RNA–Protein interactions for RNA: ENST00000328159.8

TPM3-205, Transcript of tropomyosin 3, humanhuman

TSL 2 BASIC

Gene TPM3, Length 1,771 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-205ENST00000328159 NRXN1Q9ULB1 1477 aa20.62■□□□□ 0.89
TPM3-205ENST00000328159 ADGRF5Q8IZF2 1346 aa20.61■□□□□ 0.89
TPM3-205ENST00000328159 TESK2Q96S53 571 aa20.61■□□□□ 0.89
TPM3-205ENST00000328159 PREX1Q8TCU6 1659 aa20.6■□□□□ 0.89
TPM3-205ENST00000328159 SCAF11Q99590 1463 aaKnown RBP20.6■□□□□ 0.89
TPM3-205ENST00000328159 PPP6R1Q9UPN7 881 aa20.58■□□□□ 0.89
TPM3-205ENST00000328159 RPGRIP1LQ68CZ1 1315 aa20.58■□□□□ 0.88
TPM3-205ENST00000328159 DISP3Q9P2K9 1392 aa20.57■□□□□ 0.88
TPM3-205ENST00000328159 GTF3C3Q9Y5Q9 886 aa20.56■□□□□ 0.88
TPM3-205ENST00000328159 CFAP70Q5T0N1 1121 aa20.55■□□□□ 0.88
TPM3-205ENST00000328159 TMF1P82094 1093 aa20.54■□□□□ 0.88
TPM3-205ENST00000328159 CLTCQ00610 1675 aaKnown RBP20.54■□□□□ 0.88
TPM3-205ENST00000328159 SLC52A1Q9NWF4 448 aa20.54■□□□□ 0.88
TPM3-205ENST00000328159 EIF3AQ14152 1382 aaKnown RBP20.53■□□□□ 0.88
TPM3-205ENST00000328159 PIK3C2GO75747 1445 aa20.52■□□□□ 0.88
TPM3-205ENST00000328159 SETBP1Q9Y6X0 1596 aa20.52■□□□□ 0.88
TPM3-205ENST00000328159 IDI1Q13907 227 aa20.51■□□□□ 0.87
TPM3-205ENST00000328159 NEXMIFQ5QGS0 1516 aa20.51■□□□□ 0.87
TPM3-205ENST00000328159 ERVK-7P63135 1459 aa20.51■□□□□ 0.87
TPM3-205ENST00000328159 MYO5BQ9ULV0 1848 aa20.49■□□□□ 0.87
TPM3-205ENST00000328159 CCDC184Q52MB2 194 aa20.49■□□□□ 0.87
TPM3-205ENST00000328159 TMEM131LA2VDJ0 1609 aa20.49■□□□□ 0.87
TPM3-205ENST00000328159 FBXO31Q5XUX0 539 aaPredicted RBP20.48■□□□□ 0.87
TPM3-205ENST00000328159 C14orf93Q9H972 538 aaKnown RBP20.48■□□□□ 0.87
TPM3-205ENST00000328159 MLECQ14165 292 aa20.46■□□□□ 0.87
TPM3-205ENST00000328159 MRS2Q9HD23 443 aa20.46■□□□□ 0.87
TPM3-205ENST00000328159 MYO3AQ8NEV4 1616 aa20.45■□□□□ 0.86
TPM3-205ENST00000328159 VGFO15240 615 aaPredicted RBP20.45■□□□□ 0.86
TPM3-205ENST00000328159 SPATA31D1Q6ZQQ2 1576 aa20.45■□□□□ 0.86
TPM3-205ENST00000328159 ADGRB1O14514 1584 aa20.44■□□□□ 0.86
TPM3-205ENST00000328159 ZFYVE9O95405 1425 aa20.44■□□□□ 0.86
TPM3-205ENST00000328159 CDCA8Q53HL2 280 aa20.44■□□□□ 0.86
TPM3-205ENST00000328159 KTN1Q86UP2 1357 aaKnown RBP20.44■□□□□ 0.86
TPM3-205ENST00000328159 CNGB1Q14028 1251 aaPredicted RBP20.43■□□□□ 0.86
TPM3-205ENST00000328159 SLC24A1O60721 1099 aa20.41■□□□□ 0.86
TPM3-205ENST00000328159 NUTM2DQ5VT03 806 aaPredicted RBP20.41■□□□□ 0.86
TPM3-205ENST00000328159 KDM5AP29375 1690 aaKnown RBP20.4■□□□□ 0.86
TPM3-205ENST00000328159 PER1O15534 1290 aaPredicted RBP20.4■□□□□ 0.86
TPM3-205ENST00000328159 RALBP1Q15311 655 aa20.4■□□□□ 0.86
TPM3-205ENST00000328159 PANK3Q9H999 370 aa20.39■□□□□ 0.86
TPM3-205ENST00000328159 ESF1Q9H501 851 aaKnown RBP20.38■□□□□ 0.85
TPM3-205ENST00000328159 SBNO2Q9Y2G9 1366 aa20.38■□□□□ 0.85
TPM3-205ENST00000328159 MYOM1P52179 1685 aa20.37■□□□□ 0.85
TPM3-205ENST00000328159 HNRNPUQ00839 825 aaKnown RBP eCLIP20.37■□□□□ 0.85
TPM3-205ENST00000328159 TMEM132EQ6IEE7 984 aa20.36■□□□□ 0.85
TPM3-205ENST00000328159 FAM9BQ8IZU0 186 aa20.36■□□□□ 0.85
TPM3-205ENST00000328159 CENPJQ9HC77 1338 aaPredicted RBP20.36■□□□□ 0.85
TPM3-205ENST00000328159 QRICH2Q9H0J4 1663 aa20.36■□□□□ 0.85
TPM3-205ENST00000328159 MYBBP1AQ9BQG0 1328 aaKnown RBP20.36■□□□□ 0.85
TPM3-205ENST00000328159 ZMYM3Q14202 1370 aa20.36■□□□□ 0.85
TPM3-205ENST00000328159 PARD3Q8TEW0 1356 aa20.35■□□□□ 0.85
TPM3-205ENST00000328159 STAG3Q9UJ98 1225 aa20.34■□□□□ 0.85
TPM3-205ENST00000328159 TRAK1Q9UPV9 953 aa20.34■□□□□ 0.85
TPM3-205ENST00000328159 A2ML1A8K2U0 1454 aa20.33■□□□□ 0.84
TPM3-205ENST00000328159 ARHGEF28Q8N1W1 1705 aaKnown RBP20.32■□□□□ 0.84
TPM3-205ENST00000328159 TRHP20396 242 aaPredicted RBP20.32■□□□□ 0.84
TPM3-205ENST00000328159 BRD4O60885 1362 aaPredicted RBP20.32■□□□□ 0.84
TPM3-205ENST00000328159 ASXL1Q8IXJ9 1541 aa20.3■□□□□ 0.84
TPM3-205ENST00000328159 TMC1Q8TDI8 760 aa20.3■□□□□ 0.84
TPM3-205ENST00000328159 CC2D1BQ5T0F9 858 aaKnown RBP20.28■□□□□ 0.84
TPM3-205ENST00000328159 RIMS2Q9UQ26 1411 aa20.27■□□□□ 0.84
TPM3-205ENST00000328159 KNSTRNQ9Y448 316 aa20.27■□□□□ 0.84
TPM3-205ENST00000328159 NLRP13Q86W25 1043 aa20.26■□□□□ 0.83
TPM3-205ENST00000328159 PNISRQ8TF01 805 aaKnown RBP20.26■□□□□ 0.83
TPM3-205ENST00000328159 TNRQ92752 1358 aa20.26■□□□□ 0.83
TPM3-205ENST00000328159 ALKQ9UM73 1620 aa20.26■□□□□ 0.83
TPM3-205ENST00000328159 SENP3Q9H4L4 574 aaPredicted RBP20.23■□□□□ 0.83
TPM3-205ENST00000328159 YTHDC2Q9H6S0 1430 aaKnown RBP20.22■□□□□ 0.83
TPM3-205ENST00000328159 ZBED9Q6R2W3 1325 aa20.22■□□□□ 0.83
TPM3-205ENST00000328159 AMER1Q5JTC6 1135 aaPredicted RBP20.21■□□□□ 0.83
TPM3-205ENST00000328159 LRPPRCP42704 1394 aaKnown RBP20.21■□□□□ 0.83
TPM3-205ENST00000328159 NPC1L1Q9UHC9 1359 aa20.21■□□□□ 0.83
TPM3-205ENST00000328159 STK26Q9P289 416 aa20.21■□□□□ 0.83
TPM3-205ENST00000328159 TULP4Q9NRJ4 1543 aa20.2■□□□□ 0.82
TPM3-205ENST00000328159 SETD1AO15047 1707 aaKnown RBP20.2■□□□□ 0.82
TPM3-205ENST00000328159 PTPRMP28827 1452 aa20.19■□□□□ 0.82
TPM3-205ENST00000328159 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.19■□□□□ 0.82
TPM3-205ENST00000328159 UBR1Q8IWV7 1749 aa20.19■□□□□ 0.82
TPM3-205ENST00000328159 FER1L4A9Z1Z3 1794 aa20.18■□□□□ 0.82
TPM3-205ENST00000328159 PUS7Q96PZ0 661 aaKnown RBP20.18■□□□□ 0.82
TPM3-205ENST00000328159 EVC2Q86UK5 1308 aa20.18■□□□□ 0.82
TPM3-205ENST00000328159 NRXN3Q9Y4C0 1643 aa20.17■□□□□ 0.82
TPM3-205ENST00000328159 C3P01024 1663 aa20.17■□□□□ 0.82
TPM3-205ENST00000328159 CARD14Q9BXL6 1004 aa20.15■□□□□ 0.82
TPM3-205ENST00000328159 NLRP1Q9C000 1473 aa20.14■□□□□ 0.82
TPM3-205ENST00000328159 HDGFP51858 240 aaKnown RBP20.14■□□□□ 0.81
TPM3-205ENST00000328159 SAFB2Q14151 953 aaKnown RBP eCLIP20.13■□□□□ 0.81
TPM3-205ENST00000328159 DLC1Q96QB1 1528 aa20.13■□□□□ 0.81
TPM3-205ENST00000328159 PPP2R1AP30153 589 aa20.13■□□□□ 0.81
TPM3-205ENST00000328159 PRAM1Q96QH2 718 aa20.13■□□□□ 0.81
TPM3-205ENST00000328159 TMEM2Q9UHN6 1383 aa20.12■□□□□ 0.81
TPM3-205ENST00000328159 CEBPAP49715 358 aaPredicted RBP20.12■□□□□ 0.81
TPM3-205ENST00000328159 POGKQ9P215 609 aa20.12■□□□□ 0.81
TPM3-205ENST00000328159 SLC12A5Q9H2X9 1139 aa20.11■□□□□ 0.81
TPM3-205ENST00000328159 DNAJC5Q9H3Z4 198 aa20.11■□□□□ 0.81
TPM3-205ENST00000328159 SUPT16HQ9Y5B9 1047 aaKnown RBP20.11■□□□□ 0.81
TPM3-205ENST00000328159 USP32Q8NFA0 1604 aa20.09■□□□□ 0.81
TPM3-205ENST00000328159 CABP2Q9NPB3 220 aa20.09■□□□□ 0.81
TPM3-205ENST00000328159 NSD3Q9BZ95 1437 aa20.09■□□□□ 0.81
TPM3-205ENST00000328159 MINK1Q8N4C8 1332 aaPredicted RBP20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms