□□ 0.88
CBX3-201ENST00000337620 C14orf93Q9H972 538 aaKnown RBP20.53■□□□□ 0.88
CBX3-201ENST00000337620 ZFYVE9O95405 1425 aa20.52■□□□□ 0.88
CBX3-201ENST00000337620 ADAMTSL3P82987 1691 aa20.51■□□□□ 0.87
CBX3-201ENST00000337620 CCDC7Q96M83 1385 aa20.5■□□□□ 0.87
CBX3-201ENST00000337620 RIMS2Q9UQ26 1411 aa20.5■□□□□ 0.87
CBX3-201ENST00000337620 SCAF11Q99590 1463 aaKnown RBP20.5■□□□□ 0.87
CBX3-201ENST00000337620 NLRP1Q9C000 1473 aa20.5■□□□□ 0.87
CBX3-201ENST00000337620 KIF7Q2M1P5 1343 aa20.5■□□□□ 0.87
CBX3-201ENST00000337620 POLR3GLQ9BT43 218 aa20.48■□□□□ 0.87
CBX3-201ENST00000337620 TMEM132EQ6IEE7 984 aa20.48■□□□□ 0.87
CBX3-201ENST00000337620 MIER1Q8N108 512 aa20.47■□□□□ 0.87
CBX3-201ENST00000337620 UBR1Q8IWV7 1749 aa20.47■□□□□ 0.87
CBX3-201ENST00000337620 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.47■□□□□ 0.87
CBX3-201ENST00000337620 IQGAP1P46940 1657 aa20.47■□□□□ 0.87
CBX3-201ENST00000337620 HDGFP51858 240 aaKnown RBP20.46■□□□□ 0.87
CBX3-201ENST00000337620 SETBP1Q9Y6X0 1596 aa20.45■□□□□ 0.86
CBX3-201ENST00000337620 KDM5AP29375 1690 aaKnown RBP20.45■□□□□ 0.86
CBX3-201ENST00000337620 EIF3AQ14152 1382 aaKnown RBP20.45■□□□□ 0.86
CBX3-201ENST00000337620 POLR1AO95602 1720 aaPredicted RBP20.44■□□□□ 0.86
CBX3-201ENST00000337620 TESK2Q96S53 571 aa20.44■□□□□ 0.86
CBX3-201ENST00000337620 TMEM2Q9UHN6 1383 aa20.44■□□□□ 0.86
CBX3-201ENST00000337620 TRAK1Q9UPV9 953 aa20.43■□□□□ 0.86
CBX3-201ENST00000337620 ADGRB1O14514 1584 aa20.42■□□□□ 0.86
CBX3-201ENST00000337620 MYO3AQ8NEV4 1616 aa20.4■□□□□ 0.86
CBX3-201ENST00000337620 TMF1P82094 1093 aa20.39■□□□□ 0.86
CBX3-201ENST00000337620 THEMISQ8N1K5 641 aaPredicted RBP20.39■□□□□ 0.86
CBX3-201ENST00000337620 BCANQ96GW7 911 aa20.39■□□□□ 0.86
CBX3-201ENST00000337620 ALKQ9UM73 1620 aa20.38■□□□□ 0.85
CBX3-201ENST00000337620 TXNDC2Q86VQ3 553 aa20.37■□□□□ 0.85
CBX3-201ENST00000337620 STK26Q9P289 416 aa20.37■□□□□ 0.85
CBX3-201ENST00000337620 EID1Q9Y6B2 187 aa20.37■□□□□ 0.85
CBX3-201ENST00000337620 DISP3Q9P2K9 1392 aa20.37■□□□□ 0.85
CBX3-201ENST00000337620 LTKP29376 864 aa20.36■□□□□ 0.85
CBX3-201ENST00000337620 PTPRMP28827 1452 aa20.36■□□□□ 0.85
CBX3-201ENST00000337620 CENPJQ9HC77 1338 aaPredicted RBP20.35■□□□□ 0.85
CBX3-201ENST00000337620 ASXL1Q8IXJ9 1541 aa20.34■□□□□ 0.85
CBX3-201ENST00000337620 CEP170BQ9Y4F5 1589 aaPredicted RBP20.34■□□□□ 0.85
CBX3-201ENST00000337620 ANP32CO43423 234 aa20.32■□□□□ 0.84
CBX3-201ENST00000337620 SLIT1O75093 1534 aa20.32■□□□□ 0.84
CBX3-201ENST00000337620 SETD1BQ9UPS6 1966 aaKnown RBP20.32■□□□□ 0.84
CBX3-201ENST00000337620 SLC24A1O60721 1099 aa20.32■□□□□ 0.84
CBX3-201ENST00000337620 YTHDC2Q9H6S0 1430 aaKnown RBP20.31■□□□□ 0.84
CBX3-201ENST00000337620 ARHGAP23Q9P227 1491 aa20.31■□□□□ 0.84
CBX3-201ENST00000337620 NRXN3Q9Y4C0 1643 aa20.3■□□□□ 0.84
CBX3-201ENST00000337620 CDCA8Q53HL2 280 aa20.3■□□□□ 0.84
CBX3-201ENST00000337620 PLEKHG1Q9ULL1 1385 aa20.3■□□□□ 0.84
CBX3-201ENST00000337620 ARHGEF28Q8N1W1 1705 aaKnown RBP20.28■□□□□ 0.84
CBX3-201ENST00000337620 SAFB2Q14151 953 aaKnown RBP eCLIP20.28■□□□□ 0.84
CBX3-201ENST00000337620 SETD1AO15047 1707 aaKnown RBP20.28■□□□□ 0.84
CBX3-201ENST00000337620 METP08581 1390 aa20.27■□□□□ 0.84
CBX3-201ENST00000337620 QRICH2Q9H0J4 1663 aa20.26■□□□□ 0.83
CBX3-201ENST00000337620 SBNO2Q9Y2G9 1366 aa20.26■□□□□ 0.83
CBX3-201ENST00000337620 POGKQ9P215 609 aa20.26■□□□□ 0.83
CBX3-201ENST00000337620 PRAM1Q96QH2 718 aa20.26■□□□□ 0.83
CBX3-201ENST00000337620 SLC26A8Q96RN1 970 aa20.26■□□□□ 0.83
CBX3-201ENST00000337620 ZNF142P52746 1687 aaPredicted RBP20.26■□□□□ 0.83
CBX3-201ENST00000337620 LRPPRCP42704 1394 aaKnown RBP20.25■□□□□ 0.83
CBX3-201ENST00000337620 ADAMTS13Q76LX8 1427 aa20.24■□□□□ 0.83
CBX3-201ENST00000337620 ANKLE2Q86XL3 938 aa20.23■□□□□ 0.83
CBX3-201ENST00000337620 ABCC11Q96J66 1382 aa20.22■□□□□ 0.83
CBX3-201ENST00000337620 KDM4FA0A1W2PPD8 638 aa20.21■□□□□ 0.83
CBX3-201ENST00000337620 CNGB1Q14028 1251 aaPredicted RBP20.2■□□□□ 0.82
CBX3-201ENST00000337620 WAPLQ7Z5K2 1190 aa20.2■□□□□ 0.82
CBX3-201ENST00000337620 PANK3Q9H999 370 aa20.2■□□□□ 0.82
CBX3-201ENST00000337620 EVC2Q86UK5 1308 aa20.19■□□□□ 0.82
CBX3-201ENST00000337620 MINK1Q8N4C8 1332 aaPredicted RBP20.19■□□□□ 0.82
CBX3-201ENST00000337620 TBX22Q9Y458 520 aa20.19■□□□□ 0.82
CBX3-201ENST00000337620 MED14O60244 1454 aa20.19■□□□□ 0.82
CBX3-201ENST00000337620 DLC1Q96QB1 1528 aa20.18■□□□□ 0.82
CBX3-201ENST00000337620 PRKRIP1Q9H875 184 aaPredicted RBP20.16■□□□□ 0.82
CBX3-201ENST00000337620 PLEKHH1Q9ULM0 1364 aa20.16■□□□□ 0.82
CBX3-201ENST00000337620 TULP4Q9NRJ4 1543 aa20.14■□□□□ 0.81
CBX3-201ENST00000337620 CABP2Q9NPB3 220 aa20.14■□□□□ 0.81
CBX3-201ENST00000337620 TECPR2O15040 1411 aa20.13■□□□□ 0.81
CBX3-201ENST00000337620 PER1O15534 1290 aaPredicted RBP20.13■□□□□ 0.81
CBX3-201ENST00000337620 SRPK2P78362 688 aaKnown RBP20.13■□□□□ 0.81
CBX3-201ENST00000337620 TMC1Q8TDI8 760 aa20.13■□□□□ 0.81
CBX3-201ENST00000337620 SIRT1Q96EB6 747 aa20.13■□□□□ 0.81
CBX3-201ENST00000337620 AMOTL2Q9Y2J4 779 aa20.13■□□□□ 0.81
CBX3-201ENST00000337620 DIP2AQ14689 1571 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms