RNA–Protein interactions for RNA: ENST00000330949.2

SOX1-201, Transcript of SRY-box 1, humanhuman

APPRIS P1 BASIC

Gene SOX1, Length 2,842 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1-201ENST00000330949 SEC24BO95487 1268 aa31.12■■■□□ 2.57
SOX1-201ENST00000330949 UPF2Q9HAU5 1272 aaKnown RBP31.12■■■□□ 2.57
SOX1-201ENST00000330949 COL17A1Q9UMD9 1497 aaPredicted RBP31.1■■■□□ 2.57
SOX1-201ENST00000330949 MCM4P33991 863 aa31.1■■■□□ 2.57
SOX1-201ENST00000330949 WDR43Q15061 677 aaKnown RBP eCLIP31.06■■■□□ 2.56
SOX1-201ENST00000330949 CLASP1Q7Z460 1538 aa31.06■■■□□ 2.56
SOX1-201ENST00000330949 SLFN5Q08AF3 891 aa31.06■■■□□ 2.56
SOX1-201ENST00000330949 ESPNB1AK53 854 aa31.05■■■□□ 2.56
SOX1-201ENST00000330949 IGHDP01880 384 aa31.05■■■□□ 2.56
SOX1-201ENST00000330949 TRPM1Q7Z4N2 1603 aa31.05■■■□□ 2.56
SOX1-201ENST00000330949 MYH16Q9H6N6 1097 aa31.05■■■□□ 2.56
SOX1-201ENST00000330949 PANK3Q9H999 370 aa31.05■■■□□ 2.56
SOX1-201ENST00000330949 ISY1Q9ULR0 285 aaKnown RBP31.05■■■□□ 2.56
SOX1-201ENST00000330949 TBC1D2Q9BYX2 928 aa31.04■■■□□ 2.56
SOX1-201ENST00000330949 GZF1Q9H116 711 aaPredicted RBP31.04■■■□□ 2.56
SOX1-201ENST00000330949 SHANK2Q9UPX8 1470 aa31.03■■■□□ 2.56
SOX1-201ENST00000330949 CGNL1Q0VF96 1302 aa31.03■■■□□ 2.56
SOX1-201ENST00000330949 TBC1D32Q96NH3 1257 aa31.03■■■□□ 2.56
SOX1-201ENST00000330949 TPM2P07951 284 aa31.02■■■□□ 2.56
SOX1-201ENST00000330949 SAMD9LQ8IVG5 1584 aa31.01■■■□□ 2.56
SOX1-201ENST00000330949 NKTRP30414 1462 aaKnown RBP31■■■□□ 2.55
SOX1-201ENST00000330949 TRAK2O60296 914 aa31■■■□□ 2.55
SOX1-201ENST00000330949 ZMYM3Q14202 1370 aa30.99■■■□□ 2.55
SOX1-201ENST00000330949 TRMT2AQ8IZ69 625 aaKnown RBP30.99■■■□□ 2.55
SOX1-201ENST00000330949 KDM5DQ9BY66 1539 aa30.99■■■□□ 2.55
SOX1-201ENST00000330949 PRAG1Q86YV5 1406 aa30.99■■■□□ 2.55
SOX1-201ENST00000330949 CDC42BPBQ9Y5S2 1711 aa30.98■■■□□ 2.55
SOX1-201ENST00000330949 CCDC144AA2RUR9 1427 aa30.98■■■□□ 2.55
SOX1-201ENST00000330949 GRPEL1Q9HAV7 217 aa30.97■■■□□ 2.55
SOX1-201ENST00000330949 CENPJQ9HC77 1338 aaPredicted RBP30.97■■■□□ 2.55
SOX1-201ENST00000330949 PDCL3Q9H2J4 239 aa30.97■■■□□ 2.55
SOX1-201ENST00000330949 DISP3Q9P2K9 1392 aa30.97■■■□□ 2.55
SOX1-201ENST00000330949 GPRASP1Q5JY77 1395 aa30.96■■■□□ 2.55
SOX1-201ENST00000330949 CCDC141Q6ZP82 1450 aa30.95■■■□□ 2.55
SOX1-201ENST00000330949 NINLQ9Y2I6 1382 aa30.95■■■□□ 2.55
SOX1-201ENST00000330949 PDE3AQ14432 1141 aa30.95■■■□□ 2.55
SOX1-201ENST00000330949 CLUAP1Q96AJ1 413 aa30.95■■■□□ 2.54
SOX1-201ENST00000330949 CHMP5Q9NZZ3 219 aa30.95■■■□□ 2.54
SOX1-201ENST00000330949 FAM135AQ9P2D6 1515 aa30.94■■■□□ 2.54
SOX1-201ENST00000330949 LAMC1P11047 1609 aa30.94■■■□□ 2.54
SOX1-201ENST00000330949 SYCP2Q9BX26 1530 aa30.93■■■□□ 2.54
SOX1-201ENST00000330949 TRIM44Q96DX7 344 aaPredicted RBP30.93■■■□□ 2.54
SOX1-201ENST00000330949 ERCC6L2Q5T890 1561 aa30.93■■■□□ 2.54
SOX1-201ENST00000330949 TESK2Q96S53 571 aa30.93■■■□□ 2.54
SOX1-201ENST00000330949 BCAR3O75815 825 aa30.92■■■□□ 2.54
SOX1-201ENST00000330949 ERBINQ96RT1 1412 aa30.91■■■□□ 2.54
SOX1-201ENST00000330949 DDX11L8A8MPP1 907 aa30.9■■■□□ 2.54
SOX1-201ENST00000330949 PPP2R1AP30153 589 aa30.9■■■□□ 2.54
SOX1-201ENST00000330949 TMF1P82094 1093 aa30.9■■■□□ 2.54
SOX1-201ENST00000330949 ERBB4Q15303 1308 aa30.9■■■□□ 2.54
SOX1-201ENST00000330949 PRDM15P57071 1507 aaPredicted RBP30.89■■■□□ 2.54
SOX1-201ENST00000330949 PLA2R1Q13018 1463 aa30.89■■■□□ 2.54
SOX1-201ENST00000330949 ARHGAP5Q13017 1502 aa30.89■■■□□ 2.53
SOX1-201ENST00000330949 ARHGEF5Q12774 1597 aa30.88■■■□□ 2.53
SOX1-201ENST00000330949 TTC37Q6PGP7 1564 aa30.88■■■□□ 2.53
SOX1-201ENST00000330949 E9PSI1 815 aa30.86■■■□□ 2.53
SOX1-201ENST00000330949 PMFBP1Q8TBY8 1022 aa30.84■■■□□ 2.53
SOX1-201ENST00000330949 AAMPQ13685 434 aa30.83■■■□□ 2.53
SOX1-201ENST00000330949 SPRYD3Q8NCJ5 442 aa30.83■■■□□ 2.53
SOX1-201ENST00000330949 PREX2Q70Z35 1606 aa30.83■■■□□ 2.53
SOX1-201ENST00000330949 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.83■■■□□ 2.53
SOX1-201ENST00000330949 PLEKHG5O94827 1062 aa30.82■■■□□ 2.52
SOX1-201ENST00000330949 KNSTRNQ9Y448 316 aa30.82■■■□□ 2.52
SOX1-201ENST00000330949 CHD1O14646 1710 aa30.81■■■□□ 2.52
SOX1-201ENST00000330949 CANXP27824 592 aaKnown RBP30.8■■■□□ 2.52
SOX1-201ENST00000330949 RSPH4AQ5TD94 716 aa30.8■■■□□ 2.52
SOX1-201ENST00000330949 CALD1Q05682 793 aaKnown RBP30.8■■■□□ 2.52
SOX1-201ENST00000330949 SPINK5Q9NQ38 1064 aaPredicted RBP30.8■■■□□ 2.52
SOX1-201ENST00000330949 PODXL2Q9NZ53 605 aa30.79■■■□□ 2.52
SOX1-201ENST00000330949 COG6Q9Y2V7 657 aa30.79■■■□□ 2.52
SOX1-201ENST00000330949 ABCC2Q92887 1545 aa30.78■■■□□ 2.52
SOX1-201ENST00000330949 PIK3C2GO75747 1445 aa30.78■■■□□ 2.52
SOX1-201ENST00000330949 PLXNC1O60486 1568 aa30.76■■■□□ 2.52
SOX1-201ENST00000330949 NGEFQ8N5V2 710 aa30.76■■■□□ 2.52
SOX1-201ENST00000330949 A2MP01023 1474 aa30.76■■■□□ 2.52
SOX1-201ENST00000330949 EIF2AK4Q9P2K8 1649 aaKnown RBP30.74■■■□□ 2.51
SOX1-201ENST00000330949 PANK1Q8TE04 598 aa30.74■■■□□ 2.51
SOX1-201ENST00000330949 KIAA1211Q6ZU35 1233 aa30.74■■■□□ 2.51
SOX1-201ENST00000330949 APAF1O14727 1248 aa30.73■■■□□ 2.51
SOX1-201ENST00000330949 MAGI2Q86UL8 1455 aa30.72■■■□□ 2.51
SOX1-201ENST00000330949 CCDC146Q8IYE0 955 aa30.72■■■□□ 2.51
SOX1-201ENST00000330949 AMER1Q5JTC6 1135 aaPredicted RBP30.71■■■□□ 2.51
SOX1-201ENST00000330949 C22orf23Q9BZE7 217 aa30.71■■■□□ 2.51
SOX1-201ENST00000330949 PDZRN3Q9UPQ7 1066 aa30.71■■■□□ 2.51
SOX1-201ENST00000330949 WDR7Q9Y4E6 1490 aa30.71■■■□□ 2.51
SOX1-201ENST00000330949 AFAP1Q8N556 730 aa30.7■■■□□ 2.51
SOX1-201ENST00000330949 HSCBQ8IWL3 235 aa30.69■■■□□ 2.5
SOX1-201ENST00000330949 TERF1P54274 439 aa30.67■■■□□ 2.5
SOX1-201ENST00000330949 SKOR2Q2VWA4 1001 aaPredicted RBP30.67■■■□□ 2.5
SOX1-201ENST00000330949 RTEL1-TNFRSF6BF6WH68 1400 aa30.67■■■□□ 2.5
SOX1-201ENST00000330949 PTMSP20962 102 aa30.66■■■□□ 2.5
SOX1-201ENST00000330949 ZNF692Q9BU19 519 aaPredicted RBP30.65■■■□□ 2.5
SOX1-201ENST00000330949 CCDC173Q0VFZ6 552 aa30.65■■■□□ 2.5
SOX1-201ENST00000330949 MAP7D2Q96T17 732 aa30.65■■■□□ 2.5
SOX1-201ENST00000330949 RWDD1Q9H446 243 aaPredicted RBP30.65■■■□□ 2.5
SOX1-201ENST00000330949 TRAPPC8Q9Y2L5 1435 aa30.64■■■□□ 2.5
SOX1-201ENST00000330949 ASXL1Q8IXJ9 1541 aa30.64■■■□□ 2.5
SOX1-201ENST00000330949 PCDHB15Q9Y5E8 787 aa30.63■■■□□ 2.49
SOX1-201ENST00000330949 OFD1O75665 1012 aa30.63■■■□□ 2.49
SOX1-201ENST00000330949 ZSCAN30Q86W11 494 aa30.63■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms